BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26310.1
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921628 jgi|Araly1|921628|scaffold_102909.1 1260 0.0
Ahg476039 jgi|Araly1|476039|fgenesh2_kg.2__1169__AT1G69120.1 684 0.0
Ahg950843 jgi|Araly1|950843|scaffold_802730.1 187 1e-46
Ahg472923 jgi|Araly1|472923|fgenesh2_kg.1__2877__AT1G24260.1 130 2e-29
Ahg896343 jgi|Araly1|896343|Al_scaffold_0005_309 89.8 4e-17
> Ahg921628 jgi|Araly1|921628|scaffold_102909.1
Length=811
Score = 1260 bits (682), Expect = 0.0
Identities = 772/814 (95%), Gaps = 11/814 (1%)
Strand=Plus/Plus
Query 74 ATTTAGTTATTTTAAGAGAAATGGGAAGGGGTAGGGTTGAATTGAAGAGGATAGAGAACA 133
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATTTAGTTATTTTACGAGAAATGGGAAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACA 60
Query 134 AGATCAATAGACAAGTGACATTCTCGAAAAGAAGAACTGGTCTTTTGAAGAAAGCTCAGG 193
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 61 AGATCAATAGACAAGTGACATTCTCTAAAAGAAGAGCTGGTCTTTTGAAGAAAGCTCAGG 120
Query 194 AGATCTCTGTTCTTTGTGATGCCGAGGTTTCCCTTATTGTCTTCTCCCATAAGGGCAAAT 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 AGATCTCTGTTCTTTGTGATGCCGAGGTTTCCCTTATTGTCTTCTCCCATAAGGGGAAAT 180
Query 254 TGTTCGAGTACTCCTCTGAATCTTGCATGGAGAAGGTACTAGAACGCTACGAGAGGTATT 313
||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 181 TGTTCGAGTACACCTCTGAATCTTGCATGGAGAAAGTACTCGAACGCTACGAGAGGTATT 240
Query 314 CTTACGCCGAGAGACAGCTGATTGCACCTGACTCTCACGTTAATGCACAGACGAACTGGT 373
| ||||||||||| |||||||||||||||||||||||| ||||||||||| |||| ||||
Sbjct 241 CGTACGCCGAGAGGCAGCTGATTGCACCTGACTCTCACATTAATGCACAGCCGAATTGGT 300
Query 374 CAATGGAGTATAGCAGGCTTAAGGCCAAGATTGAGCTTTTGGAGAGAAACCAAAGGCATT 433
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 301 CAATGGAGTATAGCAGGCTTAAGGCTAAGATCGAGCTTTTGGAGAGGAACCAAAGGCATT 360
Query 434 ATCTGGGAGAAGAGTTGGAACCAATGAGCCTCAAGGATCTCCAAAATCTGGAGCAGCAGC 493
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCTAGGAGAAGACTTGGAACCAATGAGCCTCAAGGATCTCCAAAATCTGGAGCAGCAGC 420
Query 494 TTGAGACTGCTCTTAAGCACATTCGCTCCAGAAAAAATCAACTCATGAATGAGTCCCTCA 553
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 421 TTGAGACTGCTCTTAAGCACATTCGCTCCAGAAAAAATCAACTCATGTACGAGTCCCTCA 480
Query 554 ACCACCTCCAAAGAAAGGAGAAGGAGATACAGGAGGAAAACAGCATGCTTACCAAACAGA 613
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 ACCACCTCCAAAGAAAGGAGAATGAGATACAGGAGGAAAACAGCATGCTTACCAAACAGA 540
Query 614 TAAAGGAGAGGGAAAACATCCTAAGGACA-AAACAAACCCAATGTGAGCAGCTGAACCGC 672
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 541 TAAAGGAGAGGGAAAACATCCTAAGGACACAAA-AAACCCAATGTGAGCAGCTGAACCGC 599
Query 673 AGCGTCGACGATGTACCACAGCC--A-C---AACCATTTCAACACCCCCATCTTTACATG 726
| | | |||||||||||| ||| | | |||||||||||||||| |||| |||||||
Sbjct 600 AAC--C-ACGATGTACCACCGCCGCAACCGCAACCATTTCAACACCCTCATCCTTACATG 656
Query 727 ATCGCTCATCAGACTTCTCCTTTCCTAAATATGGGTGGTTTGTACCAAGAAGAAGACCAA 786
||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||
