BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26500.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921606 jgi|Araly1|921606|scaffold_102887.1 2265 0.0
Ahg950288 jgi|Araly1|950288|scaffold_802175.1 52.8 7e-06
> Ahg921606 jgi|Araly1|921606|scaffold_102887.1
Length=1544
Score = 2265 bits (1226), Expect = 0.0
Identities = 1409/1500 (94%), Gaps = 2/1500 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGTGGCCGTCGTGACTTCTCGGAGGATGATTAACATCGGAAACTCAATTCGGCGA 60
|||||| | |||||||| |||| |||||||||||||||||||| ||| ||||| |||||
Sbjct 22 ATGGCTATCGCCGTCGTTTCTTCACGGAGGATGATTAACATCGGGAACCCAATTTGGCGA 81
Query 61 TGCTTCATTCTCAACCACCGCTTCTTCTCCACCGAGCTAACTCCAACCACAATCACACCG 120
| |||||| ||||| ||||||||||| ||||||||| ||||||||||||| |||||||||
Sbjct 82 TTCTTCATGCTCAAACACCGCTTCTTTTCCACCGAGTTAACTCCAACCACCATCACACCG 141
Query 121 ATAAACCAAGACCATCTTCTCCGAGTCTGTACAATTCTCTACCAGCAACAGAACTCACCT 180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 142 ATAAACCAAGACCATCTCCTCCGAGTCTGTACAATTCTCTACCAGCAACAGAACTCGCCT 201
Query 181 GATTCACGTCTCGTCTCTAAACTCTCCTCCACCAAATTTCAACTAACTCACGAGTTCTTC 240
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 202 GATTCCCGTCTCGTCTCTAAACTCTCCTCCACCAAATTTCAACTAACACACGAGTTCTTC 261
Query 241 CTCCAAGTCTGCAACAATTTCCCACTCTCGTGGCGTCCTGTACACCGTTTCTTCCTCTAT 300
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 262 CTCCAAGTCTGCAACAATTTCCCCCTCTCATGGCGTCCGGTACACCGTTTCTTCCTCTAT 321
Query 301 TCTCAAACTCACCACCCTGATTTCACCCACACTTCCACTACCTCTAATAAGATGCTAGCA 360
||||| | |||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 322 TCTCAGATTCACCACCCTGATTTCGTCCACACTTCCACTACCTCTAATAAGATGCTTGCA 381
Query 361 ATCATCGGGAACTCAAGAAACATGGATCTTTTCTGGGAATTAGCTCAAGAGATCGGAAAA 420
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 382 ATCATCGGGAACTCAAGAAACATGGATCTTTTCTGGGAATTGGCTCAAGAGATCGGGAAA 441
Query 421 CGTGGATTGGTTAACGATAAGACATTTCGGATTGTGTTGAAAACACTTGCTTCTGCTAGA 480
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 442 CATGGATTGGTTAACGATAAGACGTTTCGGATTGTGTTGAAAACACTTGCTTCTGCTCGA 501
Query 481 GAGTTGAAGAAATGTGTAAACTATTTCCATTTGATGAACGGTTTTGGGTATTTGTATAAT 540
|| |||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||
Sbjct 502 GAATTGAAGAAATGTGTTAACTTTTTCCATTTGATGAACGATTTTGGGTATTTGTATAAT 561
Query 541 GTGGAAACGATGAATAGAGGAGTGGAGACTCTGTGTAAGGAGAAGCTTGTTGAAGAAGCT 600
||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 562 GTGCAAACGATGAATAGAGGAGCGGAGACTCTGTGTAAGGAGAAGCTTGTGGAAGAAGCT 621
Query 601 AAGTTTGTTTTTATTAAGCTGAAGGAGTTTATTAAACCTGATGAGATTACTTATAGGACG 660
||||||||| || |||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 622 AAGTTTGTTGTTGTTAAGCTGAAAGAGTTTATCAAACCTGATGAGATTACTTATAGGACG 681
Query 661 ATGA-TACAAGGGTTTTGTGATGTTGGTGATTTGATTGAAGCTGCTAAGCTTTGGAATTT 719
|||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 682 ATGATTA-AAGGGTTTTGTGATGTCGGTGATTTGATTGAAGCTGCTAAGCTTTGGAATTT 740
