BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26580.1
Length=2788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472751 jgi|Araly1|472751|fgenesh2_kg.1__2705__AT1G26580.1 1953 0.0
> Ahg472751 jgi|Araly1|472751|fgenesh2_kg.1__2705__AT1G26580.1
Length=2471
Score = 1953 bits (1057), Expect = 0.0
Identities = 1232/1316 (94%), Gaps = 14/1316 (1%)
Strand=Plus/Plus
Query 976 GAGTTTATTGCATTTGATTACCAATTATGCAAGTTGAAAATGGGATTCAAACGCCCTTTT 1035
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 740 GAGTTTATTGCATTTGATTACCCATTATGCAGGTTGAAAATGGGATTCAAACGCCCTTTT 799
Query 1036 GAAGATGAGAAGTTTCATGAGCTCCCACTCAAACATTCCAGACAACTTGACTATAACGAT 1095
||||||||||| |||||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct 800 GAAGATGAGAAATTTCATGAGCTCCCACTCAAACATTCTAGACAACTTGGCTATACCGAT 859
Query 1096 AAGTCTACTCAGTTTGAAGAAGTTAGTCCTCACCATGCTGGTTTCCAGAAAACTGTTGCC 1155
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 860 AAGTCGACTCAGTTTGAAGAAGTTAGTCCTCACCATGCTGCTTTCCAGAAAACTGTTGCC 919
Query 1156 ACGGTGAATGAGGGAAATCTTTGTAAGTCACAAGGCGGTGAGTCATCTGAAGGTGATATG 1215
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 920 ACGGTGAATGAGGGAAATCTTTGTAAGTCACAAGGCGGTGAATCATCTGATGGTGATATG 979
Query 1216 TTTGATGAAGAGTCCAATTATGTTTACCCTGG-TCATGACATGGATGATACTTTTACATG 1274
||||| ||||||||||||| ||||||||| || |||||||||||||||||||||||||||
Sbjct 980 TTTGACGAAGAGTCCAATTTTGTTTACCC-GGTTCATGACATGGATGATACTTTTACATG 1038
Query 1275 GGATACACAAGGTTGTGGTGGAAGAGATGCAACTTACTCTCCCCATTCTGGAAAGTATTT 1334
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1039 GGATACAAAAGGTTGTGGTGGAAGAGATGCAACTAACTCTCCCCATTCTGGAAAGTATTT 1098
Query 1335 TGAGCTAGATATACCTCCAAGAGTATTTGCTCCTGTTGAGACTTTCTATTATTTACTCTT 1394
||||||||||||||| |||||||| ||||||||||||||||||||||||| ||| ||| |
Sbjct 1099 TGAGCTAGATATACCCCCAAGAGTGTTTGCTCCTGTTGAGACTTTCTATTCTTTCCTCCT 1158
Query 1395 GGATCAACGTGCCAAAAAGCAAGTGCCCATTGGACCAGGTCATCAAGCCGAGATTCCTGA 1454
|||||||| ||||| ||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1159 GGATCAACCTGCCAGAAAGCAAGTGCCCATTGGACCAGGTTATCAAGCCGAAATTCCTGA 1218
Query 1455 ATGGGAAGGCAGTCAGACTGGGAACATAGAAACCTCAGGCATGTCAGTTCAAAATCACAT 1514
||||||||||||||||||||||| || |||| ||||||||| || ||||||||||||||
Sbjct 1219 ATGGGAAGGCAGTCAGACTGGGAGCACAGAACCCTCAGGCACGTTGGTTCAAAATCACAT 1278
Query 1515 TAGTGGATGTGCTGATGGTGAGAAGCTGTTTGGTACATCTGTTATTCCCATGCCTGGTTT 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 TAGTGGATGTGCTGATGGTGAGAAGCTGTTTGGTACATCTGTTATTCCCATGCCTGGTTT 1338
Query 1575 GACTACAGTTGCACATATTGATGACATAGTAGGGAAGGGTAGAAAGTTTTGTGTATGCCG 1634
||||||| ||| |||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1339 GACTACATTTGTACATATGGATGACATAGTAGGGAAGGGTAGAAAGTTCTGTGTCTGCCG 1398
Query 1635 GGACA-GGGATTCTGTCAGGTGTGTGTGCCAGCACATTAAAGAAGCTAGAGAAGAATTAG 1693
||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1399 GGACATGGG-TTCTGTCAGGTGTGTGTGCCAGCACATCAAAGAAGCTAGAGAAGAATTAG 1457
Query 1694 TTAAGACGTTTGGAAATGAGACATTCAAAGAACTGGGTTTATGTGAGATGGGGGAA-AAA 1752
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |||
Sbjct 1458 TTAAGACGTTTGGAAATGAGACATTCAAAGTCCTGGGCTTATGTGATATGGGGGAAGAAA 1517
