BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G26590.1 Length=1086 Score E Sequences producing significant alignments: (Bits) Value Ahg472750 jgi|Araly1|472750|fgenesh2_kg.1__2704__AT1G26590.1 1336 0.0 Ahg472748 jgi|Araly1|472748|fgenesh2_kg.1__2702__AT1G26610.1 150 2e-35 > Ahg472750 jgi|Araly1|472750|fgenesh2_kg.1__2704__AT1G26590.1 Length=1122 Score = 1336 bits (723), Expect = 0.0 Identities = 1004/1131 (89%), Gaps = 54/1131 (5%) Strand=Plus/Plus Query 1 ATGGAGGAAGGGAAAGAGAA-TTCGTTTTTGTGCAAGTACTGTTACAAGACGTTTCCTTC 59 |||||||||||||||||||| || |||| ||||||||||||| |||||| ||||||||| Sbjct 1 ATGGAGGAAGGGAAAGAGAAGTT-GTTTACGTGCAAGTACTGTCACAAGAAGTTTCCTTC 59 Query 60 TGGGAAAGCACTCGGTGGTCACATTAGAATTCATACGAACGAGAATTCA----G-T-TG- 112 ||||||| |||| || |||||||||||||||||||| |||||||||||| | | || Sbjct 60 TGGGAAATCACTTGGAGGTCACATTAGAATTCATACCAACGAGAATTCAGTTGGTTCTGA 119 Query 113 --GTTACAATGGC---AATAAGAAGAAGAGGTTGGTGGATCAGAGAAAGATGATGGCTCA 167 ||||||||| | || ||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TCGTTACAATGCCAAGAAGAAGAAGAAGAGGTTGGTGGATCAGAGAAAGATGATGGCTCA 179 Query 168 GAAACATAAGCAACAACAACAAGTTGGTTGCAGAGAATGTGGTAGAGTGTTCGTTTCTTT 227 |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 180 GAAACAGAAGCAACAACAACAAGTTGGTTGCAGAGAATGTGGTAAAGTGTTCGTTTCTTT 239 Query 228 GAAAGCTCTTAGAGGTCACATGGCTTG---TCACGGTGAGGTAAAGAAGATGTTGATGGA 284 ||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| | Sbjct 240 GAAAGCTCTTAGAGGTCACATGGCTTGTCATCACTGTGAGGGAAAGAAGATGTTGAT-G- 297 Query 285 TGATAATAGCCAATCTGATACTGAAAGTGAGACTTCCTCAGCTCCTATGAGGAAAAGATC 344 | ||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||| Sbjct 298 -G---ATAGCCAATCTGATACTGAGACTGAGACTTCATCAGCTCCTATCAGGAAAAGATC 353 Query 345 CAAGAGGGTGGTCATGAAACAATCAAATTCTGAATCTTTGAGTAATGGGAGCTCGTCTTT 404 |||||||||||| ||||||| ||| |||||||||||||| |||||||||||||| ||||| Sbjct 354 CAAGAGGGTGGTGATGAAACGATCCAATTCTGAATCTTTTAGTAATGGGAGCTCCTCTTT 413 Query 405 TGGTTCTGAGATTGACCAAGAACG-TAGGGATGGGGCTTATAATTTGATGATGTTGTCGA 463 || ||||||||||||||||||| | |||||||| |||| ||| ||||||| | ||||||| Sbjct 414 TGTTTCTGAGATTGACCAAGAA-GTTAGGGATGCGGCTGATACTTTGATGTTTTTGTCGA 472 Query 464 GTGATTCTAGTAGTTTCAAGAAAAGACGTAACATGGTGATGAATTCTCTTGGTGAGTCAT 523 |||||||| |||||||||||||||||||| || |||||||||| ||||| |||||||||| Sbjct 473 GTGATTCTCGTAGTTTCAAGAAAAGACGTGACTTGGTGATGAACTCTCTGGGTGAGTCAT 532 Query 524 CTGACAACAACTCTGCGATTGTTGAGAATAAGTCATCTTCAGGGGATGAGTTTAAGATC- 582 |||||||| ||||| || |||| |||| ||||||||||||||| |||||| | |||||| Sbjct 533 CTGACAACGACTCTTCGGTTGTGGAGACTAAGTCATCTTCAGGAGATGAGCTAAAGATCT 592 Query 583 ---A--T---GAAT---G---T---GA-A--G-AA--TGCAGTAGATGACCAATGGAGAT 619 | | |||| | | || | | || || |||||||||||| | ||||| Sbjct 593 TTAATGTGAAGAATCAGGTTTTAGAGACAGGGAAAGTTGGAGTAGATGACCATTTGAGAT 652 Query 620 C---TGCTGATGATGATGGAGTTAGTCTCTGTGATTCAGATGGCTCTGATTCTGATTACT 676 | || |||||||||||| |||||||| ||||||||||||| ||||||||||||||||| Sbjct 653 CTGATGATGATGATGATGGTGTTAGTCTTTGTGATTCAGATGACTCTGATTCTGATTACT 712 Query 677 TCATGAATGGTCCAAGTAAGTCGGAGTCAGACATTTCTGTTGACAGGAACACTGGATTTG 736 |||| ||||| ||||||||||| || ||||||||||||||||||| |||||||||||||| Sbjct 713 TCATAAATGGCCCAAGTAAGTCAGATTCAGACATTTCTGTTGACAAGAACACTGGATTTG 772 Query 737 GATCTGGATTCAACAACTCATTGATCAGGTTCAGGAATAGTAATGAGGGAGGAACAAAGT 796 |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 773 GATCTGGATTCAACAACTCATTGAACAGGTTCAGGAATAGTAATGAGGGAGGATCAAAGT 832 Query 797 ATGAGCTGAGCAAAAGCAAGAGAGCCTTGTTTTCTTATGAAACTGATTCATGTGCAGACA 856 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 833 ATGAGCTGAGCAAAAGCAAGAGAGCCTTGTTTTCTTATGAAACTGAATCATGTGCAGACA 892 Query 857 CAAACAGCAAGATTCATCATAGGTTCAAAGATAGCAAATCCTCAATGGTTAAGAAAGAAG 916 ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 893 CAAACAGCAAGATTCATCATAGGTTCAGAGATAGCAAATCCTCAGTGGTTAAGAAAGAAA 952 Query 917 GTGGTGAGAAGGTGA-AGAGCAAAGGTCATGAGTGCCCAATTTGCTTCAGGATGTTCAAA 975 ||| ||||||| || | ||||||||||||||||| ||||||||||||| |||||||||| Sbjct 953 GTGATGAGAAGAAGACA-AGCAAAGGTCATGAGTGTCCAATTTGCTTCAAGATGTTCAAA 1011 Query 976 TCAGGCCAAGCTTTAGGTGGTCACAAGAGATCACATTCCATTGCAAACCACGCAGCTGAA 1035 |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1012 TCAGGCCAAGCTTTAGGTGGTCACAAGAGATCACATTCCATTGCAAACCAAGTAGCTGAT 1071 Query 1036 ATGCGTAACCAAATCGATCTCTATCTTCCTGTTTCGGATACTGATGAATGA 1086 | ||||||||||||||||||| ||||| ||| ||| ||||||||||||||| Sbjct 1072 ACGCGTAACCAAATCGATCTCAATCTTACTGATTCAGATACTGATGAATGA 1122 > Ahg472748 jgi|Araly1|472748|fgenesh2_kg.1__2702__AT1G26610.1 Length=1780 Score = 150 bits (81), Expect = 2e-35 Identities = 117/134 (87%), Gaps = 4/134 (3%) Strand=Plus/Plus Query 887 ATAGCAAATCCTCAATGGTTAAGAAAG-AAGGTGGTG-AGAAGGTGAAGAGCAAAGGTCA 944 |||| || ||| |||||||||| |||| || |||||| | |||| ||| | ||||||||| Sbjct 1379 ATAGTAAGTCCGCAATGGTTAATAAAGCAA-GTGGTGCA-AAGGAGAAAAACAAAGGTCA 1436 Query 945 TGAGTGCCCAATTTGCTTCAGGATGTTCAAATCAGGCCAAGCTTTAGGTGGTCACAAGAG 1004 ||||| || |||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 1437 CGAGTGTCCGATTTGCTTCAGGGTGTTCAAATCAGGACAAGCTTTAGGTGGTCACAAGAG 1496 Query 1005 ATCACATTCCATTG 1018 |||||||| ||||| Sbjct 1497 ATCACATTTCATTG 1510 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40448414937 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5