Query 720 GATGATGGATGAAGGATTTGATGTTGATATCGAAGCTGGTAAAAAGATTATGGAAACACT 779
||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| |
Sbjct 741 GATGATGGATGAAGGATTTGAGGTTGATATTGAAGCTGGTCAAAAGATTATGGAAACATT 800
Query 780 TCTGAAGAAGAATCAGTTTGATGAAGCTTCTAAGGTGTTTTATGTTATGGTTTCGAAAAG 839
||| |||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||| ||
Sbjct 801 TCTAAAGAAGAACCAGTTTGATGAAGCTTCGAAGGTCTTTCATGTGATGGTTTCGAAGAG 860
Query 840 AGGTGGTGATTTGGATGGGGGTTTCTACAGGGTGATGATTGATTGGTTGTGTAAAAACGG 899
|||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 861 AGGTTGTGATTTGGATGGGTCTTTCTACAGGGTTATGATTGATTGGTTGTGTAAAAACGG 920
Query 900 TAGGATTGATATGGCACGTAAGGTGTTCGATGAAATGCGTGAGAGAGGTGTTTATGTGGA 959
|||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 921 TAGGATTGATATGGCACGTAAGGTGTTCGATGAAATGCGTGAAAGAGGTGTTCAGGTGGA 980
Query 960 TAACTTAACTTGGGCGTCGTTAATCTATGGACTGTTGGTTAAACGAAGAGTTGTAGAGGC 1019
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 981 TAACTTAACTTGGGCGTCGATAATCTATGGACTGTTGGTTAAACGAAGAGTTGCAGAGGC 1040
Query 1020 TTATGGGTTGGTGGAAGGGGTTGAGAATCCGGATATTAGTATCTATCATGGGTTGATAAA 1079
||| | ||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1041 GTATAAGACAGTGGAAGCGGTTGAGAATCCGGATATTAGTATCTATCATGCATTGATAAA 1100
Query 1080 AGGGTTGGTGAAGATTAAACGGGCAAGCGAAGCAACAGAGGTTTTCAGGAAGATGATACA 1139
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1101 AGGGTTGGTGAAGATTAAACGGGCAAGCGAGGCAACAGAGGTTTTCAGGAAGATGATACA 1160
Query 1140 GAGAGGGTGCGAGCCAATAATGCATACGTATCTTATGTTGTTGCAAGGACATTTGGGGAG 1199
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1161 GAGAGGGTGCGAGCCTATAATGCATACGTATCTTATGTTGCTGCAAGGACATTTGGGTAG 1220
Query 1200 AAGGGGAAGGAAAGGGCCGGACCCGTTAGTGAATTTCGATACGATATTCGTTGGAGGTAT 1259
|| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 GAGAGGAAGGAAAGGACCAGACCCGTTAGTGAATTTCGATACGATATTCGTTGGAGGTAT 1280
Query 1260 GATCAAGGCGGGGAAACGGTTGGAAACTACAAAGTATATTGAGAGAACGTTGAAGAGAGG 1319
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1281 GATCAAGGCAGGGAAACGGTTGGAAACTACAAAGTATGTTGAGAGAACGTTGAAGAGAGG 1340
Query 1320 GCTTGAAGTTCCTAGGTTTGATTATAGCAAGTTCTTGCATTATTATTCTAATGAGGAAGG 1379
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1341 GCTTGAAGTTCCTAGATTTGATTATAGCAAGTTCTTGCATTGTTATTCTAATGAGGAAGG 1400
Query 1380 TGTGGTTATGTTTGAAGAGATGGCTAAGAAACTTAGAGAAGTGAGTTTGTTTGATTTGGC 1439
|||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1401 TGTGTTTATGTTTGAAGAGATGGCCAAGAAACTTAGAGAAGTGAGCTTGTTTGATTTGGC 1460
Query 1440 TGATATATTCCagaggtatggagagaagatgactacaagagagagaaggagagatagaga 1499
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1461 TGATATTTTCCAGAGGTATGGAGAGAAGATGACTACACGAGAGAGAAGGAGAGATAGAGA 1520
> Ahg950288 jgi|Araly1|950288|scaffold_802175.1
Length=1636
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 913 GCACGTAAGGTGTTCGATGAAATGCGTG 940
||||||||||||||||||||||||||||
Sbjct 528 GCACGTAAGGTGTTCGATGAAATGCGTG 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5