BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26360.1
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912415 jgi|Araly1|912415|Al_scaffold_0001_2669 2137 0.0
Ahg476051 jgi|Araly1|476051|fgenesh2_kg.2__1181__AT1G69240.1 1009 0.0
> Ahg912415 jgi|Araly1|912415|Al_scaffold_0001_2669
Length=1332
Score = 2137 bits (1157), Expect = 0.0
Identities = 1275/1333 (96%), Gaps = 3/1333 (0%)
Strand=Plus/Plus
Query 15 ATGGGGAACTCGTTCACATGCATATCTCACGAGCAGGAACAACGTCCCAAGAAATCTTCC 74
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1 ATGGGGAACTCGTTCACATGCATATCTCACGAGCAAGAACAACGTCCCAAGAAATCCTCC 60
Query 75 GGCGGAGGAGGAAATAACTCCGGGAAATACAAATACGTGCGTCGTCTGTCGCTGATGCCT 134
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCGGAGGAAGAAGTAACTCCGGGAAATACAAATACGTGCGTCGTCTGTCGCTGATGCCT 120
Query 135 TCATTTAGAAGGAGGACGCTACTTCCTTCGCTCTCCTGCTCTGGATCATCATCCACTTCG 194
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 TCATTTAGAAGGCGGACGCTACTTCCTTCGCTCTCCTGCTCTGGATCATCATCCACTACG 180
Query 195 TCTTCCAAGAAAGGCGGGATCAAAGCAAAGACGAAGAAGATAAGAGAGAGAcatcatcat 254
|| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 181 TCGTCCAAGAAAGGCGGGATCAAAGCAAAGACGAAGAAGATAAGAGAGAG--A-CATCAT 237
Query 255 catcatcaAGACCACGAAAAAGACTCTCATATAATTCAAGAGCAGACACTAGCAGCCACT 314
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 238 CATCATCAAGACCACGAAAAAGACTCTCATATAATTCAGGAGCAAACACTAGCAGCCACT 297
Query 315 AATCTCCTCTTCAACCAAACCCCTCGTAACAGCAACTCTGTTGTTCCTCCTAGTTTCAGA 374
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 298 AATCTCCTCTTCAACCAAACCCCTCGTAGCAGCAACTCTGTTGTTCCTCCTAGTTTCAGA 357
Query 375 CGCTCCACCTCTGTTGTATATCCCTCTGCTCAGCCATCGGGTACCAGCTCAGGACCCGTT 434
||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 358 CGCTCCACCTCCGTTGTCTATCCCTCGGCTCAGCCATCGGGTACCAGCTCAGGACCTGTT 417
Query 435 TCAGCCGTCCAGACTCCTAAGAAGTCAAGCGCGGGATTCGTAAGAAGCTCTAGCTCTAGG 494
| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 418 TTAGCGGTCCAGACTCCTAAGAAGTCAAACGCGGGATTCGTAAGAAGCTCTAGCTCTAGA 477
Query 495 CAAAGGTCCAGTACCGATCCCATGATCAAGCCTAACCAGCTCGTTGACAAGGAGCTAAAT 554
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 478 CAAAGGTCCAGTACCGATCCCTTGATCAAGCCTAACCAGCTCGTTGACAAGGAGCTAAAT 537
Query 555 AAGGTGGAAGGTTCGGAGACGAAGCGGTTTGTGCTGGTTCATGGTGGTGGGTTCGGAGCT 614
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 538 AAGGTGGAAGGTTCGGAGACGAAGCGGTTCGTGCTGGTTCATGGTGGTGGATTCGGAGCA 597
