BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26520.1
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472757 jgi|Araly1|472757|fgenesh2_kg.1__2711__AT1G26520.1 2228 0.0
Ahg472963 jgi|Araly1|472963|fgenesh2_kg.1__2917__AT1G26520.1 972 0.0
> Ahg472757 jgi|Araly1|472757|fgenesh2_kg.1__2711__AT1G26520.1
Length=1459
Score = 2228 bits (1206), Expect = 0.0
Identities = 1323/1378 (96%), Gaps = 13/1378 (1%)
Strand=Plus/Plus
Query 197 TTTGAGTCGTTTGACATTTTAACCAAACCGAACCGAACCGAACCAAGCTAATG-TGAGCT 255
|||||||||||||||||||||||||||||||||||||||||||| |||||| | || |||
Sbjct 83 TTTGAGTCGTTTGACATTTTAACCAAACCGAACCGAACCGAACCGAGCTAA-GTTGGGCT 141
Query 256 CGGCCCATATATGGAGCTCTGTCTTTTACGGCG----TCTCTGCATATA-C--CGGCGAT 308
|||| |||||| |||||| ||||| |||||||| |||||||||| | | |||||||
Sbjct 142 CGGCACATATACGGAGCTTTGTCTCTTACGGCGTCTCTCTCTGCATAAACCGGCGGCGAT 201
Query 309 GCTGAAGGAAGAAGCTGAGGGAGTGAAAATGGAAGATGATGATGAAGAACCACCGATGGC 368
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 GCTGAAGGAAGAAGCTGAGGGAGTGAAAATGGAAGATGATGATGAAGAACCACCGATGGG 261
Query 369 TGTTCAAATCCATCCGGATGTTTCTGTCGGAAAGGTTCACTCATCAAGCGATACTGTTTC 428
| |||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||
Sbjct 262 TATTCAAATCCAACCGGATGTTTCTGTCGGAAAGATTCTCTCATCAAGCGACACTGTTTC 321
Query 429 AGTTGGTGTGTCTGTTATCACTGGCTATCTCGGCGCGGGAAAATCCACTCTTGTGAATTA 488
||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 322 AGTTGGTGTCTCTGTTATCACTGGCTATCTGGGCGCGGGAAAATCCACCCTTGTGAATTA 381
Query 489 TATATTGAACGGGAAACACGGGAAGAGAATAGCTGTGATTTTGAATGAGTTTGGGGAAGA 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 TATATTGAACGGGAAACACGGGAAGAGAATAGCTGTGATTTTGAATGAGTTTGGGGAAGA 441
Query 549 GATTGGAGTTGAGAGGGCTATGATTAACGAAGGAGAAGAAGGTGCCATTGTTGAAGAATG 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 GATTGGAGTTGAGAGGGCTATGATTAACGAAGGAGAAGAAGGTGCCATTGTTGAAGAATG 501
Query 609 GGTTGAGCTCGCTAATGGCTGTGTTTGTTGTACTGTCAAGCATAGTCTTGTTCAAGCTCT 668
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 502 GGTCGAGCTCGCTAATGGCTGTGTTTGTTGTACTGTTAAGCATAGTCTTGTTCAAGCCCT 561
Query 669 CGAGCAGCTTGTTCAGAGAAAAGACAGGCTTGATCATATATTATTGGAGACAACAGGTTT 728
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 562 CGAGCAGCTTGTTCAGAGAAAAGACAGGCTTGATCATATATTACTGGAGACAACAGGTTT 621
Query 729 AGCAAACCCAGCTCCATTGGCTTCTATTCTTTGGTTGGATGACCAGTTAGAATCAGAAGT 788
||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 AGCGAATCCAGCTCCACTGGCTTCTATTCTTTGGTTGGATGACCAGTTAGAATCAGAAGT 681
Query 789 CAAGCTTGACTGTATTGTTACTGTCGTGGATGCAAAGAATCTTCGTTTTCAGCTCAATGA 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 CAAGCTTGACTGTATTGTTACTGTCGTGGATGCAAAGAATCTTCGTTTTCAGCTCAATGA 741
