BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26480.1
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313341 jgi|Araly1|313341|fgenesh1_pm.C_scaffold_1002121 1358 0.0
Ahg473646 jgi|Araly1|473646|fgenesh2_kg.1__3600__AT1G34760.2 228 8e-59
Ahg893515 jgi|Araly1|893515|Al_scaffold_0006_1511 143 3e-33
> Ahg313341 jgi|Araly1|313341|fgenesh1_pm.C_scaffold_1002121
Length=861
Score = 1358 bits (735), Expect = 0.0
Identities = 779/801 (97%), Gaps = 0/801 (0%)
Strand=Plus/Plus
Query 106 ATGTCATCATCAGGATCCGACAAAGAGAGAGAGACTTTTGTCTATATGGCTAAGCTCTCC 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCATCATCAGGATCCGACAAAGAGAGAGAGACTTTTGTCTATATGGCTAAGCTCTCC 60
Query 166 GAACAAGCCGAGCGATACGACGAGATGGTGGAGACGATGAAGAAAGTGGCGAGGGTTAAT 225
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 61 GAACAAGCCGAACGATACGACGAGATGGTGGAGACGATGAAGAAAGTGGCGAAGGTGAAT 120
Query 226 AGCGAGCTGACTGTGGAAGAGAGGAATCTGTTGTCGGTTGGTTACAAGAACGTGATCGGA 285
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 121 AGCGAGCTGACGGTGGAAGAGAGGAATCTGTTGTCAGTTGGTTACAAGAACGTAATCGGA 180
Query 286 GCAAGAAGAGCTTCGTGGAGGATAATGTCGTCCATCGAGCAGAAAGAAGAGTCTAAAGGC 345
||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 181 GCAAGAAGAGCTTCGTGGAGGATAATGTCATCGATCGAGCAGAAAGAAGAGTCCAAAGGC 240
Query 346 AATGAATCAAACGTGAAACAAATCAAGGGTTATCGCCAAAAGGTAGAAGATGAGCTCGCT 405
||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 241 AATGAATCAAATGTGAAACATATCAAGGGTTATCGCCAAAAGGTTGAAGATGAGCTCGCT 300
Query 406 AACATTTGCCAAGACATTCTCACCATCATTGATCAGCATCTCATCCCTCACGCTACCTCA 465
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACATTTGCCAAGACATTCTCTCCATCATTGATCAGCATCTCATCCCTCACGCTACCTCA 360
Query 466 GGGGAAGCTACCGTCTTCTACTACAAGATGAAAGGAGATTATTACCGTTACTTGGCTGAG 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGGGAAGCTACCGTCTTCTACTACAAGATGAAAGGAGATTATTACCGTTACTTGGCTGAG 420
Query 526 TTTAAGACCGAGCAAGAGAGGAAGGAAGCTGCTGAACAGTCTCTCAAAGGCTATGAGGCT 585
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 421 TTTAAGACCGAGCAAGAGAGGAAGGAAGCTGCTGAACAGTCGCTTAAAGGCTATGAGGCT 480
Query 586 GCAACACAAGCTGCAAGCACTGAGCTTCCTTCGACCCATCCAATTCGTCTTGGCCTTGCT 645
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GCAACACAAGCTGCAAGCACTGAGCTTCCTTCGACCCATCCGATTCGTCTTGGCCTTGCT 540
Query 646 CTTAACTTCTCTGTTTTCTACTATGAGATCATGAACTCTCCTGAAAGAGCTTGCCATTTG 705
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 CTTAACTTCTCTGTTTTCTACTACGAGATCATGAACTCTCCTGAAAGAGCTTGCCATTTG 600
Query 706 GCTAAGCAAGCCTTCGATGAGGCGATTGCAGAGTTAGATACTCTAAGTGAGGAGTCGTAC 765
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 GCGAAGCAAGCCTTCGATGAGGCGATTGCGGAGTTAGATACTCTAAGTGAGGAGTCGTAC 660
