BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26540.1
Length=2421
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472755 jgi|Araly1|472755|fgenesh2_kg.1__2709__AT1G26540.1 3328 0.0
> Ahg472755 jgi|Araly1|472755|fgenesh2_kg.1__2709__AT1G26540.1
Length=2303
Score = 3328 bits (1802), Expect = 0.0
Identities = 2148/2315 (93%), Gaps = 23/2315 (1%)
Strand=Plus/Plus
Query 25 CAGAGTGAAATTTTAGGGTTTTACAAAAGGGAGGTTTTTTGCTTCACTCTTTGCTTATTT 84
||||||||||||||||||||||||||||| | || |||||||||| ||||||||||||||
Sbjct 1 CAGAGTGAAATTTTAGGGTTTTACAAAAGAGCGGGTTTTTGCTTCCCTCTTTGCTTATTT 60
Query 85 GGGTTCTGGGTTTTGATTATTTCTACAAAGTAACCACATTTTTCACTTTCCGGAGATGGA 144
||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 61 GGGATCTGGGTTTTGATTATTTCCGCAAAGTAACCACATTTTTCA-ATTCCGGAGATGGA 119
Query 145 GCTGCAAACGATGAAGATAACGAAAGATTGTGTAGTTGAAGTCAGTTCTGAAGAGGAAGG 204
|| || |||||||| ||| | ||||||||||| ||||||||||||||||||||| |||||
Sbjct 120 GCAGCGAACGATGATGATGATGAAAGATTGTGAAGTTGAAGTCAGTTCTGAAGAAGAAGG 179
Query 205 GTTCGAAGGAGCTTGGTTCAGAGCTGTTTTAGAGGAAAACCCAGGGAACTCATCTCGCAG 264
|||||||| ||||||||||||||| | |||||||||| ||||||||||||| |||||||
Sbjct 180 ATTCGAAGGTGCTTGGTTCAGAGCTATGTTAGAGGAAACCCCAGGGAACTCAGCTCGCAG 239
Query 265 AAAGCTTCGTGTTCGTTACTCGACGTTGCTGGACATGGACGGTTCGTCTCCCT-TAATCG 323
|||||||||||||||||||| ||||||||| |||||| ||||||||||| ||| ||||||
Sbjct 240 AAAGCTTCGTGTTCGTTACTTGACGTTGCTCGACATGAACGGTTCGTCT-CCTCTAATCG 298
Query 324 AACACATCGAACAGAGATTCATTAGACCTGTACCTCCGGAGGAGAATCAACAAAAAGACG 383
||||||||||||||||||| ||| ||||||| ||||||| ||||||||||||||||| ||
Sbjct 299 AACACATCGAACAGAGATTTATTCGACCTGTCCCTCCGGTGGAGAATCAACAAAAAGGCG 358
Query 384 TCGTTTTGGAGGAAGGTTTGCTGGTGGATGCTGACCACAAAGACGGGTGGTGGACTGGTG 443
||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||
Sbjct 359 CCGTTTTGGAGGAAGGTTCGCTGGTGGATGCTGACCACAAAGATGGATGGTGGACTGGTG 418
Query 444 TTGTCGTAAAGAAAATGGAGGACGACAACTATTTGGTTTATTTTGATTTGCCTCCTGACA 503
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 419 TTGTCGTAAAGAAAGTGGAGGACGACAACTATTTGGTTTATTTTGATTTACCTCCTGACA 478
Query 504 TTATACAGTTCGAGAGAAAGCAGTTGCGGACTCATCTTATCTGGACCGGTGGGACTTGGA 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTATACAGTTCGAGAGAAAGCAGTTGCGGACTCATCTTATCTGGACCGGTGGGACTTGGA 538
Query 564 TCCAACCAGAAATTGAGGAATCGAATAAGTCCATGTTTAGCCCCGGGACAATGGTGGAAG 623
||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 539 TCCAACCAGAAATTGAGGAATTGGATAAGTCCATGTTTAGCTCCGGGACAATGGTGGAAG 598
Query 624 TGTTTTCTGCCAAAGAAGCTGTGTGGTCCCCTGCAATGGTAGTCAAAGAGACTGATGTGG 683
|||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 599 TGTTTTCTACCAAAGAAGCTGTGTGGTCCCCTGCAATGGTAGTCAAAGAGATTGGTGTGG 658
Query 684 ATGATAAGAAGAAATTCATTGTCAAGGACTGTAATAGGTACCTGAGCTGCAATGGTGATG 743
|||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 659 ATGATAAGAAGAAATTTATTGTGAAGGACTGGAATAGGTACCTGAGCTGCAATGGTGATG 718