Query 849 GCGTCGTGACTCATCCTCGTTTCCTGAGGCCTTTAATCAAATAGCATTTGCGGACACGAT 908
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 GCGCCGTGACTCATCCTCGTTTCCTGAGGCCTTTAATCAAATAGCATTTGCGGACACGAT 801
Query 909 AATAATGAACAAGGTGGACTTGATTTCTCAAGAGGAGTCTGATGAATTAGAGAAGGAGAT 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 AATAATGAACAAGGTGGACTTGATTTCTCAAGAGGAGTCTGATGAATTAGAGAAGGAGAT 861
Query 969 TCATTCCATCAACTCGCTCGCCAATGTCATCCGATCTGTTAGGTGCCAAGTTGATTTGTC 1028
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 862 TCATTCCATCAACTCGCTCGCTAATGTCATCCGATCTGTTAGGTGCCAAGTTGATTTGTC 921
Query 1029 CAATATATTAAACTGCCAGGCATATGATTCAACTCATGTTAGTCGTCTGGAATCCCTGCT 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 CAATATATTAAACTGCCAGGCATATGATTCAACTCATGTTAGTCGTCTGGAATCCCTGCT 981
Query 1089 GGAAGCAAATAAATCATTAACGACGACAGATCTTCACGATAGTGGAGTAAGGACTCTATG 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 GGAAGCAAATAAATCATTAACGACGACAGATCTTCACGATAGTGGAGTAAGGACTCTATG 1041
Query 1149 CATCAGCGAACCGCAACCTATAAACCTCGATAAGGTTCGTTTATGGCTGGAGGAAATTCT 1208
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1042 CATCAGCGAACCCCAACCTATAAACCTCGATAAGGTTCGTTTATGGCTTGAGGAAATTCT 1101
Query 1209 GTGGGATAAAAAATCGGAGATGGATGTATACCGTTGCAAGGCTGTGTTGAGCATTCAAAA 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 GTGGGATAAAAAATCGGAGATGGATGTATACCGTTGCAAGGCTGTGTTGAGCATTCAAAA 1161
Query 1269 CTCAGACCAGATGCATATTTTGCAGGCCGTTAGAGATATATATGAGATAGTGCCAGCTCG 1328
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1162 CTCAGACCAGATGCATATTTTGCAGGCTGTTAGAGAGATATATGAGATAGTGCCAGCACG 1221
Query 1329 AAAATGGAGCGAGGAAGAGAATCGAACAAACAAAATAGTATTTATAGGACACAAACTGGA 1388
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1222 AAAATGGAGCGAGGAAGAGAATCGAACGAACAAAATAGTATTTATAGGACACAAACTGGA 1281
Query 1389 TGAAGAAGTTCTCAGAAGCGGATTAAGAGATTGCAGACCCTAGATGAAAAAGCAAACTTG 1448
|||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1282 TGAAGAAGTTCTTAGAAGCGGATTAAGAGATTGCAGACCCTAAACGAAAAAGCAAACTTG 1341
Query 1449 CAGTGACAACTAGATTGGTCt-tttt--ttttttCCC-CCCAAGTTTTACCGTCATGAAC 1504
|| |||||||||||||||||| |||| |||||| ||||||||||||||||||||||
Sbjct 1342 CACTGACAACTAGATTGGTCTATTTTGGTTTTTTTTTTCCCAAGTTTTACCGTCATGAAC 1401
Query 1505 AATACTCTGATCAATTTTTGTATAATATATAACAAGTGTGTAAGGTTATATAGGTGTT 1562
|||||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 1402 AATACTCTTATCAATTTTTGTATAATATATAACAACTATGTAAGGTTATTTAGGTGTT 1459
> Ahg472963 jgi|Araly1|472963|fgenesh2_kg.1__2917__AT1G26520.1
Length=1475
Score = 972 bits (526), Expect = 0.0
Identities = 699/776 (90%), Gaps = 38/776 (5%)
Strand=Plus/Plus
Query 853 CGTGACTCATCCTCGTTTCCTGAGGCCTTTAATCAAATAGCATTTGCGGACACGATAATA 912