Query 615 TGGTGTTGGTACAAAACCATAACTCTTTTAGAGAAGCATGGTTTCCAAGTCGATGCTGTT 674
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 598 TGGTGTTGGTACAAAACCATAACGCTCTTAGAGAAACATGGTTTCCAAGTCGATGCTGTT 657
Query 675 GAGTTGACCGGTTCAGGTGTGAGCTCGATTGACACAAACAACATCACCAGCCTCGCTCAC 734
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 658 GACTTGACCGGTTCAGGTGTGAGCTCTATTGACACCAACAACATCACCAGCCTTGCTCAC 717
Query 735 TACTCCAAGCCTCTCCTCCATTTCTTCGAATCCCTCAAACCCACCGAGAAGGTGATACTG 794
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||
Sbjct 718 TACTCCAAGCCTCTCCTCCACTTCTTTGAATCCCTTAAACCCACCGAGAAGGTGATATTG 777
Query 795 GTGGGACATGATTTTGGAGGAGCTTGTATGTCCTATGCGATGGAGATGTTTCCTACAAAG 854
||||| |||||||||||||||||||||||||| ||||| ||||| ||||| ||||| |||
Sbjct 778 GTGGGGCATGATTTTGGAGGAGCTTGTATGTCTTATGCTATGGAAATGTTCCCTACTAAG 837
Query 855 ATCGCCAAAGCTGTCTTTATCTCTGCTGCTATGTTGGCTAATGGCCAAAGCACTCTTGAT 914
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 838 ATCGCCAAAGCTGTCTTTATCTCTGCTGCTATGTTGGCTAATGGCCAGAGCACTCTTGAT 897
Query 915 CTCTTTAATCAACAGCTGGGGTCAAATGATCTGATGCAACAAGCACAGATATTTCTGTAC 974
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 898 CTCTTTAATCAACAGGTGGGGTCAAATGATCTGATGCAACAAGCACAGATCTTTCTATAC 957
Query 975 GCCAACGGCAAAAAGAATCCTCCAACTGCCGTTGATTTTGACAGATCTTTGCTTAGAGAC 1034
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 958 GCCAACGGCAAAAAGAATCCTCCAACAGCCGTTGATTTCGACAGATCTTTGCTTAGAGAC 1017
Query 1035 TTTCTCTTTAATCAAAGCCCTCCAAAGGACCTCGCATTGGCATCGGTATCCATTAGACCG 1094
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1018 TTTCTCTTCAATCAAAGCCCTCCAAAGGACCTCGCATTGGCCTCGGTATCCATTAGACCG 1077
Query 1095 ATCCCATTCGCACCGGTCAGCGAAAAGGTTCACGTGTCGGAGAAAAACTACGGTTCTATC 1154
||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1078 ATCCCGTTCGCACCGGTCAGCGAAAAAGTTCACTTGTCGGAGAAAAACTACGGTTCTATC 1137
Query 1155 CGACGGTTCTACATCAAAACCATGGAAGATTACGCTGTACCGGTTCTTCTCCAGGAAGCA 1214
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1138 CGACGGTTCTACATCAAAACCATGGAGGATTACGCTGTACCGGTTCTTCTCCAGGAAGCA 1197
Query 1215 ATGATCAAATTGAACCCACCGGAACAAGTTTTTCAGCTCAAAGGCTCCGATCACGCACCG 1274
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ATGATCAAATTAAACCCACCGGAACAAGTTTTTCAGCTCAAAGGCTCCGATCACGCACCG 1257
Query 1275 TTCTTCTCTCGGCCTCAGTCCTTGAACAAAATCCTCGTCGAGATATCTCAAATACCGTTC 1334
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1258 TTCTTCTCTCGGCCTCAATCCTTGAACCGAATCCTCGTCGAGATATCTCAAATACCGTTC 1317