Query 766 AAGGACAGCACTTTGATCATGCAGCTCCTGAGAGACAACCTCACCCTCTGGACTTCTGAT 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGGACAGCACTTTGATCATGCAGCTCCTGAGAGACAACCTCACCCTCTGGACTTCTGAT 720
Query 826 CTTCCTGAAGATGGAGGAGAAGACAACATCAAGACTGAAGAATCCAAGCAAGAACAGGCC 885
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 CTTCCTGAAGATGGAGGAGAAGACAACATCAAGACTGAAGAACCCAAGCAAGAACAGGCT 780
Query 886 AAGCCTGCCGATGCCACTGAG 906
|||||||| ||||||||||||
Sbjct 781 AAGCCTGCAGATGCCACTGAG 801
> Ahg473646 jgi|Araly1|473646|fgenesh2_kg.1__3600__AT1G34760.2
Length=991
Score = 228 bits (123), Expect = 8e-59
Identities = 432/578 (75%), Gaps = 34/578 (6%)
Strand=Plus/Plus
Query 130 GAGAGAGAGACTTTTGTCTA-TATGGCTAAGCTCTCCGAACAAGCCGAGCGATACGACGA 188
|||||||||| | || || | |||| || ||| ||| ||||| ||| ||||||| ||
Sbjct 61 GAGAGAGAGAATCAAGTGTACT-TGGCCAAACTCAACGAGCAAGCTGAGAGATACGATGA 119
Query 189 GATGG-TGGAGACGATGAAGAAAGTGGCGAG-GGTTAATAG-CGAGCTGACTGTGGAAGA 245
||||| || || | ||||||||||| || || || || | ||||| || | |||||
Sbjct 120 GATGGTTGAAG-CAATGAAGAAAGTTGC-AGCTCTTGAT-GTGGAGCTCACAATTGAAGA 176
Query 246 GAGGAATCTGTTGTCGGTTGGTTACAAGAACGTGATCGGAGCAAGAAGAGCTTCGTGGAG 305
||||||||| || || ||||||||||| || ||||| || || || ||||| ||||||||
Sbjct 177 GAGGAATCTTTTATCTGTTGGTTACAAAAATGTGATTGGTGCTAGGAGAGCGTCGTGGAG 236
Query 306 GATAATGTCGTCCATCGAGCAGAAAGAAG-AGTCTAAAGGCAATGAATCAAACGTG-AAA 363
||| | || || || ||||||||||||| | || | || || ||| |||| || |||
Sbjct 237 GATCCTTTCTTCGATTGAGCAGAAAGAAGTA-TCGAGGGGAAACGAA-CAAA-ATGCAAA 293
Query 364 CA-AATCAAGGGTTATC--GCCAAAAGGTAGAAGATGAGCTCGCTAACATTTGCCAAGAC 420
| || |||| ||| | | | |||||| ||||| |||||| | || || || | ||
Sbjct 294 GAGGATTAAGGATTA-CAGGAC-AAAGGTTGAAGAAGAGCTCTCCAAGATCTGTTACGAT 351
Query 421 ATTCTCACCATCATTGATCAGCATCTCATCCC-TCACGCTACCTCAGGG-GAAGCTACCG 478
||| | | |||| ||| ||||||| |||| || ||| || || ||| ||| | || |
Sbjct 352 ATTTTGGCTGTCATAGATAAGCATCTTGTCCCATC-CGCAACTTC-GGGAGAATCCACGG 409
Query 479 TCTTCTACTACAAGATGAAAGGAGATTATTACCGTTACTTGGCTGAGTTTAAGACCGA-G 537
|||||||||||||||||||||||||||||| | | ||||||||||| |||||| ||| |
Sbjct 410 TCTTCTACTACAAGATGAAAGGAGATTATTTCAGATACTTGGCTGAATTTAAGTCCGGTG 469
Query 538 CAAGAGAG-GAAGGAAGCTGCTGAACAGTCTCTCAAAGGC-TATGAGGCTGCAAC-ACAA 594
| || | |||| ||||||| || || || ||||| ||| ||||| |||||||| ||
Sbjct 470 CT-GATCGCGAAG-AAGCTGCGGACCAATCACTCAA-GGCGTATGAAGCTGCAACGACTT 526
Query 595 GCTGCAAGCACTGAGCT-TCCTTCGACCCATCCAATTCGTCTTGGCCTTG-CTCTTAACT 652
| || ||| | || | || | | || |||||||| | || ||| ||| |||| ||||
Sbjct 527 -CAGCTAGCTCGGAATTATC-TACAACACATCCAATAAGACTCGGC-TTGGCTCTCAACT 583
