BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G26600.1

Length=795
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472749 jgi|Araly1|472749|fgenesh2_kg.1__2703__AT1G26600.1         802    0.0  


> Ahg472749 jgi|Araly1|472749|fgenesh2_kg.1__2703__AT1G26600.1
Length=663

 Score =  802 bits (434),  Expect = 0.0
 Identities = 518/557 (93%), Gaps = 11/557 (2%)
 Strand=Plus/Plus

Query  1    ctctcgattttaaacttctt-cttctccaagaccacttctcactttctctctctcgctct  59
            |||||| |||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct  1    CTCTCGTTTTTAAACTT-TTCCTTCTCCAAGAACACTTCTCACTTTCTCTCTCTCGCTCT  59

Query  60   ctctTGGAAACCAAAACAAT---GACGATGACTCACCTGAATCGTCTGATCTTGATCTCT  116
            ||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||
Sbjct  60   CTCTTGGAAACCAAAACAATGACGACGACGACTCACCTGAATCGTCTGATCTTGATCTCT  119

Query  117  CTTCTCTTCGTCTCTTTACTTCTCAAATCCTCCACCGCTTCTTCAACCGTCGTCGACGAA  176
            ||| | || |||| ||| ||||||||| |||||||||||||||||||||||||   ||||
Sbjct  120  CTTTTTTTAGTCTTTTTCCTTCTCAAAACCTCCACCGCTTCTTCAACCGTCGT---CGAA  176

Query  177  GGAAACAGAACATCAAGAAACTTCCGTTACCGAACGCACCGATTCGTTCCGAGGTTTAAC  236
            ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||
Sbjct  177  GGAAACAGAACATCAAGAAACTTCCGTTACCGAACTCACCGATTCGTCCCGAGGGTTAAC  236

Query  237  CACCACCCTTACCACGTGACTCCTCACCGTTCGTGTGATTCCTTCATTCGTCCTTACGCG  296
            ||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct  237  CACCACCCTTACCACGTGACTCCTCACCGTTCGTGCGATTCCTTCACTCGTCCGTACGCG  296

Query  297  CGTTCTATGTGCATTGAGCTTCAGAGAATCCACCGTAGCAGTCGGAAGCAGCCACTTCTT  356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CGTTCTATGTGCATTGAGCTTCAGAGAATCCACCGTAGCAGTCGGAAGCAGCCACTTCTT  356

Query  357  TCTCCTCCTCCTCCGGAGATTGATCCAAGGTACGGCGTCGACAAAAGACTCGTCCCCTCT  416
            |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct  357  TCTCCTCCTCCTCCAGAGATTGACCCAAGGTACGGTGTCGACAAAAGACTCGTCCCCTCT  416

Query  417  GGTCCAAACCCGCTTCACAACTAAAACCATATCCTCAAGTTTCTATACATACATA-TATA  475
            |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||
Sbjct  417  GGTCCAAACCCGCTTCACAACTAAAACCCTATCCTCAAGTTTCTATATATACATAATATA  476

Query  476  CAGAAACATTTGTCACATATTTTCTAATTTAACTCGTTTCTCGGA-TTTGTTCGAGAGAG  534
            |||| |||||||||||| ||||||||||| ||| | ||||| ||  ||| ||||||||||
Sbjct  477  CAGAGACATTTGTCACACATTTTCTAATT-AACACATTTCTTGGCGTTTCTTCGAGAGAG  535

Query  535  ATTTGTGTACTTTATAG  551
            ||||||||| |||||||
Sbjct  536  ATTTGTGTATTTTATAG  552


 Score =  111 bits (60),  Expect = 6e-24
 Identities = 72/78 (92%), Gaps = 0/78 (0%)
 Strand=Plus/Plus

Query  583  GTTAGTTCTTCTTGGTCTTCTTTGCGGAAATTTCTTATTTCTACTTTCTTGATCTTGTAA  642
            |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  553  GTTATTTCTTCTTGGTCTTCTTTGCGGAAATTTCTTATTTCTACTCTCTTGATCTTGTAA  612

Query  643  TGGAGTCTTGCGTTATGG  660
            | || || | ||||||||
Sbjct  613  TTGAATCCTACGTTATGG  630



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29354646090


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5