BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26560.1
Length=1777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472753 jgi|Araly1|472753|fgenesh2_kg.1__2707__AT1G26560.1 2447 0.0
> Ahg472753 jgi|Araly1|472753|fgenesh2_kg.1__2707__AT1G26560.1
Length=1636
Score = 2447 bits (1325), Expect = 0.0
Identities = 1479/1554 (95%), Gaps = 7/1554 (0%)
Strand=Plus/Plus
Query 121 ACATTGAAGGAAGAG--ATGGCTCATAGGAGATTAATCatgacgatgacaaagatgatga 178
||||||||||||||| ||| ||| || ||||| ||||||| ||||| ||||||| |||
Sbjct 87 ACATTGAAGGAAGAGATATGACTCCGAGAAGATTTATCATGATGATGATAAAGATGGTGA 146
Query 179 tgatggtgaccatgatgatgatgatggatAAAACATGCATATGTGCGGACATTTCCAGAG 238
||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 147 TGATGGT-A--ATGATGATGATGATGGATAAGACATGCATATGTGCGGACATTTCCAGAG 203
Query 239 GCAGTTTTCCAAAGGGCTTTGTCTTTGGAACTGCTTCTTCGGCTTTTCAGCATGAAGGAG 298
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 204 GCAGTTTTCCAAAGGGCTTTGTCTTTGGAACTGCTTCTTCGGCTTTTCAGCACGAAGGAG 263
Query 299 CGGTGAAGGCAGAAGGCAGAGGTCCTACGATATGGGACACATTTTCCCACACTTTTGGTA 358
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 CAGTGAAGGCAGAGGGCAGAGGTCCTACGATATGGGACACATTTTCCCACACTTTTGGTA 323
Query 359 AAATCACCGATTTTAGCAATGCTGATGTCGCTGTTGATCAGTATCATCGTTACGAGGAAG 418
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 324 AAATCACCGATTTTAGCAATGCTGATGTCGCTGTTGATCAGTACCATCGTTACGAGGAAG 383
Query 419 ATGTACAACTTATGAAGAATATGGGAATGGACGCTTACAGATTTTCCATTTCTTGGACCC 478
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 384 ATGTACAACTTATGAAAAACATGGGAATGGACGCTTACAGATTTTCTATTTCTTGGACCC 443
Query 479 GCATCTTTCCAAATGGTGTTGGACATATAAATGAAGCCGGAATCGATCACTACAACAAAC 538
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 444 GCATCTTTCCAAATGGTGTTGGACAGATAAACGAAGCCGGAATCGATCACTACAACAAAC 503
Query 539 TCATAAATGCTTTACTTGCTAAAGGGATCGAGCCGTACGTGACACTGTACCACTGGGATC 598
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 504 TCATAAATGCTTTACTTGCTAAAGGGATCGAGCCGTACGTGACACTGTACCATTGGGACC 563
Query 599 TTCCACAAGCACTTCATGATCGATACCTCGGTTGGCTAAACCCACAAATCATAAATGATT 658
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 564 TTCCTCAGGCACTTCATGATCGATACCTCGGTTGGCTAAACCCACAAATCATCAATGATT 623
Query 659 TTGCAGCGTATGCGGAGGTTTGTTTCCAGAGATTTGGAGATAGAGTGAAGCACTGGATCA 718
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 624 TTGCAGCGTATGCGGAGGTGTGTTTCCAGAGATTTGGAGATAGAGTGAAGCATTGGATTA 683
Query 719 CGTTCAACGAGCCACACACGTTCGCGATACAAGGCTATGATGTTGGCCTACAAGCTCCAG 778
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 684 CATTCAACGAGCCACACACATTCGCGATACAAGGCTATGACGTTGGCCTACAAGCTCCAG 743
Query 779 GCCGTTGCACTATTCTTTTTAAGCTCACTTGTCGCGAAGGAAACTCATCGACCGAGCCTT 838
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 744 GCCGTTGCACTATTCTTTTTAAGCTCACTTGTCGCGCAGGAAACTCATCGACCGAGCCTT 803
Query 839 ACATTGTTGGTCACAATGTTATTTTAACTCACGCCACAGTATCCGATATCTATAGGAAAA 898