Query 1335 AAGAAATCATCCT 1347
|||||||||||||
Sbjct 1318 AAGAAATCATCCT 1330
> Ahg476051 jgi|Araly1|476051|fgenesh2_kg.2__1181__AT1G69240.1
Length=1423
Score = 1009 bits (546), Expect = 0.0
Identities = 1016/1233 (82%), Gaps = 72/1233 (6%)
Strand=Plus/Plus
Query 154 TACTTCCTTCGCTCTCCTGCTCTGGATCATCATCCACTTCGTCT---TCCAAGAAAGGCG 210
||||||| || ||||| ||||| ||||| | || ||||||||| ||||||||||| |
Sbjct 143 TACTTCCATCTCTCTCTTGCTCCGGATC--C-TCAACTTCGTCTACGTCCAAGAAAGGAG 199
Query 211 GGATCAAAG-CAAAGACGAAGAAGATAAGAGAGAGAcatcatc---atcatcatcaAGAC 266
||||| ||| |||| | || ||||| ||||| ||||| || | | |||||||| ||
Sbjct 200 GGATC-AAGACAAA-A--AAAAAGATCAGAGAAAGACACCACCAAGAGCATCATCATGAT 255
Query 267 CACGAAAAAGACTCTCATATAATTCAAGAGCAGACAC-TAGCAGCCACTAATCTCCTCTT 325
||||| |||||||||| |||| ||||| || || | |||| ||||||||| |||||||
Sbjct 256 CACGAGAAAGACTCTC---TAATCCAAGAACAAAC-CTTAGCCGCCACTAATATCCTCTT 311
Query 326 CAACCAAACCCCTCGTAACAGCAACTCTGTTGTTCCTCCTAGTTTCAGACGCTCCACCTC 385
| |||||| ||||||||||||||||| || |||||| |||| |||||||||||||
Sbjct 312 TAGCCAAACGCCTCGTAACAGCAACTC---TGCTCCTCC---TTTCCGACGCTCCACCTC 365
Query 386 TGTTGTATATCCCTCTGCTCAGC-CAT--CG-GGTA-CCAG-CT-C--AGGACCCGTTTC 436
|| || || | ||| || || | | | || ||| || | || | ||| | |||||
Sbjct 366 CGTCGTTTA-CACTCAGC-CACCTCCTGCCGCTGTAGCC-GCCTCCGTAGGTTCTGTTTC 422
Query 437 AGCCGTCC-AGACTCCTAAGAAGTCAAGC-GCGGGATTCGTAAGAAGCTCTAGCT-CTAG 493
| || || |||||||||||| || | | |||| ||| ||||| ||||| | |||
Sbjct 423 CGGCG-CCTTGACTCCTAAGAAATCCA-CTTATGGATACGTTAGAAGTTCTAG-TAATAG 479
Query 494 GCAAAGGTCCAGTACCGATCCCATGATC--AAGCCTAACCAGCTCGTTGACAAGGAGCTA 551
||| || || || |||||| || || || || || || |||||| | |||||||||||
Sbjct 480 GCAGAGATCAAGCACCGAT-CC-TGTTCTTAAACCCAATCAGCTCCTAGACAAGGAGCT- 536
Query 552 AATAAGGTGGAAGGTTCGGAGACGAAGCGGTTTGTGCTGGTTCATGGTGGTGGGTTCGGA 611
| |||||||||||| |||||||||||||||| || ||||||||||| || ||||| ||
Sbjct 537 -A-AAGGTGGAAGGTGCGGAGACGAAGCGGTTCGTCCTGGTTCATGGAGGAGGGTTTGGT 594
Query 612 GCTTGGTGTTGGTACAAAACCATAACTCTTTTAGAGAAGCATGGTTTCCAAGTCGATGCT 671
|| ||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||
Sbjct 595 GCATGGTGTTGGTACAAAACCATAACGCTCTTAGAGAAACATGGTTTCCAAGTCGACGCC 654
Query 672 GTTGAGTTGACCGGTTCAGGTGTGAGCTCGATT-GACACAAACAACATCACCAGCCTCGC 730
||||| ||||| ||||| ||||| ||||| || || |||||||||||||| ||||||||
Sbjct 655 GTTGACTTGACTGGTTCTGGTGTCAGCTC-TTTCGATACAAACAACATCACTAGCCTCGC 713