Query 653 TCTCTGTTTTCTACTATGAGATCATGAACTCTCCTGAA 690
| ||||| |||||||| |||||| |||| || || |||
Sbjct 584 TTTCTGTATTCTACTACGAGATCTTGAATTCACCAGAA 621
> Ahg893515 jgi|Araly1|893515|Al_scaffold_0006_1511
Length=795
Score = 143 bits (77), Expect = 3e-33
Identities = 449/620 (72%), Gaps = 60/620 (10%)
Strand=Plus/Plus
Query 235 ACTGTGGAAGAGAGGAATCTGTTGTCGGTTG-GTTACAAGAACGTGATCGGAGCAAGAAG 293
||||| |||||||||||||| ||||| |||| | || ||||||||||| || || || ||
Sbjct 115 ACTGTTGAAGAGAGGAATCTCTTGTCTGTTGCG-TATAAGAACGTGATTGGTGCTAGGAG 173
Query 294 AGCTTCGTGGAGGATAATGTCGTCCATCGAGCAGAAAGAAG--AGTCTAAAGG---CAAT 348
||||| |||||||| || || ||||| |||||||| |||| || | | || || |
Sbjct 174 GGCTTCTTGGAGGATTATCTCTTCCATTGAGCAGAAGGAAGATAG-C-AGGGGTAACAGT 231
Query 349 GAATCAAACG-TGAAACAAATCAAGGGTTATC-GCCAAAAGGTAGAAGA-TGAGCTC-GC 404
| ||| ||| | | ||||||| ||| | | ||| | ||| | ||||||| ||
Sbjct 232 G-ATC--ACGTTTCGA-TTATCAAGGATTA-CAGAGGCAAGATTGAA-ACTGAGCTCAGC 285
Query 405 TAACATTTGCCAAGACATTCT-CACCATCATTGA-TCAGCATCTCATCCCTCAC-GCTAC 461
|| |||||| | | |||| | ||| || | || | |||||||| ||| | ||| |
Sbjct 286 -AAGATTTGCGATGGCATTTTGAACCTTC-TCGAGGC-TCATCTCATTCCT-GCTGCTTC 341
Query 462 CTCAGG-GGAAG-CTACCGTCTTCTA-CTACAAGATGAAAGGAGATTATTACCGTTA-CT 517
|| || | || | | || || || || ||||||||| |||||||| | || || ||
Sbjct 342 CT-TGGCTG-AGTCCAAAGTTTTTTACCT-CAAGATGAAGGGAGATTACCATCGGTACCT 398
Query 518 TGGCTGAGTTTAAGAC-CGAGCAAGAGAGGAAGGAAGCTGCTGAACAGT-CTCTCAAAGG 575
| ||||| || ||||| | || |||||||| |||||||||| | ||| |||| ||
Sbjct 399 T-GCTGAATTCAAGACTGGTGC-TGAGAGGAAAGAAGCTGCTG-AGAGTACTCT-TGTGG 454
Query 576 -CTATGAGGCTG--CAACACA-AGCTGCAAGCACTGAGCTT-CCTTCGACCCATCCAATT 630
||| || ||| || | | ||| | | |||| ||| || | || || || | |
Sbjct 455 CCTACAAGTCTGCTCAGGATATTGCT-CTTG--CTGA-CTTGGCTCCCACTCACCCGA-T 509
Query 631 C-GTCTTGGCCTTGCTCTTAACTTCTCTGTTTTCTACTATGAGAT-CATGAACTC-TCCT 687
| | || || ||||||||||||||||||||||||||||||||||| | | ||||| || |
Sbjct 510 CAGACTGGGGCTTGCTCTTAACTTCTCTGTTTTCTACTATGAGATTC-TCAACTCATC-T 567
Query 688 GAAAGAGCTTGCCATT-TGGCTAAGCAAGCCTTCGATGAGGCGAT-TGCAGAGTTAGATA 745
|| | || || | | | || ||||| || || |||||||| || | | ||| ||||||
Sbjct 568 GATCGTGCATGT-AGTCTCGCAAAGCAGGCTTTTGATGAGGCAATCT-CTGAGCTAGATA 625
Query 746 C-TCTAAGTGAGGAGTCGTACAAGGACAGCACTTTGATCATGCAGCTCCTGAGAGACAAC 804
| | | | ||||| || ||||||||||| || |||||||||||||| || | || ||
Sbjct 626 CAT-TGGGAGAGGAATCATACAAGGACAGTACATTGATCATGCAGCTTCTCCGTGATAAT 684
Query 805 CTCACCCTCTGGACTTCTGA 824
||||||||||||||||||||
Sbjct 685 CTCACCCTCTGGACTTCTGA 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43117019127
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5