BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26530.1
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912397 jgi|Araly1|912397|Al_scaffold_0001_2651 501 5e-141
Ahg472963 jgi|Araly1|472963|fgenesh2_kg.1__2917__AT1G26520.1 475 3e-133
Ahg322277 jgi|Araly1|322277|fgenesh1_pm.C_scaffold_4002334 401 5e-111
Ahg472757 jgi|Araly1|472757|fgenesh2_kg.1__2711__AT1G26520.1 390 1e-107
Ahg912586 jgi|Araly1|912586|Al_scaffold_0001_2840 276 3e-73
> Ahg912397 jgi|Araly1|912397|Al_scaffold_0001_2651
Length=591
Score = 501 bits (271), Expect = 5e-141
Identities = 294/304 (97%), Gaps = 6/304 (2%)
Strand=Plus/Plus
Query 531 ATGGGAAGGA-CAAAGAAACCTCAAAAGTTTGCAGTAATGAAGATGA-TGATAAGCCACA 588
||||||| || |||||||||||||||||||||| |||||||| | | ||||||||||||
Sbjct 1 ATGGGAA-GATCAAAGAAACCTCAAAAGTTTGCTGTAATGAA-AAAATTGATAAGCCACA 58
Query 589 AAGCTTTGAAACATTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAAC 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 AAGCTTTGAAACATTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAAC 118
Query 649 TTCCGAGAAACGTTCCAAGTGTTCCTTCAGGGCTTTTCTTTTCTCACAACTCTAGTTTGG 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTCCGAGAAACGTTCCAAGTGTTCCTTCAGGGCTTTTCTTTTCTCACAACTCTAGTTTGG 178
Query 709 TTCCTCCTTACCGGGTTTTGGTGGATACCAATTTCATCAACTTCTCTATCCAGAATAAGA 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTCCTCCTTACCGGGTTTTGGTGGATACCAATTTCATCAACTTCTCTATCCAGAATAAGA 238
Query 769 TTGATCTTGAGAAGGGAATGATGG--TGTTTGTACGCAAAATGCACTCCTTGTATTACGG 826
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 239 TTGATCTTGAGAAGGGAATGATGGACTGTTTGTACGCAAAATGCACTCCTTGTATCACGG 298
Query 827 ACTG 830
||||
Sbjct 299 ACTG 302
Score = 396 bits (214), Expect = 2e-109
Identities = 230/238 (97%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 830 GATTGCAAAAGATCCACGATTTGAAAGACTACCTTGTGTACTCAAAGGGACATATGCTGA 889
||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 354 GATTGCAAAGGATCCCCGATTTGAAAGACTACCTTGTGTACACAAAGGGACATATGCTGA 413
Query 890 TGACTGTCTTGTGGACAGAGTTACTCAGCATAAATGCTTCATAGTAGCTACTTGTGATAG 949
||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 414 TGACTGTCTCGTTGACAGAGTTACTCAGCATAAGTGCTTCATAGTAGCTACTTGTGATAG 473
Query 950 AGATCTAAAGCGAAGGATTCGCAAGATTCCTGGTGTACCAATCATGTATGTGACACAACG 1009
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 474 AGATCTAAAGCGAAGGATTCGCAAGATTCCTGGTGTACCAATCATGTATGTGACACGACG 533
Query 1010 CAAGTACTCAATAGAGAAACTGCCTGAAGCAACAATCGGTGGAGCTCCAAGATACTGA 1067
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 534 CAAGTACTCAATAGAGAAGCTGCCTGAAGCAACAATCGGTGGAGCTCCAAGATACTGA 591
> Ahg472963 jgi|Araly1|472963|fgenesh2_kg.1__2917__AT1G26520.1
Length=1475
Score = 475 bits (257), Expect = 3e-133
Identities = 349/391 (89%), Gaps = 16/391 (4%)
Strand=Plus/Minus
Query 68 GGATTTTCCCGCGCCGAGATAGCCAGTGATAACAGACACACCAACTGAAACAGTATCGCT 127
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 402 GGATTTTCCCGCGCCGAGATAGCCAGTGATAACAGAGACACCAACTGAAACAGTGTCGCT 343
Query 128 TGATGAGTGAACCTTTCCGACAGAAACATCCGGATGGATTTGAACAGCCATCGGTGGTTC 187
||||||| ||| ||||||||||||||||||||| || ||||||| ||||||| ||||||
Sbjct 342 TGATGAGAGAATCTTTCCGACAGAAACATCCGGTTGAATTTGAATAGCCATCTGTGGTTT 283