Query 731 TCACTAC-TCCAAGCCTCTCCTCCATTTCTTCGA-ATCCCTCAAACCCACCGAGAAGGTG 788
||| ||| | ||| || |||||||| |||||||| | |||| ||||||||||||||||||
Sbjct 714 TCAATACGT-CAAACCCCTCCTCCACTTCTTCGACA-CCCTTAAACCCACCGAGAAGGTG 771
Query 789 ATACTGGTGGGACATGATTTTGGAGGAGCTTGTATGTCCTATGCGATGGAGATGTTTCCT 848
||| | ||||| |||||||||||||| ||||||||||| ||||| |||||||||| |||
Sbjct 772 ATATTAGTGGGGCATGATTTTGGAGGTGCTTGTATGTCTTATGCCATGGAGATGTACCCT 831
Query 849 ACAAAGATCGCCAAAGCTGTCTTTATCTCTGCTGCTATGTTGGCTAATGGCCAAAGCACT 908
| |||||| | || ||| |||| ||||||||||||||||||||||||| ||||||||||
Sbjct 832 TCTAAGATCTCGAAGGCTATCTTCATCTCTGCTGCTATGTTGGCTAATGCCCAAAGCACT 891
Query 909 CTTGATCTCTTTAATCAACAG-CTGGGGTC-AA--ATGATCTGATGCAACAAG-CACAGA 963
|||||||||||||| |||||| || | || || ||||||||||| |||||| | ||
Sbjct 892 CTTGATCTCTTTAACCAACAGCCT-GACTCAAATTATGATCTGATGGAACAAGTC-CATC 949
Query 964 TATTTCTGTACGCCAACGGCAAAAAGAATCCTCCAACTGCCGTTGATTTTGACAGATCTT 1023
||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||
Sbjct 950 TATTTCTGTACGCCAACGGAAAAAAGAACCCTCCAACAGCCGTTGATTTCGACAGATCTT 1009
Query 1024 TGCTTAGAGACTTTCTCTTTAATCAAAGCCCTCCAAAGGACCTCGCATTGGCATCGGTAT 1083
|||||||||||||| |||||||||| ||||||||||||||| | ||||| || |||||||
Sbjct 1010 TGCTTAGAGACTTTTTCTTTAATCAGAGCCCTCCAAAGGACGTTGCATTAGCGTCGGTAT 1069
Query 1084 CCATTAGACCGATCCCATTCGCACCGGTCAG-CGAAAAGGTTCACGTGTCGGAGAAAAAC 1142
|||| ||||||||||| ||||| || || | ||||||| ||||||||||||||||||||
Sbjct 1070 CCATGAGACCGATCCCGTTCGCGCCAGT-GGTCGAAAAGCTTCACGTGTCGGAGAAAAAC 1128
Query 1143 TACGGTTCTATCCGACGGTTCTACATCAAAACCATGGA--A-GATTACGCTGTACCGGTT 1199
|||||||| |||||| |||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1129 TACGGTTCAATCCGAAGGTTCTACATCAAAACCATGGAGGATGATTACGCTGTACCGGTT 1188
Query 1200 -CTTCTCCAGGAAGCAATGATCAAATTGAACCCACCGGAACAAGTTTTTCAGCTCAAAGG 1258
|| || || || ||||||||||||| ||| || || ||||||||||| || ||||||||
Sbjct 1189 TCT-CTACAAGATGCAATGATCAAATCGAATCCTCCTGAACAAGTTTTCCATCTCAAAGG 1247
Query 1259 CTCCGATCACGCACCGTTCTTCTCTCGGCCTCAGTCCTTGAACAAAATCCTCGTCGAGAT 1318
||| ||||| ||||| ||||||||||| |||||||| |||||| ||| |||||||||||
Sbjct 1248 CTCTGATCATGCACCATTCTTCTCTCGTCCTCAGTCTTTGAACCGAATACTCGTCGAGAT 1307
Query 1319 ATCTCAAATACCGTTC-AAGAAATCATCCTGAT 1350
|||||| |||| | | |||||||| || ||||
Sbjct 1308 TTCTCAATTACC-TCCCAAGAAATCTTCTTGAT 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53173982020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5