||||||| ||||||||||| ||| |||||||||| || |||||||||||||| |||||||
Sbjct 804 ACATTGTCGGTCACAATGTGATTCTAACTCACGCTACCGTATCCGATATCTACAGGAAAA 863
Query 899 AGTAT-AAGGCAAAGCAAGGAGGTTCGTTAGGGATTGCGTTTGATGTAATGTGGTTTGAA 957
||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 864 AGT-TCAAGGCAAAGCAAGGAGGTTCGTTAGGGATAGCGTTTGATGTAATGTGGTTTGAA 922
Query 958 CCAGAGTCGAACAAGACAGAGGACATTGAAGCTGCACAAAGAGCTCAAGACTTTCAACTT 1017
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 CCGGAGTCAAATAAGACAGAGGACATTGAAGCTGCACAAAGAGCTCAAGACTTTCAACTT 982
Query 1018 GGCTGGTTTTTGGATCCGTTGATGTTTGGGGATTACCCAAGCTCGATGAGAAGCAGAGTC 1077
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 983 GGCTGGTTTTTGGATCCGTTGATGTTTGGGGATTATCCGAGCTCGATGAGAAGCAGAGTC 1042
Query 1078 GGAAGCAGATTACCGGTGTTTACAGGATCTCAATCTTCTCTGGTGAAGGGTTCTTTAGAT 1137
||||||||||||||| |||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 1043 GGAAGCAGATTACCGACGTTTACGGGATCTCAATCTGCTCTTGTGAAGGGTTCTTTAGAT 1102
Query 1138 TTTGTAGGGATTAATCACTACACAACGTACTACGCAAGGAACAATGCCACCAATCTCATT 1197
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 TTTGTAGGAATTAATCACTACACAACGTACTACGCAAGGAACAATGCCACCAATCTCATT 1162
Query 1198 GGCACTCTTCTACACGACGCCGTTTCTGATTCTGGAACCGTCACTCTACCGTTTAAGGGT 1257
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1163 GGCACCCTTCTACACGACGCCATTTCTGATTCTGGAACCGTCACTCTACCGTTTAAGGGT 1222
Query 1258 TTAAGCACGATTGGAGATAGGGCAAGTTCGATATGGTTGTACATAGTGCCTAGAGGGATG 1317
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1223 TTAAGCACAATTGGAGATAGGGCAAGTTCCATATGGTTGTACATAGTGCCTAGAGGGATG 1282
Query 1318 AGAAGCTTGATGAATTACATTAAACATAGATATGGAAACCCTCCAGTCTTCATCACTGAA 1377
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1283 AGAAGCTTGATGAATTACATCAAACATAGATATGGAAACCCTCCAGTCTTTATCACTGAA 1342
Query 1378 AATGGAATGGACGACCCAAACAGCATTCTGATCTCAAGAAAAGACGCTCTCAAAGATGCA 1437
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1343 AATGGAATGGACGATCCAAACAGCATTCTGATCTCAAGAAAAGACGCTCTTAAAGATGCA 1402
Query 1438 AAGAGGATCAAATACCATCATGATTACCTTTCTAGCTTACAAGCTTCGATAAAAGAGGAT 1497
||||| |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1403 AAGAGAATCAGATACCATCATGATTATCTTTCGAGCTTACAAGCTTCGATAAAAGAGGAT 1462
Query 1498 GGATGTAATGTCAAAGGGTACTTCGTATGGTCGCTATTGGACAATTGGGAATGGGCAGCA 1557
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1463 GGATGTAATGTGAAAGGGTACTTTGTGTGGTCGCTATTGGACAATTGGGAATGGGCAGCA 1522
Query 1558 GGTTATAGTTCAAGATTTGGTCTCTACTTCGTTGATTACAGAGACAACCTCAAGAGATAT 1617
|||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1523 GGTTATAGTTCAAGGTTTGGTCTCTACTTCGTTGATTATAGAGACAATCTCAAGAGATAT 1582
Query 1618 CCTAAAGACTCTGTTCATTGGTTCACTTCTTTCTTAAACTCCACTTCTTGATTT 1671
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1583 CCTAAGGACTCTGTTCATTGGTTCACTTCTTTCTTGAACTCCACTTCTTGATTT 1636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66696018995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5