BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26510.1
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472768 jgi|Araly1|472768|fgenesh2_kg.1__2722__AT1G26510.1 1327 0.0
> Ahg472768 jgi|Araly1|472768|fgenesh2_kg.1__2722__AT1G26510.1
Length=1998
Score = 1327 bits (718), Expect = 0.0
Identities = 931/1030 (90%), Gaps = 30/1030 (3%)
Strand=Plus/Plus
Query 1 ATGAGGACACGTAGCAAAAAGACCAAAACCGTGAACAACAACAACG-ATCTACAAAAGTC 59
||||||||||| |||||||||| ||||||||||||||||||||| | |||||||||||||
Sbjct 952 ATGAGGACACGCAGCAAAAAGATCAAAACCGTGAACAACAACAA-GAATCTACAAAAGTC 1010
Query 60 GGAAGAGAAACAA-AAGTTTGATCAACTCCCTCTGGACCTAGAGATCGAGATGTTTAGGA 118
|||| || || || |||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1011 GGAAAAG-AAGAACAAGTTTGATCAACTCCCTCTGGACCTAGAGATCGAGATATTTAAGA 1069
Query 119 GGCTGCCTTTAAAATCTGTAGCTAGGTTTCTCACACTATCCAAGTCATGTGCAACAACTA 178
|| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1070 GGTTGCCTTTGAAATCTGTAGCTAGGTTTCTCACACTATCCAAGTTATGTGCAACAACTA 1129
Query 179 TCCGCAGTCCAAGTTTCATCACATCATTCCCGTCGCAGCCTTGTACCCTAATCGCTTCCG 238
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1130 TCCGCAGTCCAAGTTTCATCACATCTTTCCCATCGCAGCCTTGTACCCTAATCGCTTCCG 1189
Query 239 CCGCTACAATCAGGACTTGCCACAACTTGCCTTCCAGCTTTAAATCTAAGGACCAAAGGT 298
|| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CCCCTATAATCAGGACGTGCCACAACTTGCCTTCCAGCTTTAAATCTAAGGACCAAAGGT 1249
Query 299 TGTACTTCTTCTCATCGTCTTCTTCATCATCAACTGTCTTTTCTA-CGCGTTTGACATGT 357
|| | | ||||||| |||||||| |||||||||| ||||||||||||||
Sbjct 1250 TG---------T-A----CTTCTTC-TCATCAAC-GTCTTTTCTATCGCGTTTGACATGT 1293
Query 358 CCGTTGTCCCCATATGATAATCTGATAGAGTACTATTATCATTATGCTAGTGGTTTGATA 417
|||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1294 CCGTCGTCCCCATATCCTAATCTGATAGAGTACTATTATCATTATGCTAATGGTTTGATA 1353
Query 418 AGCATTGGATGTAATCGAAAGCAAATCGTAACTAACCCCAGCACTGGTAGATTCATAACT 477
||| |||||||| |||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1354 AGCGTTGGATGTGGTCGAGAGCAAATCGTAACTAACCCTAGCACTGGTAGATCCATAACT 1413
Query 478 TTACCAAGTGTCAGAAGAAGAAGAGTGG-TCGTGAAAAGTTTTTTCGGGTATGATCCAGT 536
|||||||||||||||| ||| ||| ||| | | |||||||||||||| |||||||||||
Sbjct 1414 TTACCAAGTGTCAGAACAAGGAGAATGGGTA-TAAAAAGTTTTTTCGGATATGATCCAGT 1472
Query 537 TAGTGATCAATACAAAGTCTCGTGCATGACGGAAAGACGTCATGGCCTTCGACAAGACCC 596
|||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct 1473 TAGTGATCAATACAAAGTCTTGTGTATGACGGAAAGACTTCATGGCCTTCGACAAGACCC 1532
Query 597 ATCATCTGAACATCAAGTGTTCACATTGGGAGaaaaaaaGCCATGGAAAATGATAGATTG 656
||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1533 ATCATCTCAACATCAAGTGTTCACACTGGGAGAAAAAAAGCCATGGAAAATGATCGATTC 1592
Query 657 TACTAGCATTCCTGATCACCGTCCTTGGTCTAACGGTGTGTGCATAGATGGTTTTGTGTA 716
||||||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||
Sbjct 1593 TACTAGCATTCCTAATCACCGTCCTTGGTCTAACGGTATTTGCATAGATGGTCTTGTGTA 1652
Query 717 TTACGTTGCTAAAACTGGACAAGGTATGTCACAACTGAGCTTAATGAGATATGCTCTGAG 776
||| ||||||||||| || |||||||| |||||||||||||||||||||| || | ||||
Sbjct 1653 TTATGTTGCTAAAACGGGGCAAGGTATTTCACAACTGAGCTTAATGAGATTTGATTTGAG 1712
Query 777 GGCTGACAATTTGAATCTTTTTACTAGTTTACCTGAAGAGCTTCGAACTCTAA-AACTAT 835
|||||||||| ||||||||||||||||||||||||||||| ||||||||| || || |||
Sbjct 1713 GGCTGACAATATGAATCTTTTTACTAGTTTACCTGAAGAGATTCGAACTCCAACAA-TAT 1771
