BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26450.1
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921611 jgi|Araly1|921611|scaffold_102892.1 852 0.0
> Ahg921611 jgi|Araly1|921611|scaffold_102892.1
Length=644
Score = 852 bits (461), Expect = 0.0
Identities = 588/647 (91%), Gaps = 18/647 (3%)
Strand=Plus/Plus
Query 169 CGATCAAGTTTAAGCAGTCATGGCGGTTTTGCTTCCTCTGTTTCTTCTCTCTTTCATGTT 228
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3 CGATCAAGTTTTAGCAGTCATGGCGGTTTTGCTTCCTCTGTTTCTTCTCTCTTTCATGGT 62
Query 229 TACCTATTCAAACGCGGCGGTTTGTGTGTGCAAGGACGCTAACGAGCTGGATCTTCAGAA 288
|||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 63 TACCTACTCAAACGCGGCGGTTTGTGTGTGCAAGGACGCGAGCGAGCTGGATCTTCAGAA 122
Query 289 GGTGATAGACTTCGCATGTGGAGGAGGTGCTGACTGTGCACAGATTCAGACGACCGGAGC 348
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 123 GGTGATAGACTTCGCATGTGGAGGAGGTGCTGACTGTACTCAGATTCAGACGACCGGAGC 182
Query 349 TTGTTATCAACCAAACACCCTCAAGAACCACTGTGACGTTGCCGTTAACAGCTACTATCA 408
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||
Sbjct 183 TTGTTATCAACCAAACACCGTCAAGAACCACTGTGACGTCGCCGTTAACAGCTACTACCA 242
Query 409 AAAGAAAGCTTCCACCGGTGCCACATGTGACTTCAACGGCGCCGCCGTCATCTCCACTTC 468
||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 243 GAAGAAAGCTTCTACCGGTGCCACCTGTGACTTTAACGGCGCCGCCGTCATCTCCACTTC 302
Query 469 CCCTCCTTCGACTACGTCAAGCTGTTTATCTAGTTCTAGTTCCAACGGAACCCCCACTGC 528
|||||||||||||||||||| ||||||||||||||| || || |||||||||||||||||
Sbjct 303 CCCTCCTTCGACTACGTCAAACTGTTTATCTAGTTCCAGCTCAAACGGAACCCCCACTGC 362
Query 529 CGGATATCCATCCACCGGAAATTCAACCACAGCAAG-TCCAGGCACCACAAATCCATCCA 587
|||||||||||| ||||| ||||||||||| ||| | ||||||||||||||||||| |||
Sbjct 363 CGGATATCCATCAACCGGCAATTCAACCACCGCA-GCTCCAGGCACCACAAATCCAACCA 421
Query 588 CAGGCAATTCAACAAACAGCACACTACCCACTAATGATAAGCCGACTTCATCTACGATAA 647
|||| |||||||||| |||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 422 CAGGAAATTCAACAAGCAGCACACTACCCACTGATGATAAGCCGACATCATCTACGATAG 481
Query 648 CGTTTCCTGACAGTACTACTATGGGACCATCTAGCAGCACGAG---T---GGTG-A--T- 697
| |||||| ||| ||||||||||||| || |||||||| || | |||| | |
Sbjct 482 CATTTCCTAACA---CTACTATGGGACCGTCCAGCAGCACCAGCGGTTTCGGTGTAGGTG 538
Query 698 --CCCAACGGTGGAGAAGAGCTATCCGTCAGAACCACGACGATCATCTTACTGACTACCA 755
|||||||||||||||||||| |||||| ||| ||||| ||| |||| || |||||||
Sbjct 539 ATCCCAACGGTGGAGAAGAGCTCTCCGTCCGAAGCACGATGATTGTCTTGCTAACTACCA 598
Query 756 TCGCTGCCGTGGCATTGAGGGTTTAGGTAAGATCATCTCAAGATGAT 802
|||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 599 TCGCTGCCGTGGCATTGAGGGTTTAGGTGAGATCATCTCA-GATGAT 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5