BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26470.1
Length=655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472771 jgi|Araly1|472771|fgenesh2_kg.1__2725__AT1G26470.1 922 0.0
> Ahg472771 jgi|Araly1|472771|fgenesh2_kg.1__2725__AT1G26470.1
Length=612
Score = 922 bits (499), Expect = 0.0
Identities = 582/620 (94%), Gaps = 13/620 (2%)
Strand=Plus/Plus
Query 30 CAAAACCCTAAAAAATGGGTGGAAGAACGGACGAAAGTGGCGGAGGAGGTAAAGAGAAAG 89
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 CAAAACCCTAAAAAATGGGTGGAAGAACGGACGGAAGTGGCGGAGGAGGTAAAGAGAAAG 60
Query 90 AGGAAGAGCAAGATGGTTTGTCCGTACACTCTCCCTGTAAAGCTTTACCTTCCTCCGCCT 149
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 61 AGGAAGAGCAAGACGGTTTGTCCGTGCACTCTCCCTGTAAAGCTTTACCTTCCTCCGCTT 120
Query 150 CCTCTCTCTCCAAGGAGCAGTCACAGGTTGAATTAGAGCTAAGGTTATTAGAAGCCCTTG 209
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 121 CATCTCTCTCCAAGGAGCAGTCACAGGTTGAATTAGAGCTCAGGTTATTAGAAGCTCTTG 180
Query 210 AAATCTATCCTCCTGTTAAACTCCGAGGGATACATCGCCACTTTGTTCTTTATGGTCTGA 269
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 AAATCTATCCTCCTGTCAAACTCCGAGGGATACATCGCCACTTTGTTCTTTATGGTCTCA 240
Query 270 TGGAGTATCTCGGAAGAAGCTTTGACCGACCGTTCACTGCGGATGAGGTTCTGCAGCTAC 329
||||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||
Sbjct 241 TGGAGTATCTCGGAAGAAGCTTTGACCGACCGTTCTCAGCAGATGAGGTTCTGCAACTAC 300
Query 330 TCGATCGTTTTTACAACATTGAGATGCTGAAATCAGATGATGAGGACATAGACATTCTGA 389
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCGATCGTTTCTACAACATCGAGATGCTGAAATCAGATGATGAGGACATAGACATTCTGA 360
Query 390 ATCACGAGGAAGACTTTACCTTGCCGCAGAGTT-TCTTTGATAAGGAAGAAGAATGACAG 448
||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 361 ATCACGAGGAAGACTTTACCTTGCCGCCGAGTTAT-TTTGATAAGGAAGAAGAATGACAG 419
Query 449 AGGAAGAAGAAAAGATGTTTTCTTT--T-CATTCATCTTCTCCCATCTTTTTGTATATGG 505
|| ||||||||||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 420 AGCAAGAAGAAAAGATCTTTTCTTTGCTTCATTCATCTTCTCCCATCTTTTTGTATATGG 479
Query 506 TTAGGTTTTGTCTTCAGCTCTTATGATAAGCTTTTTTCTATATATTCTGAAGTTTTAATG 565
|||||||| ||||||||||||||||||||| |||||||| ||||||||| ||||||||||
Sbjct 480 TTAGGTTT-GTCTTCAGCTCTTATGATAAGTTTTTTTCTGTATATTCTGCAGTTTTAATG 538
Query 566 TCAATAAAACCATCAGGATCAATGAATAATCTTTTTGTTACTCTGTCCAG-AGAGTTAAT 624
||||||||||||||||||||| || | |||||| |||||||| || | |||||||||
Sbjct 539 TCAATAAAACCATCAGGATCATTGG-T---CTTTTT-TTACTCTG-CCGGGAGAGTTAAT 592
Query 625 AATCATAACAAGCTTTTTGC 644
||||||||||||||| ||||
Sbjct 593 AATCATAACAAGCTTGTTGC 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24017437710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5