Query 836 CTGGTGACACTTTATTGAACTAT-GAAGGGAATGTAGC-ATGGCCACTCCAGTTACATC- 892
| ||||||||||||| |||| | || ||||| ||||| || |||| |||| ||||||
Sbjct 1772 ATAGTGACACTTTATTAAACT-TCGAGGGGAAAGTAGCCATAGCCATTCCAACTACATCA 1830
Query 893 T-TATATTTAATGTGTGGGTTATGGATCAGGATGGCGAAAAACATGAATGGTTGAAGAAA 951
| ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1831 TATATATTTGATGTGTGGGTTATGAATCAGGATGGCGCAAAACATGAATGGTTGAAGAAA 1890
Query 952 ATAACTTTCAATATTGAACCTTGGAAGAGTTCATCTCGCTATCTAGACGTTAGAGGCACT 1011
|||||||||| ||||||||| |||||||||| || |||||||||| | ||||||||||||
Sbjct 1891 ATAACTTTCAGTATTGAACCATGGAAGAGTTTATTTCGCTATCTATATGTTAGAGGCACT 1950
Query 1012 ACTCATACGG 1021
||||||||||
Sbjct 1951 ACTCATACGG 1960
Score = 669 bits (362), Expect = 0.0
Identities = 586/687 (85%), Gaps = 43/687 (6%)
Strand=Plus/Plus
Query 1 ATGAGGACACGTAGCAAAAAGACCAAAACCGTGAACAACAACAACGA-TCTACAAAAGTC 59
||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1 ATGAGAACACGTAGCAAAAAGACCAAAACCGTGAACAACAACAA-GAATCTACAAAAGTC 59
Query 60 GGAAGAGAAACAAAA-GTTTGATCAACTCCCTCTGGACCTAGAGATCGAGATGTTTAGGA 118
|||||| ||| || | |||||||||||| |||||||||||| ||||||||| | |||||
Sbjct 60 GGAAGATAAA-AACACGTTTGATCAACTGCCTCTGGACCTATTGATCGAGATATCTAGGA 118
Query 119 GGCTGCCTTTAAAATCTGTAGCTAGGTTTCTCACACTATCCAAGTCATGTGCAACAACTA 178
|| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 119 GGTTGCCTTTGAAATCTGTAGCTAGGTTTCTCACACTATCCAAGTTATGTGCAACAACTA 178
Query 179 TCCGCAGTCCAAGTTTCATCACATCATTCCCGTCGCAGCCTTGTACCCTAATCGCT-TCC 237
||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||
Sbjct 179 TCCGCAGTCCAAGCTTCATCAAATCCTTCCCGTCGCAGCCTTGTACCCTAATCGCTGTC- 237
Query 238 GCCGCTACAATCAGGACTTGCCACAACTTGCCTTCCAGCTTTAAATCTAAGG-AC-C-AA 294
||| || ||||| | || || | | || | | |||||||||| || || | ||
Sbjct 238 GCCCCTGTAATCA--ATTT-CC-CT-C---CCAGGC-GTTTTAAATCTAGGGGACACCAA 288
Query 295 AGGTTGTACTTCTTCTCATCGTCTTCTTCATCATCAACTGTCTTTTCTA-CGCGTTTGAC 353
| ||||||||||||||||| |||||| |||||||||| | ||||||||
Sbjct 289 AATTTGTACTTCTTCTCATC---------ATCATC----GTCTTTTCTATCACGTTTGAC 335
Query 354 ATGTCCGTTGTCCCCATATGATAAT--CTGATAGAGTACTATTATCATTATGCTAGTGGT 411
|||||||| |||| ||| |||| | | |||||||| |||||||||||| || ||||
Sbjct 336 ATGTCCGT---CCCCGTATCCTAATTAC-G-TAGAGTACCATTATCATTATGTTAATGGT 390
Query 412 TTGATAAGCATTGGATGTAATCGAAAGCAAATCGTAACTAACCCCAGCACTGGTAGATTC 471
||||||||| |||||| | |||| |||||||||||||||||||||| ||||||||||||
Sbjct 391 TTGATAAGCGTTGGATATGGTCGAGAGCAAATCGTAACTAACCCCAGTACTGGTAGATTC 450
Query 472 ATAACTTTACCAAGTGTCAGAAGAAGAAGA-GTGGTCGTGAAAAGTTTTTTCGGGTATGA 530
|| |||||||||||||||||| ||| ||| | |||||| ||||||||||||||||||||
Sbjct 451 ATCTCTTTACCAAGTGTCAGAACAAGGAGAAG-GGTCGTAAAAAGTTTTTTCGGGTATGA 509
Query 531 TCCAGTTAGTGATCAATACAAAGTCTCGTGCATGACGGAAAGACGTCATGGCCTTCGAC- 589
||| |||| ||||||||||||||| | || ||||||||| |||| |||||||| | ||
Sbjct 510 TCCTGTTACTGATCAATACAAAGTGTTGTCCATGACGGAGAGACTTCATGGCCATA-ACC 568
Query 590 AAGACCCATCATCTGAACATCAAGTGTTCACATTGGGAGaaaaaaaGCCATGGAAAATGA 649
|||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 569 AAGATCCATCATCTCAACATCAAGTGTTCACACTGGGAGAAAAAAAGCCATGGAGAATGA 628
Query 650 TAGATTGTACTAGCATTCCTGATCACC 676
||||| |||||||||||||||||||||
Sbjct 629 TAGATAGTACTAGCATTCCTGATCACC 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44565689973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5