BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26610.1
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472748 jgi|Araly1|472748|fgenesh2_kg.1__2702__AT1G26610.1 2752 0.0
> Ahg472748 jgi|Araly1|472748|fgenesh2_kg.1__2702__AT1G26610.1
Length=1780
Score = 2752 bits (1490), Expect = 0.0
Identities = 1701/1800 (95%), Gaps = 26/1800 (1%)
Strand=Plus/Plus
Query 60 TTTTTATTTTATATCTTTCATTCGC-AACCCCAAAAAGAAAGTAAATCTGCTAACTTTAG 118
|||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTTATTTTATTTCTTTCATTC-CAAACCCCAAAAAGAAAGTAAATCTGCTAACTTTAG 59
Query 119 ATATTGAGGAAATTTCAAAGTCAGTTTTATTTGTTTCCTGTTTTTGTGTTCTCTTTGCCT 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATATTGAGGAAATTTCAAAGTCAGTTTTATTTGTTTCCTGTTTTTGTGTTCTCTTTGCCT 119
Query 179 TGATGGTAGGATCTGTAGTTAACAAGACTAGTGTTACATCTCCAAACTCTGATCGCTGGA 238
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 TGATGGTAGGATCTGTACTTAACAAGACTACTGTTACATCTCCAAACTCTGATCGCTGGG 179
Query 239 AAAGTATCAAGCTTTCTGCTTGATTCTCTTTCTTAGCATCTG-TCAAGCTTTCTTTGAAG 297
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 180 AAAGTATCAAGCTTTCTGCTTGATTCTCTTTCTTAGCATCTGAT-AAGCTTTCTTTGAAG 238
Query 298 ATAAATTTGAGATGGAGCAGTTCAAAGAGAGGAAGTTTGTTTGTAAGTTCTGTAGCAAGA 357
|||| ||| ||||||||||||| |||||||||| |||||| |||||||||||||||||||
Sbjct 239 ATAATTTTCAGATGGAGCAGTTGAAAGAGAGGAGGTTTGTGTGTAAGTTCTGTAGCAAGA 298
Query 358 GGTTTCCTTGTGGGAAATCACTTGGAGGTCACATCAGAACTCACATGAATGAGAATTCAG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GGTTTCCTTGTGGGAAATCACTTGGAGGTCACATCAGAACTCACATGAATGAGAATTCAG 358
Query 418 CTGATTCAGATGAAGATGAGGCTGATAAGCTCAAGATGATTGATGAAAATGGTGGTCAAT 477
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 359 CTGATTCAGATGAGGATGAGGCTAATAAGCTCAAGATGATTGATGAAAATGGTGGTCAGT 418
Query 478 CTAGTTATGGTCTGAGAGAGAATCCTAAAAAGAACAAGAGGTTTGTGGATCACAGACAGA 537
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 CTAGTTATGGTCTCAGAGAGAATCCTAAAAAGAATAAGAGGTTTGTGGATCACAGACAGA 478
Query 538 TTATGGCTCTGAAAcagcagcagcagcagcaACAACTTCAAGAGCTGCGTCGTTGCAGAG 597
| |||||| ||||||||||||||||||| | ||||| ||| |||||| | |||||||||
Sbjct 479 TGATGGCTTTGAAACAGCAGCAGCAGCA--A-CAACTACAACAGCTGCTTTGTTGCAGAG 535
Query 598 AATGTGGTAAAGGTTTTGTTTCTTCTAAAGCTCTTTGTGGTCACATGGCTTGTCACTCTG 657
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 536 AATGTGGTAAAGGTTTTGTTTCTTCTAAAGCTCTTTGTGGTCACATGGCTAGTCACTCTG 595
Query 658 AGAGAGAGAAGATTGTTATGGATAGTCAATCTGATACTGAGGCTTCTTCCTCTCCTATCA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AGAGAGAGAAGATTGTTATGGATAGTCAATCTGATACTGAGGCTTCTTCCTCTCCTATCA 655
Query 718 GAAGAAGATCCAAGAGAGTTGTTGTGAAACCTCACCACAAAGCTGCTTTTGTAGTTGGTG 777
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 656 GAAGAAGATCCAAGAGAGTTGTTGTGAAACATCACCACAAAGATGCTTTTGTAGTTGGTG 715
Query 778 GTAATGGTATTATGAATCAATCTATTTCAGCTTCTTCTGATGCTTCTGAGATTGAGCCTG 837
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 716 GTAATGGTATCATGAATCAATCGATTTCAGCATCTTCTGATGCTTCTGAGATTGAGCCTG 775
Query 838 AACAGGAGGAAATGGCAAGGTCTTTGATGATGCTTTCGAGGGATTCTAGTTTTAAGAAAG 897
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 776 AACAGGAGGAAATGGCAAGGTCTTTGATGATGCTGTCGAGGGATTCTAGTTTCAAGAAAG 835
Query 898 GACATAACTCTTTGGCTGAGTCATCTGACAACAACTCTGTGATTCTTGAGACTAAGTCAT 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AACATAACTCTTTGGCTGAGTCATCTGACAACAACTCTGTGATTCTTGAGACTAAGTCAT 895
