BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G26300.1 Length=1082 Score E Sequences producing significant alignments: (Bits) Value Ahg472789 jgi|Araly1|472789|fgenesh2_kg.1__2743__AT1G26300.1 1580 0.0 > Ahg472789 jgi|Araly1|472789|fgenesh2_kg.1__2743__AT1G26300.1 Length=1049 Score = 1580 bits (855), Expect = 0.0 Identities = 985/1049 (94%), Gaps = 3/1049 (0%) Strand=Plus/Plus Query 6 GCAATGGAGGATCTATGGAAGAGGGCAAAATCGTTCGCAGAAGAAGCGGGTAAGAAGTCT 65 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| Sbjct 3 GCAATGGAGGATCTATGGAAGAGAGCCAAATCGTTCGCAGAAGAAGCGGGTAAGAAATCT 62 Query 66 CAGACGATAACACAATCATCCTCCGCGACCTTCGTCAATCTCGTCACCGAGACTGCTAAG 125 ||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 63 CAGACCATCACCCAATCATCCTCCGCGACGTTCGTCAATCTCGTCACCGAGACTGCTAAG 122 Query 126 AAATCCAAGGAACTCGCTCTCGAAGCTTCGAAGAAAGCTGATCAATTCAATGCCGCCGAT 185 ||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| Sbjct 123 AAATCCAAGGAACTCGCTCTCGAAGCTTCTAAGAAAGCCGATCAATTCAATGTTTCCGAT 182 Query 186 TTCGTTGCTGAAACGGCTAAGAAATCCAAAGAATTCGCTGCTGAAGCTTCAAAGAAGGCG 245 |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||||| Sbjct 183 TTCGTTGCCGAAACGGCTAAAAAATCTAAAGAATTCGCTGCCGAAGCTTCAAAGAAGGCG 242 Query 246 GATCAGTTCAAAGTCGCCGCGCTGAAACAAGCTGATCAGATCCAGAACATCAAATCGATC 305 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 243 GATCAGTTCAAAGTCGCCGCGCTGAAGCAAGCTGATCAGATCCAGAACATCAAATCGATC 302 Query 306 GCTGATATAATCGGGACCGGGACCGGGTCAGGATCCGGTTCAGAAGCGGAGCTTCTCGAA 365 |||||||| |||||| ||||| | || |||||||||||||| ||||| |||||||||||| Sbjct 303 GCTGATATTATCGGGTCCGGGTCAGGATCAGGATCCGGTTCCGAAGCAGAGCTTCTCGAA 362 Query 366 TTCGGTGTAACGGATGATTTGAGAGAGTTCGCTGAAGGCTTGACCTCTGCTACATTCCAA 425 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 363 TTCGGTGTAACGGATGATTTGAGAGAGTTCGTTGAAGGCTTGACCTCTGCTACATTCCAA 422 Query 426 GCTTTTCCTGATCAAGATCAAGGGGATGAAGTTTCCGATGTGATAACAAATGCTTCGAAT 485 ||||||||||| ||||||||| |||||||||| | ||||||| ||| ||| |||||||| Sbjct 423 GCTTTTCCTGAACAAGATCAACCGGATGAAGTTGCTGATGTGACAACGAATTCTTCGAAT 482 Query 486 GTTCGAAAGGATCTCTCGGATTGGCAAGAGAGACATGCCACTCTGGTTCTAACCTCTGTC 545 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 GTTCGAAAGGATCTATCGGATTGGCAAGAGAGACATGCCACTCTGGTTCTAACCTCTGTC 542 Query 546 AAGCAAATCTCCAAGTTAAGATACGAACTTTGCCCTCGTTTCATGAAAGAAAGGAGGTTC 605 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 543 AAGCAAATCTCCAAGTTAAGATACGAACTTTGCCCGCGATTCATGAAAGAAAGGAGGTTC 602 Query 606 TGGAGGATTTATTTCACACTAGTGAGCACTCATGTTTCTCCATATGAGAGGAAGTACATG 665 |||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 603 TGGAGGATATATTTCACACTAGTGAGCACTCATGTTTCACCATATGAGAGGAGGTACATG 662 Query 666 GAGGAACTTAAGACCAAAGGAGAGCATGGAAATGAAGAAGCTAAGAAGGCTCCAGCGACT 725 |||| |||||||||||||| ||| |||| ||||||||||||||||||||| ||||||||| Sbjct 663 GAGGCACTTAAGACCAAAGCAGAACATGAAAATGAAGAAGCTAAGAAGGCCCCAGCGACT 722 Query 726 GGAGAGACAGAAACAGTAGAAAAGAATGTTGCAATCCGTAGAACATCTACTGCGTCTTCT 785 ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| Sbjct 723 GGAGAGACAGAAACAGTGGAAAAGAATGTTGCAATCAGTAGAACATCTACTGCGACTTCT 782 Query 786 GAGCAGGATCTGGATACATTCCTGTTGGGTGATCTAGAAGACAGTGATG-AAGCTCCAGA 844 ||||||||||||||||||||||| ||||| ||||| ||||||||||||| || ||||||| Sbjct 783 GAGCAGGATCTGGATACATTCCTTTTGGGAGATCTCGAAGACAGTGATGGAA-CTCCAGA 841 Query 845 TGATGGTGATGGAAGCCTTGAGGATGACTTTGACAAGATTGGAAACTCAGATGTTGAAGA 904 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 842 TGATGGTGATGGAAGCCTTGAGGATGACTTTGACAAGATTGGAAACTCAGATGTTGAAGA 901 Query 905 CGAGAAGCAATCATCTAAAGCTACAACAAATGCAGGAAACGAAGTGTCTTGTTAGTTTTA 964 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 902 CGAGAAGCAATCAACTAAAGCTACAACAAATGCAGGAAACTAAGTGTCTTGTTAGTTT-A 960 Query 965 AGTTCCAATTAGAAAAGGGTAAATGAAGAAGATGCTTGAAATGTATAGTTTTGATTTAGT 1024 | ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 961 ACATCCAATTAGAAAAAGGTAAATGAAGACGATGCTTGAAATGTATAGTTTTGATTTAGT 1020 Query 1025 AAGTGATGCATACGAAGACCTTGATTTCG 1053 ||| || ||||| ||||||| ||||||| Sbjct 1021 AAGGGACGCATAAGAAGACCGCGATTTCG 1049 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40295923269 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5