Query 188 TTCATCATCATCTTCCATTTTCACTCCCTCAGCTTCTTCCTTCAGCATCGCCGGTATATG 247
||||||||| || ||||||| |||| ||||||||| | ||||||||||||||| ||||
Sbjct 282 TTCATCATC--CT-CCATTTTTACTCGCTCAGCTTC--C-TTCAGCATCGCCGGTTTATG 229
Query 248 CAGAGACGCCGTAAAAGACAGAGCTCCATATATGGGCCGAGCTCACATTAGCTTGGTTCG 307
|||||||||||||| |||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 228 CAGAGACGCCGTAAGAGACAGAGCTCCGTATATGGGCCGAGCCCACATCAGCTTGGTTCG 169
Query 308 GTTCGGTTCGGTTTGGTTAAAATGTCAAACGACTCAAAACCCTAATTTTTAACAAACAAA 367
|||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 168 GTTCGGTTTGGTTTGGTTAAAATGTCAAACGACTCAAACCCCTAATTTT-AACAAACAAA 110
Query 368 T-TCTTAGTC--TC-CTCTGCTCGATTCTTGCATCTGAGAGAAGAGCAAGAACTAAAGTT 423
| |||| || || |||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 109 TATCTTTCTCAATCTCTCTGCTCGATTCTTGCATCTGAGGGAAGA--A-GAACTAAAGTG 53
Query 424 CTCTCGTTGTCTTTTGTTTTGAAAGAGAGCA 454
|| |||||||| ||||| ||||| |||||
Sbjct 52 GTC--GTTGTCTTCTGTTTCGAAAGGGAGCA 24
> Ahg322277 jgi|Araly1|322277|fgenesh1_pm.C_scaffold_4002334
Length=537
Score = 401 bits (217), Expect = 5e-111
Identities = 275/303 (91%), Gaps = 4/303 (1%)
Strand=Plus/Plus
Query 531 ATGGGAAGGACAAAGAAACCTCAAAAGTTTGCAGTAATGAAGATGATGATAAGCCACAAA 590
||||||||| |||||||| ||||||||||||| || || |||| ||| || |||||||||
Sbjct 1 ATGGGAAGGGCAAAGAAAGCTCAAAAGTTTGCTGTCATCAAGAAGATTATTAGCCACAAA 60
Query 591 GCTTTGAAACATTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAACTT 650
|||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 61 GCTTTGAAGCATTACAAGGAGGAGGTTTTGAATCCAAACAAGAAGGACCTCACGGAACTT 120
Query 651 CCGAGAAACGTTCCAAGTGTTCCTTCAGGGCTTTTCTTTTCTCACAACTCTAGTTTGGTT 710
|||||||||||||| ||||||||| ||||||||||||||||| ||||||| | ||||||
Sbjct 121 CCGAGAAACGTTCCGAGTGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCGACATTGGTT 180
Query 711 CCTCCTTACCGGGTTTTGGTGGATACCAATTTCATCAACTTCTCTATCCAGAATAAGATT 770
||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 181 CCTCCTTACCGTGTTTTGGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAGATC 240
Query 771 GATCTTGAGAAGGGAATGATG-G--TGTTTGTACGCAAAATGCACTCCTTGTATTACGGA 827
||||||||||||||||||| | | ||| |||||||||| |||||||||||||| |||||
Sbjct 241 GATCTTGAGAAGGGAATGA-GAGACTGTCTGTACGCAAATTGCACTCCTTGTATCACGGA 299
Query 828 CTG 830
|||
Sbjct 300 CTG 302
> Ahg472757 jgi|Araly1|472757|fgenesh2_kg.1__2711__AT1G26520.1
Length=1459
Score = 390 bits (211), Expect = 1e-107
Identities = 264/288 (92%), Gaps = 9/288 (3%)
Strand=Plus/Minus
Query 66 GTGGATTTTCCCGCGCCGAGATAGCCAGTGATAACAGACACACCAACTGAAACAGTATCG 125
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 369 GTGGATTTTCCCGCGCCCAGATAGCCAGTGATAACAGAGACACCAACTGAAACAGTGTCG 310
Query 126 CTTGATGAGTGAACCTTTCCGACAGAAACATCCGGATGGATTTGAACAGCCATCGGTGGT 185
||||||||| ||| ||||||||||||||||||||| |||||||||| | |||||||||||
Sbjct 309 CTTGATGAGAGAATCTTTCCGACAGAAACATCCGGTTGGATTTGAATACCCATCGGTGGT 250
Query 186 TCTTCATCATCATCTTCCATTTTCACTCCCTCAGCTTCTTCCTTCAGCATCGCCG--G-T 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 249 TCTTCATCATCATCTTCCATTTTCACTCCCTCAGCTTCTTCCTTCAGCATCGCCGCCGGT 190
Query 243 ATATGCAGAGA----CGCCGTAAAAGACAGAGCTCCATATATGGGCCGAGCTCA-CATTA 297
