BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26590.1
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472750 jgi|Araly1|472750|fgenesh2_kg.1__2704__AT1G26590.1 1336 0.0
Ahg472748 jgi|Araly1|472748|fgenesh2_kg.1__2702__AT1G26610.1 150 2e-35
> Ahg472750 jgi|Araly1|472750|fgenesh2_kg.1__2704__AT1G26590.1
Length=1122
Score = 1336 bits (723), Expect = 0.0
Identities = 1004/1131 (89%), Gaps = 54/1131 (5%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGGGAAAGAGAA-TTCGTTTTTGTGCAAGTACTGTTACAAGACGTTTCCTTC 59
|||||||||||||||||||| || |||| ||||||||||||| |||||| |||||||||
Sbjct 1 ATGGAGGAAGGGAAAGAGAAGTT-GTTTACGTGCAAGTACTGTCACAAGAAGTTTCCTTC 59
Query 60 TGGGAAAGCACTCGGTGGTCACATTAGAATTCATACGAACGAGAATTCA----G-T-TG- 112
||||||| |||| || |||||||||||||||||||| |||||||||||| | | ||
Sbjct 60 TGGGAAATCACTTGGAGGTCACATTAGAATTCATACCAACGAGAATTCAGTTGGTTCTGA 119
Query 113 --GTTACAATGGC---AATAAGAAGAAGAGGTTGGTGGATCAGAGAAAGATGATGGCTCA 167
||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCGTTACAATGCCAAGAAGAAGAAGAAGAGGTTGGTGGATCAGAGAAAGATGATGGCTCA 179
Query 168 GAAACATAAGCAACAACAACAAGTTGGTTGCAGAGAATGTGGTAGAGTGTTCGTTTCTTT 227
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 GAAACAGAAGCAACAACAACAAGTTGGTTGCAGAGAATGTGGTAAAGTGTTCGTTTCTTT 239
Query 228 GAAAGCTCTTAGAGGTCACATGGCTTG---TCACGGTGAGGTAAAGAAGATGTTGATGGA 284
||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |
Sbjct 240 GAAAGCTCTTAGAGGTCACATGGCTTGTCATCACTGTGAGGGAAAGAAGATGTTGAT-G- 297
Query 285 TGATAATAGCCAATCTGATACTGAAAGTGAGACTTCCTCAGCTCCTATGAGGAAAAGATC 344
| ||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||
Sbjct 298 -G---ATAGCCAATCTGATACTGAGACTGAGACTTCATCAGCTCCTATCAGGAAAAGATC 353
Query 345 CAAGAGGGTGGTCATGAAACAATCAAATTCTGAATCTTTGAGTAATGGGAGCTCGTCTTT 404
|||||||||||| ||||||| ||| |||||||||||||| |||||||||||||| |||||
Sbjct 354 CAAGAGGGTGGTGATGAAACGATCCAATTCTGAATCTTTTAGTAATGGGAGCTCCTCTTT 413
Query 405 TGGTTCTGAGATTGACCAAGAACG-TAGGGATGGGGCTTATAATTTGATGATGTTGTCGA 463
|| ||||||||||||||||||| | |||||||| |||| ||| ||||||| | |||||||
Sbjct 414 TGTTTCTGAGATTGACCAAGAA-GTTAGGGATGCGGCTGATACTTTGATGTTTTTGTCGA 472
Query 464 GTGATTCTAGTAGTTTCAAGAAAAGACGTAACATGGTGATGAATTCTCTTGGTGAGTCAT 523
|||||||| |||||||||||||||||||| || |||||||||| ||||| ||||||||||
Sbjct 473 GTGATTCTCGTAGTTTCAAGAAAAGACGTGACTTGGTGATGAACTCTCTGGGTGAGTCAT 532
Query 524 CTGACAACAACTCTGCGATTGTTGAGAATAAGTCATCTTCAGGGGATGAGTTTAAGATC- 582
|||||||| ||||| || |||| |||| ||||||||||||||| |||||| | ||||||
Sbjct 533 CTGACAACGACTCTTCGGTTGTGGAGACTAAGTCATCTTCAGGAGATGAGCTAAAGATCT 592
Query 583 ---A--T---GAAT---G---T---GA-A--G-AA--TGCAGTAGATGACCAATGGAGAT 619
