BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26440.3
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313345 jgi|Araly1|313345|fgenesh1_pm.C_scaffold_1002125 1984 0.0
> Ahg313345 jgi|Araly1|313345|fgenesh1_pm.C_scaffold_1002125
Length=1233
Score = 1984 bits (1074), Expect = 0.0
Identities = 1188/1241 (96%), Gaps = 15/1241 (1%)
Strand=Plus/Plus
Query 89 ATGATGATAGCTCAAGAATTGGGAATATATGTTGTGGAGAGCAAAGGAGGAGCAATATTA 148
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1 ATGATGATAGCTCAAGGATTGGGAATATATGTGGTGGAGAGCAAAGGAGGAGCAATTTTT 60
Query 149 TGTCTATTGCTTTCTCTGCTCTGTTTAGGCACTTGGCCTGCTCTTATGGCTCTTCTTGAA 208
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTATATTGCTTTCTCTGCTCTGTTTAGGCACTTGGCCTGCTCTTATGGCTCTTCTTGAA 120
Query 209 CGGCGTGGTCGTCTCCCACAACATACTTATCTTGATTATTCCATCACTAACTTTTTGGCT 268
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 CGGCGTGGTCGTCTCCCACAACATACTTATCTTGATTATTCCATCACTAACTTCTTGGCT 180
Query 269 GCAATCTTTATAGCCTTTGTGTTTGGTGGGATAGGTGAAAGTACACATGAGGCACCAAGT 328
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 181 GCAATCTTTATAGCCTTTGTGTTTGGTGGGCTTGGTGAAAGTACACATGAGGCACCAAGT 240
Query 329 TTCATTACACAACTCACTCAGATTCAAGATAATTGGCCCTCTGTGTTGTTTGCAATGGCG 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCATTACACAACTCACTCAGATTCAAGATAATTGGCCCTCTGTGTTGTTTGCAATGGCG 300
Query 389 GGTGGGGTTGGTTTAAGTATTGGAAACCTTGCTACTCAGTATTCTTTAGCTTTTGTTGGT 448
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 301 GGTGGGGTGGGTTTAAGTATTGGGAATCTTGCTACTCAGTATTCTTTAGCTTTTGTTGGT 360
Query 449 CTGTCTGTTACAGAAGTGACAGCTGCGAGCATCACCGTTGTTGTAGGCACTACTGTCAAT 508
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 361 CTGTCTGTTACAGAAGTGACAACTGCGAGCATCACCGTTGTTGTAGGCACCACTGTCAAT 420
Query 509 TACTTTTTGGACAACGGATTGAACAGAGCTGATATTCTTTTCTCTGGTGTTGGTTGCTTC 568
|||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 421 TACTTTTTGGACAATAGATTGAACCGAGCTGATATTCTTTTCTCTGGTGTTGGCTGCTTC 480
Query 569 ATGGTAGCTGTTTGTCTTGGTTCTGCTGTTCACTCTTCCAATTCTGCTGATATCA-AGGC 627
||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 481 TTGGTAGCTGTTTGTCTTGGTTCTGCGGTTCACTCTTCCAATTCTGCTGATAT-AGAGGC 539
Query 628 GAAACTCGGAAAACTCTCAGGGGATTGTGAAACTGT-GACCCCTGAAGAGTGCCAGAGAC 686
|||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 540 GAAACTCGGAAAACTCTCAGGGGATTGTGAAACTGTGGA-TCCGGAAGAGTGCCAGAGAC 598
Query 687 TATTTGGAGTagaagaagaagaagaagaagaaaaagagaTGGAGAATGTAAAGGAAGGGT 746
|||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 599 TATTTGGAGT---------AGAAGAAGAAGAAAAAGAGATGGAGAATGTTAAGGAAGGGA 649
Query 747 CTGCAGCTTTTCTTATAGCACTCGAAAACAAAAGAGCAATCAAAGTGTTAGGAAAGAGCA 806
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 650 CTGCAGCTTTTCTTATAGCACTCGAAAACACAAGAGCAATTAAAGTGTTAGGAAAGAGCA 709
Query 807 TGGTTGTTGGTCTGGGAATAACtttttttGCAGGACTTTCTTTCTCATTGTTCTCACCAC 866
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 710 TGGTTGTTGGTCTGGGGATAACTTTCTTTGCAGGACTTTCTTTCTCATTGTTCTCACCAC 769
Query 867 TATTCAACCTTGCAACAAACGATCAATGGCACACTCTAAAACAAGGCGTTCCCAAGCTGA 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TATTCAACCTTGCAACAAACGATCAATGGCACACTCTAAAACAAGGCGTTCCCAAGCTGA 829
Query 927 TTGTCTACACTGCGTTCTTCTACTTCTCACTATCTTGCTTTGTAATCGCGGTCGCTCTCA 986
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 830 TTGTCTACACCGCGTTCTTCTACTTCTCACTATCTTGCTTTGTAATCGCCGTCGCTCTCA 889
Query 987 ACATTAGTTTCCTGTACAAACCTGTGCTAGACTCACCAAGATCTTCCTTTAGAG-AATAC 1045
||||||| |||||||||||||||||||| |||||||||||||||||||||| || |||||
Sbjct 890 ACATTAGGTTCCTGTACAAACCTGTGCTCGACTCACCAAGATCTTCCTTTA-AGGAATAC 948
Query 1046 CTGAGTGACTGGAACGGAAGAGGTTGGGCACTTGCAGCTGGATTGTTATGTGGGTTTGGT 1105
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 949 CTGAGTGACTGGAACGGAAGAGGTTGGGCACTTGCAGCTGGATTGTTTTGTGGGTTTGGT 1008
Query 1106 AACGGTCTTCAGTTCATGGGTGGACAAGCTGCAGGATATGCAGCCTCAGATGCTGTTCAG 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 AACGGTCTTCAGTTCATGGGTGGACAAGCTGCAGGATATGCAGCCTCAGATGCTGTTCAG 1068
Query 1166 GCACTTCCTTTAGTATCGACTTTTTGGGGGATATATCTGTTTGGGGAGTATAGGAGATCA 1225
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1069 GCACTTCCTTTGGTATCGACTTTTTGGGGGATATATCTTTTTGGGGAGTATAGGAGATCA 1128
Query 1226 TCTACGCGAACATATGCTTTGCTTGTTGGAATGCTGGTGATGTTTACTGTTGCTGTGGGG 1285
||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1129 TCTCCGCGAACATATGCTTTGCTTATTGGAATGCTGGTGATGTTCACTGTTGCTGTGGGG 1188
Query 1286 CTTCTAATGGCCTCGGCTGGGGAAAGAGAGACGCGATTTAC 1326
||||||||||||||||||||| |||||||||||||||||||
Sbjct 1189 CTTCTAATGGCCTCGGCTGGGAAAAGAGAGACGCGATTTAC 1229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55078494270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5