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 736 CGTGACTCATCCTCGTTTCCCAAGGCTTTTAATCAAATAGCATTTGCGGACACGATAATA 795
Query 913 ATGAACAAGGTGGACTTGATTTCTCAAGAGGAGTCTGATGAATTAGAGAAGGAGATTCAT 972
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 796 ATGAACAAGGTGGACTTGATTTCTCAAAAGGAATCTGATGAATTAGAGAAGGAGATTCAT 855
Query 973 TCCATCAACTCGCTCGCCAATGTCATCCGATCTGTTAGGTGCCAAGTTGATTTGTCCAAT 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 TCCATCAACTCGCTCGCCAATGTCATCCGATCTGTTAGGTGCCAAGTTGATTTGTCCAAT 915
Query 1033 ATATTAAACTGCCAGGCATATGATTCAACTCATGTTAGTCGTCTGGAATCCCTGCTGGAA 1092
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 ATATTGAACTGCCAGGCATATGATTCAACTCATGTTAGTCGTCTGGAATCCCTGCTGGAA 975
Query 1093 GCAAATAAATCATTAACGACGACAGATCTTCACGATAGTGGAGTAAGGACTCTATGCATC 1152
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 976 GCAAATAAATCATTAACGACGACAGATCTTCACGACAGTGGAGTAAGGACACTATGCATC 1035
Query 1153 AGCGAACCGCAACCTATAAACCTCGATAAGGTTCGTTTATGGCTGGAGGAAATTCTGTGG 1212
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1036 AGCGAACCGCAACCTATAAACCTCGATAAGGTTCGTTTATGGTTGGAGGAAATTCTGTGG 1095
Query 1213 GATAAAAAATCGGAGATGGATGTATACCGTTGCAAGGCTGTGTTGAGCATTCAAAACTCA 1272
|||||||||||||||||| | | | |||||| |||||||||||||||||||||
Sbjct 1096 GATAAAAAATCGGAGATG--T-T-----G---CAAGGCGGTGTTGAGCATTCAAAACTCA 1144
Query 1273 GACCAGATGCATATTTTGCAGGCCGTTAGAGATATATATGAGATAGTGCCAGCTCGAAAA 1332
|||||| |||| || | | |||||||||| |||||||||||||| ||||||
Sbjct 1145 GACCAGCTGCACAT---G-A-------AGAGATATAT--GAGATAGTGCCAGCGCGAAAA 1191
Query 1333 TGGAGCGAGGAAGAGAATCGAA-CAAACAAAATAGTATTTATAGGACACAAACTGGATGA 1391
|||||||||||||||||||||| | |||||||||| | | ||| || ||||||||
Sbjct 1192 TGGAGCGAGGAAGAGAATCGAATCCAACAAAATAG-A------G-ACA-AA-CTGGATGA 1241
Query 1392 AGAAGTTCTCAGAAGCGGATTAAGAGATTGCAGACCCTAGATGAAAAA-GCAAACTTGCA 1450
||||||||| ||||||||||||||||||||||||||||| | | |||| |||||||||||
Sbjct 1242 AGAAGTTCTTAGAAGCGGATTAAGAGATTGCAGACCCTAAAAGGAAAACGCAAACTTGCA 1301
Query 1451 GTGACAACTAGATTGGTCtttttttttttCCCCCCAAGTTTTACCGTCATGAACAATACT 1510
|| ||||| |||||||||| | | ||||| |||| ||||||||||| | ||||||
Sbjct 1302 GTAACAACCAGATTGGTCTATCCTGGTTTCCGTTTAAGTCTTACCGTCATGCAGAATACT 1361
Query 1511 CTGATCAATTTTTGTATAATATATAACAAGTGTGTAAGGTTATATAGGTGTTTCAGTTAA 1570
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||
Sbjct 1362 TTGATCAATTTTTGTATAATATATAACAACTGTGTAAGGTTAT-TAGGTGTTTCAATTAA 1420
Query 1571 CGTCTTTACACTCCTGGTTTAATTCTGTAAGCAAATCCAAAGCAAGAAGATTGATG 1626
||||||||||||||||||||| |||||||||||||||||| ||||||||| |||
Sbjct 1421 CGTCTTTACACTCCTGGTTTACC-CTGTAAGCAAATCCAAAGGAAGAAGATTTATG 1475
Score = 819 bits (443), Expect = 0.0
Identities = 648/741 (87%), Gaps = 37/741 (5%)
Strand=Plus/Plus