Query 744 AGGCGAGACCAACCAACATTGTTAATTCGCGCCGTGTTAGACCCATACCGCCTCCTTCTT 803
| |||||||||| ||| | |||| |||| |||||||||||||||||||||||||||||||
Sbjct 719 ATGCGAGACCAAACAAGACTGTTGATTCTCGCCGTGTTAGACCCATACCGCCTCCTTCTT 778
Query 804 CAGTTGACAAGTATGCATTGTTGGAATCTGTAGAGACGTTTTCTGGTTTGGGATGGCATA 863
| |||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 779 CGGTTGACCAGTATACATTGTTGGAATGTGTAGAGACGTTTTGTGGTTTGGGATGGCATA 838
Query 864 AAGGGCAAGTGAGGAAAATTCTCTCTGAGAACCGTTACACGGTTAGATTAGAGGCTACAC 923
||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||||||
Sbjct 839 AAGGGCAGGTGAGGAAAATTCTCTCTGATAACCGTTACTCGGTTATTTTAGAGGCTACAA 898
Query 924 AGCAGGAATCTACAA-TAAGACACTCAGATCTTAGGCCTTTCATGGTGTGGGAAGATGGA 982
||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 899 AGCAGGAATCTACAATTAA-ACACTCAGATCTTAGGCCTGTCATGGTGTGGGAAGATGGA 957
Query 983 GTTTGGTATAACGATCTAAAGCAAAAACCCATAAAAGAAACTCCTCCAACCATCTTGAAA 1042
|||||| ||||||||| ||||| ||||||||||||||||||| |||||| ||||||||||
Sbjct 958 GTTTGGCATAACGATCCAAAGCCAAAACCCATAAAAGAAACTTCTCCAAACATCTTGAAA 1017
Query 1043 AGGAAGCCAATGCGCTCTTGTTCTGCTGCTAAGTCAATGACTCCT-ACGAGTGCCACAAA 1101
|||||||||||||| ||||||||||||||||| |||||||||||| || |||||||| ||
Sbjct 1018 AGGAAGCCAATGCGATCTTGTTCTGCTGCTAAATCAATGACTCCTAAC-AGTGCCACTAA 1076
Query 1102 GCATTTGAGAAGTTTCCTGAATTCTAAGGAAATTAGCGAGACACCCACTAAAGCAAAATT 1161
|||||||||||||| ||||||| || | |||||||||||||||| ||||||||||||||
Sbjct 1077 GCATTTGAGAAGTTCCCTGAATCCTGACGAAATTAGCGAGACACTCACTAAAGCAAAATC 1136
Query 1162 TGTATCTGCCACTAG-AGAATTAGGAAAAAACAAGGCTGATGCTGTGATGAATGACAAAA 1220
|||| |||||||| | |||||||||||| || |||||||||||||||||| |||||||||
Sbjct 1137 TGTAGCTGCCACT-GAAGAATTAGGAAAGAAGAAGGCTGATGCTGTGATGTATGACAAAA 1195
Query 1221 CTCATCTGCTCATAACCCCTCAAGAAACATCAATAGCCCCGGTCATAACAGTCACACCAT 1280
|||||||| |||||||||| |||| ||||||||||||||| |||||||||| ||||||||
Sbjct 1196 CTCATCTGGTCATAACCCCGCAAGTAACATCAATAGCCCCAGTCATAACAGCCACACCAT 1255
Query 1281 TGAAACAACAAGATGCTGAAACTGAAGGaaaaaaaTCCCCAAAGAAGACACCTGAGCCAG 1340
||||||||| ||| |||||||| |||||||| ||||||||||||||||||| |||||||
Sbjct 1256 TGAAACAACTAGAGGCTGAAACAGAAGGAAATAAATCCCCAAAGAAGACACTTGAGCCAA 1315
Query 1341 TGAAGCATCAGAATGGCTTGGAAAATAGTTCAACTCAACACGAGATGCCTGAGGAGGAGA 1400
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TGAAGAATCAGAATGGCTTGGAAAATAGTTCAACTCAACACGAGATGCCTGAGGAGGAGA 1375
Query 1401 ATAGCAACgaaaagagtagaaaaaggaaaagagaacaaaatcaaaaCTCTAACCTGAATG 1460
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1376 ATAGCAACGAAAAGAGTAGAAAAAGGAAAAGAGAACAAAATCAAAACTCTGACCTGAATG 1435
Query 1461 AAACTGATGAGACTTGCAATGTTTCAAAGGCTGGGGTCAACGGTACAAGTGATACTATAC 1520
||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||
Sbjct 1436 AAACTGATGAGACTTGCAATGGTTCAAAGGCTGGAATCAACGGTACAAGTGATAATATAC 1495
Query 1521 GTGTTGATGATGTTGATGATCAGCCTCTCTCTTCTTGGATAAATATACCTACAGTGCTAT 1580
