BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26300.1
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472789 jgi|Araly1|472789|fgenesh2_kg.1__2743__AT1G26300.1 1580 0.0
> Ahg472789 jgi|Araly1|472789|fgenesh2_kg.1__2743__AT1G26300.1
Length=1049
Score = 1580 bits (855), Expect = 0.0
Identities = 985/1049 (94%), Gaps = 3/1049 (0%)
Strand=Plus/Plus
Query 6 GCAATGGAGGATCTATGGAAGAGGGCAAAATCGTTCGCAGAAGAAGCGGGTAAGAAGTCT 65
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 3 GCAATGGAGGATCTATGGAAGAGAGCCAAATCGTTCGCAGAAGAAGCGGGTAAGAAATCT 62
Query 66 CAGACGATAACACAATCATCCTCCGCGACCTTCGTCAATCTCGTCACCGAGACTGCTAAG 125
||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 63 CAGACCATCACCCAATCATCCTCCGCGACGTTCGTCAATCTCGTCACCGAGACTGCTAAG 122
Query 126 AAATCCAAGGAACTCGCTCTCGAAGCTTCGAAGAAAGCTGATCAATTCAATGCCGCCGAT 185
||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct 123 AAATCCAAGGAACTCGCTCTCGAAGCTTCTAAGAAAGCCGATCAATTCAATGTTTCCGAT 182
Query 186 TTCGTTGCTGAAACGGCTAAGAAATCCAAAGAATTCGCTGCTGAAGCTTCAAAGAAGGCG 245
|||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 183 TTCGTTGCCGAAACGGCTAAAAAATCTAAAGAATTCGCTGCCGAAGCTTCAAAGAAGGCG 242
Query 246 GATCAGTTCAAAGTCGCCGCGCTGAAACAAGCTGATCAGATCCAGAACATCAAATCGATC 305
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 243 GATCAGTTCAAAGTCGCCGCGCTGAAGCAAGCTGATCAGATCCAGAACATCAAATCGATC 302
Query 306 GCTGATATAATCGGGACCGGGACCGGGTCAGGATCCGGTTCAGAAGCGGAGCTTCTCGAA 365
|||||||| |||||| ||||| | || |||||||||||||| ||||| ||||||||||||
Sbjct 303 GCTGATATTATCGGGTCCGGGTCAGGATCAGGATCCGGTTCCGAAGCAGAGCTTCTCGAA 362
Query 366 TTCGGTGTAACGGATGATTTGAGAGAGTTCGCTGAAGGCTTGACCTCTGCTACATTCCAA 425
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 363 TTCGGTGTAACGGATGATTTGAGAGAGTTCGTTGAAGGCTTGACCTCTGCTACATTCCAA 422
Query 426 GCTTTTCCTGATCAAGATCAAGGGGATGAAGTTTCCGATGTGATAACAAATGCTTCGAAT 485
||||||||||| ||||||||| |||||||||| | ||||||| ||| ||| ||||||||
Sbjct 423 GCTTTTCCTGAACAAGATCAACCGGATGAAGTTGCTGATGTGACAACGAATTCTTCGAAT 482
Query 486 GTTCGAAAGGATCTCTCGGATTGGCAAGAGAGACATGCCACTCTGGTTCTAACCTCTGTC 545
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GTTCGAAAGGATCTATCGGATTGGCAAGAGAGACATGCCACTCTGGTTCTAACCTCTGTC 542
Query 546 AAGCAAATCTCCAAGTTAAGATACGAACTTTGCCCTCGTTTCATGAAAGAAAGGAGGTTC 605
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 543 AAGCAAATCTCCAAGTTAAGATACGAACTTTGCCCGCGATTCATGAAAGAAAGGAGGTTC 602
Query 606 TGGAGGATTTATTTCACACTAGTGAGCACTCATGTTTCTCCATATGAGAGGAAGTACATG 665
|||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 603 TGGAGGATATATTTCACACTAGTGAGCACTCATGTTTCACCATATGAGAGGAGGTACATG 662
Query 666 GAGGAACTTAAGACCAAAGGAGAGCATGGAAATGAAGAAGCTAAGAAGGCTCCAGCGACT 725
|||| |||||||||||||| ||| |||| ||||||||||||||||||||| |||||||||
Sbjct 663 GAGGCACTTAAGACCAAAGCAGAACATGAAAATGAAGAAGCTAAGAAGGCCCCAGCGACT 722
Query 726 GGAGAGACAGAAACAGTAGAAAAGAATGTTGCAATCCGTAGAACATCTACTGCGTCTTCT 785
||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||
Sbjct 723 GGAGAGACAGAAACAGTGGAAAAGAATGTTGCAATCAGTAGAACATCTACTGCGACTTCT 782
Query 786 GAGCAGGATCTGGATACATTCCTGTTGGGTGATCTAGAAGACAGTGATG-AAGCTCCAGA 844
||||||||||||||||||||||| ||||| ||||| ||||||||||||| || |||||||
Sbjct 783 GAGCAGGATCTGGATACATTCCTTTTGGGAGATCTCGAAGACAGTGATGGAA-CTCCAGA 841
Query 845 TGATGGTGATGGAAGCCTTGAGGATGACTTTGACAAGATTGGAAACTCAGATGTTGAAGA 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TGATGGTGATGGAAGCCTTGAGGATGACTTTGACAAGATTGGAAACTCAGATGTTGAAGA 901
Query 905 CGAGAAGCAATCATCTAAAGCTACAACAAATGCAGGAAACGAAGTGTCTTGTTAGTTTTA 964
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 902 CGAGAAGCAATCAACTAAAGCTACAACAAATGCAGGAAACTAAGTGTCTTGTTAGTTT-A 960
Query 965 AGTTCCAATTAGAAAAGGGTAAATGAAGAAGATGCTTGAAATGTATAGTTTTGATTTAGT 1024
| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 961 ACATCCAATTAGAAAAAGGTAAATGAAGACGATGCTTGAAATGTATAGTTTTGATTTAGT 1020
Query 1025 AAGTGATGCATACGAAGACCTTGATTTCG 1053
||| || ||||| ||||||| |||||||
Sbjct 1021 AAGGGACGCATAAGAAGACCGCGATTTCG 1049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40295923269
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5