BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G26340.1 Length=722 Score E Sequences producing significant alignments: (Bits) Value Ahg472784 jgi|Araly1|472784|fgenesh2_kg.1__2738__AT1G26340.1 889 0.0 > Ahg472784 jgi|Araly1|472784|fgenesh2_kg.1__2738__AT1G26340.1 Length=681 Score = 889 bits (481), Expect = 0.0 Identities = 646/718 (90%), Gaps = 41/718 (6%) Strand=Plus/Plus Query 7 GCGTGGTCGACCAAACCTAAAACCCCC-AAAAAGAGAAAAATC-AAAGACCATTCGCTAT 64 ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 1 GCGTGGTCGACCAAACCTAAAACCCCCAAAAAAGAGAAAAATCGAAAGACCATTCGC--- 57 Query 65 TTCGCTCGCTACTCAGTTTCAGAAGAAGATGCCGACACTCACAAAGCTTTATTCCATGGA 124 | || | | | || |||||||||||||||| ||||||||||||||||||||||| Sbjct 58 -T--CT-G-T--T-AG----AGAAGAAGATGCCGACTCTCACAAAGCTTTATTCCATGGA 105 Query 125 AGAAGCCGCAACTCACAACAAGCAAGATGACTGCTGGGTCGTCATCGACGGCAAGGTCTA 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 106 AGAAGCCGCAACTCACAACAAGCAAGATGACTGCTGGGTCGTCATCGACGGCAAGGTCTA 165 Query 185 TGATGTATCCTCTTATATGGATGAGCATCCTGGAGGAGATGATGTGCTTCTTGCTGTCGC 244 ||| ||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 166 TGACGTAACCTCGTATATGGATGAGCATCCCGGAGGAGATGATGTGCTTCTTGCTGTCAC 225 Query 245 AGGCAAAGATGCAACGGATGATTTTGAAGACGCAGGGCACAGCAAAGATGCTAGGGAACT 304 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 226 CGGCAAAGATGCAACAGATGATTTTGAAGACGCAGGGCACAGCAAAGATGCTAGGGAACT 285 Query 305 TATGGAGAAGTATTTTATTGGCGAGCTAGATGAATCTTCTTTACCGGAAATACCTGAGCT 364 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 286 CATGGAGAAGTATTTTATCGGCGAGCTAGACGAATCTTCTTTACCGGAAATACCTGAGCT 345 Query 365 TAAGATCTACAAGAAGGACCAGCCA-CAAGACTCTGTTCAGAAGCTTTTTGACTTGACAA 423 |||||||||||||||||| |||||| || ||||||||||| |||||| |||||||||||| Sbjct 346 TAAGATCTACAAGAAGGAGCAGCCAACA-GACTCTGTTCAAAAGCTTGTTGACTTGACAA 404 Query 424 AGCAGTATTGGGTTGTTCCTGTCTCCATTATCACCATCTCTGTAGCGGTTAGTGTCTTGT 483 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 405 AGCAGTATTGGGTTGTTCCTGTTTCCATCATCACCATCTCTGTAGCGGTTAGTGTCTTGT 464 Query 484 TCTCTCGCAAGACTTAATAAGTAGTAGTCTCTTTCTTACCTTGATATGCTCTGGGATATT 543 |||||||||||| ||||||||||||||| ||||||| |||||| |||||||| ||||| Sbjct 465 TCTCTCGCAAGAGATAATAAGTAGTAGTCACTTTCTTGCCTTGAGATGCTCTGAAATATT 524 Query 544 GAATTACTTGGGGAATCAACTTTACACCCCCATTATAGATTTTTTGAATAACAGATATGA 603 |||||||| ||||||||||||||||||||||||||||||||||| | || || Sbjct 525 GAATTACT-GGGGAATCAACTTTACACCCCCATTATAGATTTTT--A------GA---GA 572 Query 604 TAGAGAGATAATTGTTATTTTTCATTTTTATCAGATTTTGAGTTGAGATCATGTTTCAAT 663 | | | ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 573 TC-AC---T----GTTATTTTTCATTTTCATCAGATTTTGAGTTGAGATCATGTTTCAAT 624 Query 664 ACACTTATTA-TCGATATGATTATATATGATTAATGGATGGTTTGGTTTGCTGGTATC 720 ||| |||| | ||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 625 ACAAAAATTAAT-GATATGAATATATATGATTAATGGATGGTTTGGTTTGCTTGTATC 681 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26571673149 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5