BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26620.1
Length=2977
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912387 jgi|Araly1|912387|Al_scaffold_0001_2641 3916 0.0
Ahg908513 jgi|Araly1|908513|Al_scaffold_0002_1594 516 4e-145
> Ahg912387 jgi|Araly1|912387|Al_scaffold_0001_2641
Length=2586
Score = 3916 bits (2120), Expect = 0.0
Identities = 2449/2606 (94%), Gaps = 30/2606 (1%)
Strand=Plus/Plus
Query 374 ATGAGAGATGCAGCGGATTCGTCATCATACTCTGGATACGAGAAAGATTTCATGAAACAT 433
||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGAGAGATGCGGCGGATTCATCATCATACTCAGGATACGAGAAAGATTTCATGAAACAA 60
Query 434 ACAATGCTTGAGCACGAAGCTGTTTTCAAGAATCAGGTGCATGAGCTTCACCGTTTGTAT 493
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 61 ACAATGCTTGAGCACGAAGCCGTTTTTAAGAATCAGGTGCATGAGCTTCACCGTTTGTAT 120
Query 494 AGAGTACAGAAGAATTTGGTTGAGGAAGTAAAAGGAAAGAACTTGAATGAAGTTATGAAC 553
||||||||| ||||||||| || ||||||||||| ||| ||||||||||| |||||||
Sbjct 121 AGAGTACAGCGGAATTTGGTCGATGAAGTAAAAGGGCAGAGCTTGAATGAAGATATGAAC 180
Query 554 GTGAGTGATCATCATACATCTGAAAATGAAAGTAAGAGGAAGTTACATGGGTTTCTTTTA 613
||||||| |||||||||| ||||||| | ||||||||||||||| ||| ||||| |||
Sbjct 181 GTGAGTG---ATCATACATCGGAAAATGCAGGTAAGAGGAAGTTACCTGGATTTCTCTTA 237
Query 614 CCAAACTCAACATGTGGAGAAGGGAGCAGCACACAAGCGTCCAACGGTCGTTTGCAAAAT 673
||||||||||||| ||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct 238 CCAAACTCAACATATGGAGAAGGAAGCAGCACACAAGCTTGCAACGGTCGTTTGCAAAAT 297
Query 674 GGTGGTAGTTCAAATGGGGACGCGTCCGAGGGTAGAGATGTGAAGGGGAGGAGAAGAATG 733
| || | || |||| ||||| ||||||||| |||| ||||||||||||
Sbjct 298 -G-GG--G-----AT------GCGTTCGAGGTTAGAGATGTCAAGGTCAGGAGAAGAATG 342
Query 734 ATTGATCTTCAACTTCCAGCCGATGAGTATCTTGATACTGATGAAACTACTAACACCGGT 793
|||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 343 ATTGATCTTCAACTCCCAGCCGATGAGTATCTTGATACTGATGAAACTAGTGATACCGGT 402
Query 794 GAGAATACAAGCTTCCCTCCATACAACCAGTTAAAATCAGGAAGAGGGGATGCTTCTCAT 853
||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct 403 GAGAATACAAGCTTCCCTCCATACAACCAGTCAACATCAGGAAGATGGGATGCTTCTCAT 462
Query 854 CGGAGCTATCCTTCAGGATCTTGCTTGGATGTGAAGAACTCAAATGGCTTAGCTGACTTG 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 CGGAGCTATCCTTCAGGATCTTGCTTGGATGTGAAGAACTCAAATGGCTTAGCTGACTTG 522
Query 914 AATGAGCCACTCAAAGGGCAAGATTCAGAACCTGCTGCTCTGTCTAGGGATATGTATTCT 973
||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 523 AATGAGCCACTCAAATGGCAAGATTCAGAACCTGTTGCTCTGTCAAGGGATATGTATTCT 582
Query 974 CATTATGGGAGAAACAATGCTCATGTTCAAGGTCAGTGGTTGGAGAAAAATCGAACTCAA 1033