Query 88 TGCTCTCTTTCAAAACAAAAGACAACGAGAGAACTTTAGTTCTTGCTCTTCTCTCAGATG 147
||||| ||||| ||||| |||||||| || |||||||||| | ||||| ||||||||
Sbjct 24 TGCTCCCTTTCGAAACAGAAGACAAC--GACCACTTTAGTTC-T--TCTTCCCTCAGATG 78
Query 148 CAAGAATCGAGCAGAG-GA--GACTAAGA-ATTTGTTTGTTAAAAATTAGGGTTTTGAGT 203
|||||||||||||||| || || |||| ||||||||||| |||||||||| |||||||
Sbjct 79 CAAGAATCGAGCAGAGAGATTGAGAAAGATATTTGTTTGTT-AAAATTAGGGGTTTGAGT 137
Query 204 CGTTTGACATTTTAACCAAACCGAACCGAACCGAACCAAGCTAATGTGAGCTCGGCCCAT 263
|||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||
Sbjct 138 CGTTTGACATTTTAACCAAACCAAACCGAACCGAACCAAGCTGATGTGGGCTCGGCCCAT 197
Query 264 ATATGGAGCTCTGTCTTTTACGGCGTCTCTGCATATACCGGCGATGCTGAAGGAAGAAGC 323
||| |||||||||||| |||||||||||||||||| ||||||||||||||| | |||||
Sbjct 198 ATACGGAGCTCTGTCTCTTACGGCGTCTCTGCATAAACCGGCGATGCTGAA-G--GAAGC 254
Query 324 TGAGGGAGTGAAAATGGAAGATGATGATGAAGAACCACCGATGGCTGTTCAAATCCATCC 383
|||| |||| ||||||| || ||||||||| |||||| ||||||| ||||||| || ||
Sbjct 255 TGAGCGAGTAAAAATGG-AG--GATGATGAAAAACCACAGATGGCTATTCAAATTCAACC 311
Query 384 GGATGTTTCTGTCGGAAAGGTTCACTCATCAAGCGATACTGTTTCAGTTGGTGTGTCTGT 443
||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||
Sbjct 312 GGATGTTTCTGTCGGAAAGATTCTCTCATCAAGCGACACTGTTTCAGTTGGTGTCTCTGT 371
Query 444 TATCACTGGCTATCTCGGCGCGGGAAAATCCACTCTTGTGAATTATATATTGAACGGGAA 503
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 372 TATCACTGGCTATCTCGGCGCGGGAAAATCCCCCCTTGTGAATTATATATTGAACGGGAA 431
Query 504 ACACGGGAAGAGAATAGCTGTGATTTTGAATGAGTTTGGGGAAGAGATTGGAGTTGAGAG 563
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 432 ACACGGGAAGAGAATAGCTGTGATTTTGAATGAGTATGGGGAAGAGATTGGAGTTGAGAG 491
Query 564 GGCTATGATTAACGAAGGAGAAGAAGGTGCCATTGTTGAAGAATGGGTTGAGCTCGCTAA 623
||||||||||||| |||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 492 GGCTATGATTAACCAAGGAGAAGAAGGTGCCATTTTTGAAGAATGGGTTGAGCTTGCGAA 551
Query 624 TGGCTGTGTTTGTTGTACT---GT-CAAGCATAGTCTTGTTCA-AGCTCTCGAGCAGCTT 678
||||||| || | || ||| || || | ||| | || | || || || ||
Sbjct 552 TGGCTGT-TT-GCTGCACTCTTGTTCA-G-ATAAAA--GA-CAGA-CTATCC-GCTT-TT 601
Query 679 G-TT-CAGAGAAAAGACAGGCTTGATCATATATTATTGGAGACAACAGGTTTAGCAAACC 736
| || | | || | |||||||||||||||||| | ||||||||||||||||||| |
Sbjct 602 GCTTTCTCA-AAT-G-CAGGCTTGATCATATATTGCTAAAGACAACAGGTTTAGCAAATC 658
Query 737 CAGCTCCATTGGCTTCTATTCTTTGGTTGGATGACCAGTTAGAATCAGAAGTCAAGCTTG 796
| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 659 CGGCTCCATTGGCTTCTATTCTTTGGTTGGATGAGCAGTTAGAATCATAAGTCAAGCTTG 718
Query 797 ACTGTATTGTTACT-GTCGTG 816
|||| ||||||||| | ||||
Sbjct 719 ACTGCATTGTTACTCGCCGTG 739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61211023715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5