Query 1753 GGTGCACTGAAGTGGAGCGATGAAGATGCACAACTTTTTCATGAGGTTGTTTATTCCAAT 1812
|||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1518 -TTGCAAGGAACTGGAGCGATGAAGATGCACAACTTTTTAATGAGGTTGTTTATTCCAAT 1576
Query 1813 CCTGTAACATTGGGGCAGAATTTTTGGAGGCACTTGGAAGCTGCATTTTGTTCCCGAACT 1872
|||||||||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1577 CCTGTAACATCGGGTCAGAACTTTTGGAAGCACTTGGAAGCTGCATTTTGTTCCCGAACT 1636
Query 1873 CAGAAAGAGATTGTTAGCTTCTACTTTAACGTATTTGTCCTCAGAAGGAGAGCCATCCAG 1932
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1637 CAGAAAGAGATTGTTAGCTTCTACTTTAACGTTTTTGTCCTCGGAAGGAGAGCCATCCAA 1696
Query 1933 AACAGAGCTTTTATATTGGACATTGATAGTGATGATGATGAATGGCATGGATGTTATGGA 1992
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1697 AACAGAGCTTTTATATTGGACATTGACAGTGATGATGATGAATGGCATGGATGTTATGGA 1756
Query 1993 GGCTCTTCTGGTACTCGTTATGTAGAAGAAGATGAAGAAGACTCTGCAATCGAGTCTCCT 2052
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1757 GGCTCTTCGGGTACTCGTTATGTTGAAGAAGATGAAGAAGACTCTGCTATCGAGTCTCCT 1816
Query 2053 CTTCATCAAGGGACTAAGAAAGTGTATCCACTCCATCATGAAGAAGG-TGAAGAAGATGT 2111
||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1817 CTTCATCAAGGGACTGAGAAAGTGTATCCACTCCATCACGAAGA-GGATGAAGAAGATGC 1875
Query 2112 TAGTCATAGCAGCAATGATGAAGATGATG---ATG---ATACTAAAGAAGGTGGCACTGG 2165
||| ||||| |||||||||||||||||| ||| ||| || |||| ||||||||||
Sbjct 1876 CAGTAATAGCGGCAATGATGAAGATGATGCCTATGTTGATAATAGAGAAAGTGGCACTGG 1935
Query 2166 ACTGTATGACGAGCACAAGATGAGTTCAACAGTTGAATACATGGATAGATTTTCTGGGAA 2225
||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1936 ACTGTATGACGAGCACACGATGAATTCAACAGTTGAATATATGGATAGATTTTCTGGGAA 1995
Query 2226 CAATGGAGAGAGATTGAACGTGGAAGATGACTCGTGCACTTCCTTTGAACTTGCAC 2281
|||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1996 CAATGGGGAGAGATTGAACTTGGAAGATGACTCGTGCACGTCCTTTGAACTTGCAC 2051
Score = 671 bits (363), Expect = 0.0
Identities = 636/758 (84%), Gaps = 57/758 (8%)
Strand=Plus/Plus
Query 36 TTTTTCGATATTATCTTCTCTCGTCTTCTTCCCCAAAAGTTTCATCGTAAATCCAAattt 95
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||
Sbjct 1 TTTTTCGATATTATCTTCTCTCGTCTTCGTCCCCAAAACTTTCATCGTAAATCCATA-TT 59
Query 96 ttctgtctttttctttaattttattgggattttttctAAATTATTCTTGC---T-A-TTG 150
|||| |||||||| || ||||| ||||| ||||||||||||| |||||| | | |||
Sbjct 60 TTCTATCTTTTTC-TT--TTTTACTGGGA-TTTTTCTAAATTAATCTTGCAATTGATTTG 115
Query 151 -ATA-TCATCTAATTCTCGTTCCCCTCTATCTATTGATACTAATTTTATTTCGATTGTCa 208
| | ||||| |||||||||| ||| | || | || || | || || || ||| |
Sbjct 116 TAGATTCATCAAATTCTCGTT-CCC-C--TC---T-AT-CT-A-TTGATATCAATT-T-- 161
Query 209 aaaaaaaaaaaaTCTAGGGTTAGGGTACTTGATCTCTTCTCTAGTTGTTTAATATCTTGA 268
|||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 162 -----------TTCTAGGGTTAGGGTTGTTGATCTCCTCTCTAGTTGTTTAATATCTTGA 210
Query 269 TCTATCGTTTTCTTTCACTATTTACATCAATTTTGATAAATATTCCTTTCGATTTTGATG 328
|| ||||||| ||||| ||||||||||| ||||| ||||||||||||| |||||||||
Sbjct 211 TCCATCGTTTCCTTTCGCTATTTACATCGATTTTCTTAAATATTCCTTTTAATTTTGATG 270
Query 329 TCAATTTCATGTTTTTCGCCCCCGATTGAGATCTAGGGTTCATATTAATCGATCTAGCTT 388
|||||||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||
Sbjct 271 TCAATTTCATGTTTTTCGTCCCCGATTGAAATCTAGGGTTCATATTTATCGATCTATCTT 330