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1496 GTGTTGATGATGTTGATGATCAGCCTCTCTCTGCTTGGATAAATATACCTACAGTGCTAT 1555
Query 1581 CCTCTGATCAGAGCTCGAATGTGGTGGATAATTCTGCTGCTGATGTTGAGGAAACTCAAG 1640
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1556 CCTCTGATCAGAGCTCGAATGTGGTGAATAATTCTGCTGCTGATGTTGAGGAAACTCAAG 1615
Query 1641 CAAAAGGTGCACTAACGATTGAGCCTTTTACAAAGAATTTGCCATTTTGGAAGACATATG 1700
|||| ||| |||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1616 CAAAGGGTACACTAATAATTGAGCCTTTTACAAAGAATTTGCCATTTTGGAAAACATATG 1675
Query 1701 AAATGGAGAAGGGATACAAGACAGTGCCACAGAATCCTCATTTTAGCCCGTTGTTGGAGT 1760
||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||
Sbjct 1676 AAACAGAGAAGGGATACAAGACAGTACCACAGAATCCTCATTTCAGCCCATTGTTCGAGT 1735
Query 1761 TCAAAGAAGATATTCGTGAATGGTCAGCAGTTGGCATGATGGTGAGTTTCTATGGGTTAT 1820
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1736 TCAAAGAAGATATCCGTGAATGGTCAGCAGTTGGTATGATGGTGAGTTTCTACGGGTTAT 1795
Query 1821 TAGAAGAAGTAAAAAAGCTGCAGCTCGATGTTTCTTCAAGCAAACTAGGTAGCCTCAGTA 1880
|||||||||| ||||| ||||| |||||||||||||| ||||||||| ||||||||||||
Sbjct 1796 TAGAAGAAGTGAAAAATCTGCAACTCGATGTTTCTTCCAGCAAACTAAGTAGCCTCAGTA 1855
Query 1881 CTTGTTTTGCCGAGCTAGAGAAGCATGGTTTCGACATTGCAACCCCTCAGTCACGGATAA 1940
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1856 GTTCTTTTGCCGAGCTAGAGAAGCATGGTTTCGACGTTGCAACCCCTCAGTCACGGATAA 1915
Query 1941 ACAAAGTGTTGTCTCTCCAAGTTGGGCGAGCAAAGAAAGTGGAGGAAAGGAAATGTCTTG 2000
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1916 ACAAAGTGTTGTCTCTCCAAGTTGGGCGAGCAAAGAAAGTGGAGGAAAGAAAATGTCTGG 1975
Query 2001 AGAAGAGGATTGAAGCTGAAGAGATTGAAATGCAAAAATTTGAACACGAGATGGTTGAGG 2060
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1976 AGAAGAGGATTGAAGCTGAAGAGATTGAAATGCAAAAATTTGAACACGAAATGGTTGAGG 2035
Query 2061 TAGAACGCAAAATGTTGGAACTGAAGAGACGAGCAGAGGTTGCGAAAGAGAAGAAAGAAG 2120
||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2036 TAGAACGTAAACTGTTGGAACTGAAGAGACAAGCAGAGGTTGCGAAAGAGAAGAAAGAAA 2095
Query 2121 CGGCGGACAAAATGATTGTCGAAATGAAATCATCTGCGGAAACCATTGATCAAGAGATTG 2180
|| | || |||||||||| ||||||||||||| ||| |||||||| |||||||||||||
Sbjct 2096 CGAAGAACCAAATGATTGTTGAAATGAAATCATGTGCAGAAACCATCGATCAAGAGATTG 2155
Query 2181 CAAATGTGGAGTTGGAGTTTATAACATCTGTGTTGGCTCCGTGGTAA-A--T-AA--GAA 2234
|| |||||||| ||||||||||||||||||||||||||||||||||| | | || |||
Sbjct 2156 CAGATGTGGAGCTGGAGTTTATAACATCTGTGTTGGCTCCGTGGTAATAAGTGAAAAGAA 2215
Query 2235 AA-CGAAACTATGAATGACCCCTCTTAAGCTCGTATTTATTTTGGTAAAATGAAGTAGAT 2293
|| ||| | ||||||||||| ||| |||||| ||||| | |||||||||||||||||
Sbjct 2216 AAACGATATTATGAATGACC--TCT-AAGCTCCTATTT-T---GGTAAAATGAAGTAGAT 2268
Query 2294 GTAAGTGATCTGTCAAATATCTTTAGACCTTATGG 2328
|||||| |||||||||| |||||||| ||||||||
Sbjct 2269 GTAAGTAATCTGTCAAAGATCTTTAGCCCTTATGG 2303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91226136775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5