BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26340.1
Length=722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472784 jgi|Araly1|472784|fgenesh2_kg.1__2738__AT1G26340.1 889 0.0
> Ahg472784 jgi|Araly1|472784|fgenesh2_kg.1__2738__AT1G26340.1
Length=681
Score = 889 bits (481), Expect = 0.0
Identities = 646/718 (90%), Gaps = 41/718 (6%)
Strand=Plus/Plus
Query 7 GCGTGGTCGACCAAACCTAAAACCCCC-AAAAAGAGAAAAATC-AAAGACCATTCGCTAT 64
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1 GCGTGGTCGACCAAACCTAAAACCCCCAAAAAAGAGAAAAATCGAAAGACCATTCGC--- 57
Query 65 TTCGCTCGCTACTCAGTTTCAGAAGAAGATGCCGACACTCACAAAGCTTTATTCCATGGA 124
| || | | | || |||||||||||||||| |||||||||||||||||||||||
Sbjct 58 -T--CT-G-T--T-AG----AGAAGAAGATGCCGACTCTCACAAAGCTTTATTCCATGGA 105
Query 125 AGAAGCCGCAACTCACAACAAGCAAGATGACTGCTGGGTCGTCATCGACGGCAAGGTCTA 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 AGAAGCCGCAACTCACAACAAGCAAGATGACTGCTGGGTCGTCATCGACGGCAAGGTCTA 165
Query 185 TGATGTATCCTCTTATATGGATGAGCATCCTGGAGGAGATGATGTGCTTCTTGCTGTCGC 244
||| ||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 166 TGACGTAACCTCGTATATGGATGAGCATCCCGGAGGAGATGATGTGCTTCTTGCTGTCAC 225
Query 245 AGGCAAAGATGCAACGGATGATTTTGAAGACGCAGGGCACAGCAAAGATGCTAGGGAACT 304
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 CGGCAAAGATGCAACAGATGATTTTGAAGACGCAGGGCACAGCAAAGATGCTAGGGAACT 285
Query 305 TATGGAGAAGTATTTTATTGGCGAGCTAGATGAATCTTCTTTACCGGAAATACCTGAGCT 364
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 286 CATGGAGAAGTATTTTATCGGCGAGCTAGACGAATCTTCTTTACCGGAAATACCTGAGCT 345
Query 365 TAAGATCTACAAGAAGGACCAGCCA-CAAGACTCTGTTCAGAAGCTTTTTGACTTGACAA 423
|||||||||||||||||| |||||| || ||||||||||| |||||| ||||||||||||
Sbjct 346 TAAGATCTACAAGAAGGAGCAGCCAACA-GACTCTGTTCAAAAGCTTGTTGACTTGACAA 404
Query 424 AGCAGTATTGGGTTGTTCCTGTCTCCATTATCACCATCTCTGTAGCGGTTAGTGTCTTGT 483
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 405 AGCAGTATTGGGTTGTTCCTGTTTCCATCATCACCATCTCTGTAGCGGTTAGTGTCTTGT 464
Query 484 TCTCTCGCAAGACTTAATAAGTAGTAGTCTCTTTCTTACCTTGATATGCTCTGGGATATT 543
|||||||||||| ||||||||||||||| ||||||| |||||| |||||||| |||||
Sbjct 465 TCTCTCGCAAGAGATAATAAGTAGTAGTCACTTTCTTGCCTTGAGATGCTCTGAAATATT 524
Query 544 GAATTACTTGGGGAATCAACTTTACACCCCCATTATAGATTTTTTGAATAACAGATATGA 603
|||||||| ||||||||||||||||||||||||||||||||||| | || ||
Sbjct 525 GAATTACT-GGGGAATCAACTTTACACCCCCATTATAGATTTTT--A------GA---GA 572
Query 604 TAGAGAGATAATTGTTATTTTTCATTTTTATCAGATTTTGAGTTGAGATCATGTTTCAAT 663
| | | ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 573 TC-AC---T----GTTATTTTTCATTTTCATCAGATTTTGAGTTGAGATCATGTTTCAAT 624
Query 664 ACACTTATTA-TCGATATGATTATATATGATTAATGGATGGTTTGGTTTGCTGGTATC 720
||| |||| | ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 625 ACAAAAATTAAT-GATATGAATATATATGATTAATGGATGGTTTGGTTTGCTTGTATC 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26571673149
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5