Sbjct 657 ATCTCTCATCAGACTTCTCCTTTCCTAAATTTGGGTGGCATGTACCAAGGAGAAGATCAA 716
Query 787 ACGGCGATGAGGAGGAACAATCTGGATCTGACTCTTGAACCCATTTACAATTACCTTGGC 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 ACGGCGATGAGGAGGAACAATCTGGATCTGACTCTTGAACCCATTTACAATTACCTTGGC 776
Query 847 TGTTACGCCGCTTGAATAGACTACATCGATCTAT 880
||||||||||||||||||||||||||||||||||
Sbjct 777 TGTTACGCCGCTTGAATAGACTACATCGATCTAT 810
> Ahg476039 jgi|Araly1|476039|fgenesh2_kg.2__1169__AT1G69120.1
Length=1228
Score = 684 bits (370), Expect = 0.0
Identities = 657/791 (83%), Gaps = 37/791 (5%)
Strand=Plus/Plus
Query 92 AAATGGGAAGGGGTAGGGTTGAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGA 151
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 210 AAATGGGGAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGA 269
Query 152 CATTCTCGAAAAGAAGAACTGGTCTTTTGAAGAAAGCTCAGGAGATCTCTGTTCTTTGTG 211
||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||
Sbjct 270 CATTCTCGAAAAGAAGAGCTGGTCTTTTGAAGAAAGCTCATGAGATCTCTGTTCTCTGTG 329
Query 212 ATGCCGAGGTTTCCCTTATTGTCTTCTCCCATAAGGGCAAATTGTTCGAGTACTCCTCTG 271
|||| || ||| | ||| ||||||||||||||||||| ||| | ||||| |||||| |||
Sbjct 330 ATGCTGAAGTTGCTCTTGTTGTCTTCTCCCATAAGGGGAAACTCTTCGAATACTCCACTG 389
Query 272 AATCTTGCATGGAGAAGGTACTAGAACGCTACGAGAGGTATTCTTACGCCGAGAGACAGC 331
| ||||| ||||||||| |||| |||||||| |||||||| |||||||||||||||||||
Sbjct 390 ATTCTTGTATGGAGAAGATACTTGAACGCTATGAGAGGTACTCTTACGCCGAGAGACAGC 449
Query 332 TGATTGCACCTGACTCTCACGTTAATGCACAGACGAACTGGTCAATGGAGTATAGCAGGC 391
| ||||||||||| ||| | || ||| || || | |||||| |||||||||| |||||
Sbjct 450 TTATTGCACCTGAGTCTGATGTCAAT--AC-GA--A-CTGGTCGATGGAGTATAACAGGC 503
Query 392 TTAAGGCCAAGATTGAGCTTTTGGAGAGAAACCAAAGGCATTATCT-GGGAGAAGAGTTG 450
||||||| |||||||| ||||||||||||||||| ||||||||||| ||| ||||| |||
Sbjct 504 TTAAGGCTAAGATTGAACTTTTGGAGAGAAACCAGAGGCATTATCTTGGG-GAAGACTTG 562
Query 451 GAAC-CAATGAGCC-TCAAGGATCTCCAAAATCTGGAGCAGCAGCTTGAGACTGCTCTTA 508
|| ||||||||| | ||||| || || |||||||||||||||||||| ||||||||||
Sbjct 563 -AATGCAATGAGCCCT-AAGGAGCTTCAGAATCTGGAGCAGCAGCTTGACACTGCTCTTA 620
Query 509 AGCACATTCGCTCCAGAAAAAATCAACTCATGAATGAGTCCCTCAACCACCTCCAAAGAA 568
||||||| ||| | |||||||| ||||| ||| | || ||| |||| | ||||||||||
Sbjct 621 AGCACATCCGCACTAGAAAAAACCAACTTATGTACGAATCCATCAATGAGCTCCAAAGAA 680
Query 569 AGGAGAAGGAGATACAGGAGGAAAACAGCATGCTTACCAAACAGATAAAGGAGAGGGAAA 628
||||||||| ||||||||| |||||||||||||| | |||||||| |||||||||||||
Sbjct 681 AGGAGAAGGCCATACAGGAGCAAAACAGCATGCTTTCTAAACAGATCAAGGAGAGGGAAA 740
Query 629 ACATCCTAAGGACAAAACAA-ACCCAATGTGAGCAGCTGAACCGCAGCGTCGACGATG-- 685
| || || ||| | ||||| | | | || || |||| ||||| || | | |||
Sbjct 741 AAATTCTTAGGGCTCAACAAGAGC-AGTGGGATCAGCAGAACCATGGCCACAAT-ATGCC 798
Query 686 TACCAC---A--GCCACAAC--CATTTCAACACCCC-CATCTTTACATGATCGCTCATCA 737
| || | | ||| || | ||| ||| | || |||| ||||||| || |||||||
Sbjct 799 TCCCCCTCCACCGCCGCAGCAGCAT--CAA-ATCCAGCATCCTTACATGCTCTCTCATCA 855
Query 738 GACTTCTCCTTTCCTAAATATGGGTGGTTTGTACCAAGAAGAAGA-CCAAACGGCGATGA 796