|||||||||| |||||||| ||||| |||||| |||||| ||||||| || | |||
Sbjct 189 TTATGCAGAGAGAGACGCCGTAAGAGACAAAGCTCCGTATATGTGCCGAGCCCAAC-TTA 131
Query 298 GCTTGGTTCGGTTCGGTTCGGTTTGGTTAAAATGTCAAACGACTCAAA 345
||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 GCTCGGTTCGGTTCGGTTCGGTTTGGTTAAAATGTCAAACGACTCAAA 83
> Ahg912586 jgi|Araly1|912586|Al_scaffold_0001_2840
Length=753
Score = 276 bits (149), Expect = 3e-73
Identities = 177/190 (93%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 531 ATGGGAAGGA-CAAAGAAACCTCAAAAGTTTGCAGTAATGAAGATGA-TGATAAGCCACA 588
||||||| || |||||||||||||||||||||| |||||||| | | | ||||||||||
Sbjct 1 ATGGGAA-GATCAAAGAAACCTCAAAAGTTTGCTGTAATGAA-AAAATTAATAAGCCACA 58
Query 589 AAGCTTTGAAACATTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAAC 648
|||| |||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 59 AAGCGTTGAAAGATTACAAGGAGGAGGCTCTGAATCCAAACAAGAAGGATCTCACTGAAC 118
Query 649 TTCCGAGAAACGTTCCAAGTGTTCCTTCAGGGCTTTTCTTTTCTCACAACTCTAGTTTGG 708
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTCCAAGAAACGTTCCAAGTGTTCCTTCAGGGCTTTTCTTTTCTCACAACTCTAGTTTGG 178
Query 709 TTCCTCCTTA 718
||||||||||
Sbjct 179 TTCCTCCTTA 188
Score = 237 bits (128), Expect = 2e-61
Identities = 139/144 (97%), Gaps = 1/144 (1%)
Strand=Plus/Plus
Query 910 TTACTCAGCATAAATGCTTCATAGTAGCTACTTGTGATAGAGATCTAAAGCGAAGGATTC 969
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 TTA-TCAGCATAAATGCTTCATAGTAGCTACTTGTGATAGAGATCTAAAGCGAAGGATTC 547
Query 970 GCAAGATTCCTGGTGTACCAATCATGTATGTGACACAACGCAAGTACTCAATAGAGAAAC 1029
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
Sbjct 548 GCAAGATTCCTGGTGTACCAATCATGTATGCAACACGACGCAAGTACTCAATAGAGAAGC 607
Query 1030 TGCCTGAAGCAACAATCGGTGGAG 1053
||||||||||||||||||||||||
Sbjct 608 TGCCTGAAGCAACAATCGGTGGAG 631
Score = 141 bits (76), Expect = 1e-32
Identities = 93/101 (92%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 830 GATTGCAAAAGATCCACGATTTGAAAGACTACCTTGTGTACTCAAAGGGACATATGCTGA 889
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 294 GATTGCAAAGGATCCACGATTTGAAAGACTACCTTGTGTACACAAAGGGACATATGCTGA 353
Query 890 TGACTGTCTTGTGGACAGAGTTACTCAGCATAAATGCTTCA 930
||| ||||| || ||||||||||||||| |||| ||| |||
Sbjct 354 TGATTGTCTCGTTGACAGAGTTACTCAG-ATAA-TGCCTCA 392
Score = 104 bits (56), Expect = 2e-21
Identities = 63/66 (95%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 767 GATTGATCTTGAGAAGGGAATGATGG--TGTTTGTACGCAAAATGCACTCCTTGTATTAC 824
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 195 GATTGATCTTGAGAAGGGAATGATGGACTGTTTGTACGCAAAATGCACTCCTTGTATCAC 254
Query 825 GGACTG 830
||||||
Sbjct 255 GGACTG 260
Score = 104 bits (56), Expect = 2e-21
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 1052 AGCTCCAAGATACTGATAAAGG-ATCCGACACCCATGTTGATTCCAAGAAGTTTGGGAAG 1110
|||||||| ||||||||| ||| | | || ||| |||||||||||||||| |||||||||
Sbjct 674 AGCTCCAATATACTGATATAGGAAACGGA-ACCTATGTTGATTCCAAGAATTTTGGGAAG 732
Query 1111 CCTAAGTTAGTGTTGGTTTAA 1131
|||||||||||||||||||||
Sbjct 733 CCTAAGTTAGTGTTGGTTTAA 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47043679578
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5