| | |||| | | || | | || || |||||||||||| | |||||
Sbjct 593 TTAATGTGAAGAATCAGGTTTTAGAGACAGGGAAAGTTGGAGTAGATGACCATTTGAGAT 652
Query 620 C---TGCTGATGATGATGGAGTTAGTCTCTGTGATTCAGATGGCTCTGATTCTGATTACT 676
| || |||||||||||| |||||||| ||||||||||||| |||||||||||||||||
Sbjct 653 CTGATGATGATGATGATGGTGTTAGTCTTTGTGATTCAGATGACTCTGATTCTGATTACT 712
Query 677 TCATGAATGGTCCAAGTAAGTCGGAGTCAGACATTTCTGTTGACAGGAACACTGGATTTG 736
|||| ||||| ||||||||||| || ||||||||||||||||||| ||||||||||||||
Sbjct 713 TCATAAATGGCCCAAGTAAGTCAGATTCAGACATTTCTGTTGACAAGAACACTGGATTTG 772
Query 737 GATCTGGATTCAACAACTCATTGATCAGGTTCAGGAATAGTAATGAGGGAGGAACAAAGT 796
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 773 GATCTGGATTCAACAACTCATTGAACAGGTTCAGGAATAGTAATGAGGGAGGATCAAAGT 832
Query 797 ATGAGCTGAGCAAAAGCAAGAGAGCCTTGTTTTCTTATGAAACTGATTCATGTGCAGACA 856
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 833 ATGAGCTGAGCAAAAGCAAGAGAGCCTTGTTTTCTTATGAAACTGAATCATGTGCAGACA 892
Query 857 CAAACAGCAAGATTCATCATAGGTTCAAAGATAGCAAATCCTCAATGGTTAAGAAAGAAG 916
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 893 CAAACAGCAAGATTCATCATAGGTTCAGAGATAGCAAATCCTCAGTGGTTAAGAAAGAAA 952
Query 917 GTGGTGAGAAGGTGA-AGAGCAAAGGTCATGAGTGCCCAATTTGCTTCAGGATGTTCAAA 975
||| ||||||| || | ||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 953 GTGATGAGAAGAAGACA-AGCAAAGGTCATGAGTGTCCAATTTGCTTCAAGATGTTCAAA 1011
Query 976 TCAGGCCAAGCTTTAGGTGGTCACAAGAGATCACATTCCATTGCAAACCACGCAGCTGAA 1035
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1012 TCAGGCCAAGCTTTAGGTGGTCACAAGAGATCACATTCCATTGCAAACCAAGTAGCTGAT 1071
Query 1036 ATGCGTAACCAAATCGATCTCTATCTTCCTGTTTCGGATACTGATGAATGA 1086
| ||||||||||||||||||| ||||| ||| ||| |||||||||||||||
Sbjct 1072 ACGCGTAACCAAATCGATCTCAATCTTACTGATTCAGATACTGATGAATGA 1122
> Ahg472748 jgi|Araly1|472748|fgenesh2_kg.1__2702__AT1G26610.1
Length=1780
Score = 150 bits (81), Expect = 2e-35
Identities = 117/134 (87%), Gaps = 4/134 (3%)
Strand=Plus/Plus
Query 887 ATAGCAAATCCTCAATGGTTAAGAAAG-AAGGTGGTG-AGAAGGTGAAGAGCAAAGGTCA 944
|||| || ||| |||||||||| |||| || |||||| | |||| ||| | |||||||||
Sbjct 1379 ATAGTAAGTCCGCAATGGTTAATAAAGCAA-GTGGTGCA-AAGGAGAAAAACAAAGGTCA 1436
Query 945 TGAGTGCCCAATTTGCTTCAGGATGTTCAAATCAGGCCAAGCTTTAGGTGGTCACAAGAG 1004
||||| || |||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1437 CGAGTGTCCGATTTGCTTCAGGGTGTTCAAATCAGGACAAGCTTTAGGTGGTCACAAGAG 1496
Query 1005 ATCACATTCCATTG 1018
|||||||| |||||
Sbjct 1497 ATCACATTTCATTG 1510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40448414937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5