Query 958 CTTCAGGTGAGCAGGTTAAGATGTTCAATGTGAAGAATGTTGAAGAGTTA-TGTAAGAAG 1016
||||||| || ||| |||||||||||||||||||||||||||| |||| | |||||||||
Sbjct 896 CTTCAGGAGAACAGCTTAAGATGTTCAATGTGAAGAATGTTGAGGAGT-ACTGTAAGAAG 954
Query 1017 AACAAACTTGTAGTTGATAACCAGATGAG-GTCTGGTGAAGAAAATGGTGATGTTCAT-T 1074
|||||||||||||||||||||||||||| | ||||||| || |||||||| || || |
Sbjct 955 AACAAACTTGTAGTTGATAACCAGATGAAAG-CTGGTGAGGATGATGGTGATATT-ATCT 1012
Query 1075 ATGATTCAGATAATTCTGACTCTGGCTACTTCAGGAATGGACCAAAGAAGTTGGACTCAG 1134
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 ATGATTCAGATAATTCTGATTCTGGCTACTTCAGGAATGGACCAAAGAAGTTGGACTCAG 1072
Query 1135 ATGTTTCTGTTGATGGGTTCTTTAGGAACAAAACAATAATGGGATCTGGATCCGGATTCA 1194
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1073 ATGTTTCTGTTGATGGGTTCTTTAGGAACAAAGCTGTAATGGGATCTGGATCCGGATTCA 1132
Query 1195 ACAGCTCCCCAACAAAACAAGATAGGGACATGAACAGATTCAGGAAGGAATGGTATAAGG 1254
|||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||
Sbjct 1133 ACAGCTCCCCAACAAAACAAAATATGAACATGAACAGATTCAAGAAGGAATGGTATAAGG 1192
Query 1255 AAGGAGGGTCAGGGTCAGGATCAGGATCAGGTCGTTCTTCTACAAAGTATGATCTGAGGA 1314
||||||||||||||||||||||||| || | | | ||||||||||||||||||||||||
Sbjct 1193 AAGGAGGGTCAGGGTCAGGATCAGG-TC-G-T--T-CTTCTACAAAGTATGATCTGAGGA 1246
Query 1315 AAAGCAAAAGAGGTTTTCCTTCTCATGGTCGTAAGAAAATCAAGTATGAGTTCACTGAAT 1374
| ||||||||||| ||||||||| | ||||| |||||||||||||| |||||||||||||
Sbjct 1247 ATAGCAAAAGAGGGTTTCCTTCTTACGGTCGAAAGAAAATCAAGTACGAGTTCACTGAAT 1306
Query 1375 CTGTCTATGACAGTGGTGAGCATAGCTTGGAAACTGACTCTTGTGCGGACACAAACAGAA 1434
|||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| |||
Sbjct 1307 CTGTCTATGATAGTGGTGAGCATAGCTTGGAAACTGATTCTTGCGCGGACACAAACCGAA 1366
Query 1435 CTATCAAGATTCATAGTAAGTCTC-CAATGGTTAAGAAAGCAAACGGTGCAAAGAAGAAA 1493
||||||||| |||||||||||| | |||||||||| ||||||| ||||||||| |||||
Sbjct 1367 CTATCAAGACTCATAGTAAGTC-CGCAATGGTTAATAAAGCAAGTGGTGCAAAGGAGAAA 1425
Query 1494 AGCAAAGGTCACGAGTGTCCGATTTGCTTCAGGGTGTTCAAATCAGGACAAGCTTTAGGA 1553
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 AACAAAGGTCACGAGTGTCCGATTTGCTTCAGGGTGTTCAAATCAGGACAAGCTTTAGGT 1485
Query 1554 GGTCACAAGAGATCACATTTCATTGGGAATCAAGAACACAGGACTTTGGTGATTCAACAT 1613
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 GGTCACAAGAGATCACATTTCATTGGGAATCAAGAACACAGGACTTTGGTGATTCAACAC 1545
Query 1614 CAAGTAGCTCATGAGATGCATACACTCATCGATCTCAATCTTCCTGCTCCTATTGATGAA 1673
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 CAAGTATCTCATGAGATGCATACACTCATCGATCTCAATCTTCCTGCTCCTATTGATGAA 1605
Query 1674 TGATCTTACTAAAACCGAAACCGCGGTTTTCTTCTCTTTATTGTTTCCTTTCTGTTTATT 1733
|||| ||| ||| ||||||||| | || | |||||||||||||||||||||||||||||
Sbjct 1606 TGAT-TTAGTAA--CCGAAACCGTGATTGTGTTCTCTTTATTGTTTCCTTTCTGTTTATT 1662
Query 1734 GATTCTTTTGCTTCAGATTCAAGAATGCTTTTGGTTTGCAAGGCAAATCAAAGTCATCTT 1793
|||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 1663 GATTCTTTTGCTTCAGATTCAAGAATGCTTTTGGTTTGGAAGGTAAATCAAA-TCATCTT 1721
Query 1794 TTATTTGTTCATAATCATATAAAAGCTTGGTGCTTTTGTGGCAGAGTTCAATGATACTTC 1853
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1722 TTATTTGTTCATAATCATATAAA-GCTTGGTGCTTTTGTGGCAGAGTTCAATGATAATTC 1780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628967860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5