| | |||||||| || || ||||||||| |||| ||||||||||| |||| ||| ||||
Sbjct 856 GCCATCTCCTTTTCTTAACATGGGTGGTCTGTATCAAGAAGAAGATCCAAT-GGCAATGA 914
Query 797 GGAGGAAC-AATCTGGATCTGACTCTTGAACCCATTTACAATT--A-CCTTGGCTG-TTA 851
|||||||| || || || |||||||||||||| ||||||| | | ||||||||| ||
Sbjct 915 GGAGGAACGAA-CTCGAACTGACTCTTGAACCTGTTTACAACTGCAACCTTGGCTGCTT- 972
Query 852 CGCCGCTTGAA 862
|||||| ||||
Sbjct 973 CGCCGCATGAA 983
> Ahg950843 jgi|Araly1|950843|scaffold_802730.1
Length=869
Score = 187 bits (101), Expect = 1e-46
Identities = 182/220 (83%), Gaps = 10/220 (5%)
Strand=Plus/Plus
Query 88 AGAGAAATGGGAAGGGGTAGGGTTGAATTGAAGAGGATAGAGAACAAGATCAATAGACAA 147
||||| |||||||| ||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 114 AGAGAGATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAA 173
Query 148 GTGACATTCTCGAAA-AGAAGAACTGGTCTTT-TGAAGAAAGCTCAGGAGATCTCTGTTC 205
|| || ||||| ||| ||||| ||||| || | ||||||||||| |||||||||||||
Sbjct 174 GTTACTTTCTC-AAAGAGAAGGTCTGGT-TTGCTCAAGAAAGCTCATGAGATCTCTGTTC 231
Query 206 TTTGTGATGCCGAGGTTTCCCTTATTGTCTTCTC--CCATAAGGGCAAATTGTTCGAGTA 263
| || ||||| |||||| | || || |||||||| ||| |||| |||| | ||||| ||
Sbjct 232 TCTGCGATGCTGAGGTTGCTCTCATCGTCTTCTCTTCCA-AAGG-CAAACTCTTCGAATA 289
Query 264 CTCCTCTGAATCTTGCATGGAGAAGG-TACTAGAACGCTA 302
||| | || ||||||||||||| || |||| ||||||||
Sbjct 290 TTCCACCGACTCTTGCATGGAGA-GGATACTTGAACGCTA 328
> Ahg472923 jgi|Araly1|472923|fgenesh2_kg.1__2877__AT1G24260.1
Length=924
Score = 130 bits (70), Expect = 2e-29
Identities = 127/153 (83%), Gaps = 10/153 (7%)
Strand=Plus/Plus
Query 92 AAATGGGAAG-GGGTAGGGTTGAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTG 150
|||||||||| ||| || || |||||||||||||||||||||||||||||||| ||||||
Sbjct 38 AAATGGGAAGAGGG-AGAGTAGAATTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTG 96
Query 151 ACATTCT-CGAAA-AGAAG-AACTGGTCTTTTGAAGAAAGC-TCAGGAGATCTCTGTTCT 206
|| || | | ||| ||||| || |||||||||||||||||| | | ||| | || |||||
Sbjct 97 ACGTT-TGC-AAAGAGAAGGAA-TGGTCTTTTGAAGAAAGCAT-ACGAGCTTTCAGTTCT 152
Query 207 TTGTGATGCCGAGGTTTCCCTTATTGTCTTCTC 239
|||||||| || ||| | || || |||||||
Sbjct 153 ATGTGATGCAGAAGTTGCTCTCATCATCTTCTC 185
> Ahg896343 jgi|Araly1|896343|Al_scaffold_0005_309
Length=807
Score = 89.8 bits (48), Expect = 4e-17
Identities = 104/130 (80%), Gaps = 8/130 (6%)
Strand=Plus/Plus
Query 94 ATGGGAAGGGGTAGGGTTGAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACA 153
|||||||| || | || || |||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGGAAGAGGAAAAGTGGAGCTGAAGAGGATAGAGAACAAGATCAATAGACAAGTTACT 60
Query 154 TTCT-CGAAA-AGAAG-AACTGGTCTTT-TGAAGAAAGCTCAGGAGATCTCTGTTCTTTG 209
|| | | ||| ||||| || |||| || | ||||| ||| | ||| | ||||| |||||
Sbjct 61 TT-TGC-AAAGAGAAGGAA-TGGT-TTGCTCAAGAAGGCTTATGAGCTTTCTGTCCTTTG 116
Query 210 TGATGCCGAG 219
|||||| |||
Sbjct 117 TGATGCTGAG 126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38618514921
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5