Query 389 AGGGCTTTCCAGATCTGTAAATTGTTAGAGGGTTTTCTC-TGAGTTTGTATAGGTTTGAT 447
|||||||||||||||| |||||| | | |||| |||||| ||| ||||||||| ||||||
Sbjct 331 AGGGCTTTCCAGATCTATAAATTATCAAAGGGCTTTCTCTTGA-TTTGTATAGATTTGAT 389
Query 448 CAATTCTTATCCAATTCATACTTGATTTGGTTAATTTTTGGGTAGT-TGGAGTCTAGGGT 506
|||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||
Sbjct 390 CAATTCTTATCCAATTCATACTTGATTTGGTTGATTTTTGGGTAGGCTCGAATCTAGGGT 449
Query 507 TAGGGTTTCTTCTGATTTGGGGAtttt--ttattttt---CCAGCTTAAGCTTTTAAAAG 561
||||||||||||||||||||||||||| || ||||| ||| ||||||||| |||| |
Sbjct 450 TAGGGTTTCTTCTGATTTGGGGATTTTCGTTTTTTTTTTTCCAACTTAAGCTTCTAAAGG 509
Query 562 CCTGAAA-TTCCTATTGGTTATCCCTATTTTTAGTCTAT-TGGTGGCGTTCTAGTATGGT 619
| ||||| ||||||||| |||||| ||| ||||| | ||||||||||||||| ||||
Sbjct 510 C-TGAAAATTCCTATTGAACGTCCCTAGTTTAAGTCT-TCTGGTGGCGTTCTAGTTTGGT 567
Query 620 TCTATCTTTT-TGAAGTTGGCCTAAAACTTTATCTGAGCTTACTTCTTTAGAGAGGTGAG 678
|||||| || |||||||||||| |||| ||||| |||||||||| ||||||||||| ||
Sbjct 568 TCTATCCCTTGTGAAGTTGGCCTGAAACGTTATCCGAGCTTACTTGTTTAGAGAGGTAAG 627
Query 679 TAATATACTACATGTTAACTGGACATTTGTTCCTGTCTGAACTGTTTTTTAAGCATTAGT 738
|||||| | | || ||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct 628 TAATATGC-A--TGGTAACTGGACATTTGTTCTTGTCTGAACTGGTTTATAAGCATTAGT 684
Query 739 --TCT-T-TGTTGTGGTGGATGTGTGTTAAACTAGCAT 772
| | | |||||||||| |||| ||||| |||| |||
Sbjct 685 AGTTTCTATGTTGTGGTGCATGTTTGTTATACTATCAT 722
Score = 503 bits (272), Expect = 3e-141
Identities = 374/419 (89%), Gaps = 23/419 (5%)
Strand=Plus/Plus
Query 2343 GAAGGATTGTAATGATCCAAT--A--GATACCAAAGTCTGGGATGCTTCGAGGTGTTTGA 2398
|||| | |||||||||||||| | || || |||||||||| ||||| |||||||| ||
Sbjct 2067 GAAGAAGTGTAATGATCCAATGGACGGACACTAAAGTCTGGGCTGCTTTGAGGTGTTCGA 2126
Query 2399 ATGTTCCAACAAATGGCAAAGATCTTCAACCAACCCGGAGAATCATGGAGG-AGATATTT 2457
||||| |||||||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 2127 ATGTTTCAACAAATGGCAAAGATCTTCAACCAACGCGGAGAATCATGGAGGAAAATATTT 2186
Query 2458 GGTAATGGATGC-TGGGAAAACAAGGCAAGAAACAAGT---GAAGAAGCAAACATCATTC 2513
|||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2187 GGTAATGGAT-CATGGGAAAACAAGGCAAGAAACAAGTGAAGAAGAAGCAAACATCATTC 2245
Query 2514 TCAACAACTTGCAGAATCATGGGAGAGATATTTGGGGTTTATGGGGTCCTCCTTCAAAAA 2573
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 2246 TCAACAACTTGCAGAATCCTGGGAGAGATATTTGGGGTTTATGGGGTCCTCCTACAAAAA 2305
Query 2574 TGTTCCTATTAAAAAGTAGTGAGAGTTTTAGACTTAAAAGAATTTTCCAGCCTTTGTTTT 2633
|||||||||||||| |||| |||| |||||||||||| ||||||||||||||||||||
Sbjct 2306 TGTTCCTATTAAAA-GTAGAGAGACTTTTAGACTTAA--GAATTTTCCAGCCTTTGTTTC 2362
Query 2634 TCATGTGGATTCTTGTGAATGGGCTGTTGTTTCACTTTTCTTGGGGCCCTCTTTCTTAAA 2693
||||||| | | |||||||||||||| |||||||||||||||||||||| |||
Sbjct 2363 TCATGTG-A--------A-TGGGCTGTTGTTTCTCTTTTCTTGGGGCCCTCTTTCTCAAA 2412
Query 2694 ATCATTTACTTAGAATGTCATAATCTCTCTGATTTGCTGTAAAAGATTTTCTCTTCTTT 2752
||| ||| |||||||||||| |||||||||||||||| |||||||||||||||| ||||
Sbjct 2413 ATCCTTTGCTTAGAATGTCAGAATCTCTCTGATTTGCAGTAAAAGATTTTCTCTCCTTT 2471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105205256690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5