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 583 CATTATGGAAGAAACAATGCTCATGTTCAAAGTCAGTGGTTGGAGAAAAATCGAAGTCAA 642
Query 1034 AATGGATGGATGGTCCTTGAAGCAGGGCAAGATAGGAGCACTCAGAGAGATCAGGTGCAT 1093
|||||||||||||||||| |||||||||| |||||||||||||||| ||||||| |||||
Sbjct 643 AATGGATGGATGGTCCTTCAAGCAGGGCATGATAGGAGCACTCAGATAGATCAGCTGCAT 702
Query 1094 CTGCCTTCTCATTCAGGACAAGTACTTTCTAACAATGCATTTCAACCTCAGAGCTATCCT 1153
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 703 CTGCCTTCCCATTCAGGACAAGTACTTTCTAACAATGCTTTTCAACCTCAGAGCTATCTT 762
Query 1154 ACAACTGATCACAGCAAGGTCAAATTTTCCGGGGAAAGAGCACATCGTGAGCTAGAAGTT 1213
||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 763 ACAACTGATCATAGCAAGGTCAAATTCTCCGGGGAAAGAGCATATCGTGAGCTAGAAGTT 822
Query 1214 CGCTCAAAGACTCCTCAAGTTTCTTATGATAGCTACGTTGAATCAAGTGTGGCATCTACT 1273
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| | |
Sbjct 823 CGCTCAAAGACTCCTCACTTTTCTTATGATAGCTACGTGGAATCAAGTGTGGCATCAAAT 882
Query 1274 GCTCCAAGATCAGTCAATGACTACCGCCCTGAATTTTTCAAACCATTGACCCATTGGTCT 1333
|||||||||| | |||| |||||||||||||| ||| ||| ||||| |||||||||||||
Sbjct 883 GCTCCAAGATTACTCAACGACTACCGCCCTGACTTTGTCAGACCATGGACCCATTGGTCT 942
Query 1334 TCATCC-GGGAGGAC---TATGACCAGCTCAAATCAGAAATCTTATCCAGTTCAAACGAA 1389
|||||| ||||| || ||||| ||||||| ||||||||||||| ||||||||||||||
Sbjct 943 TCATCCTGGGAG-ACCCCTATGAGCAGCTCACATCAGAAATCTTACCCAGTTCAAACGAA 1001
Query 1390 TCCCTACATGAATTTTGACACACATGCAAGACCAGATTTGAGTTTTGAGAATAGAAGCCA 1449
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1002 TCCCTTCATGAATTTTGACACACATGCAAGACCAGATTCGAGTTTTGAGAATAGAAGCCA 1061
Query 1450 TGTCTCTAATGGGCTTTATCAAGGATTCTCTTCAGGGTCAAAGCAGTCTTTCTATAATTT 1509
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1062 TGTCTCTAATGGGCTTTATCAAGGATTCTCTTCAGGGTCAAAGCAGTCATTCTTTAATTT 1121
Query 1510 CCCATCAACCGGCTTTAAACCAAATGCTTCCATAGGCGAGGTAGCGAACAGCCACAGTTT 1569
|||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct 1122 CCCATCAACCGGCTTTAAACCAAATGCTTCTTTAGGCGAGGTAGCGAATAGCCAGAGTTT 1181
Query 1570 TGTAAATCTTCAAGGGCCAAAAAGGCAGGAATGCTCAGCTGGGTTGCCCTGGCTAAAACC 1629
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1182 TGTAAGTCTTCAAGGGCCAAAAAAGCAGGAATGCTCAGCTGGGTTGCCCTGGCTAAAACC 1241
Query 1630 TCAGCCCCCTTACAGAAGTGGAATGTCCAATGGCTTCTTTGATCTGAATGCTTCGACAAA 1689
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1242 GAAGCCCCCTTACAAAAGTGGAATGTCCAATGGCTTCTTTGATTTGAATGCTTCGACAAA 1301
Query 1690 TCAATTCATGGATGGAACTGACGCTGGGGACGACTTGACTTGTGCTTCTGTTCTGAAGGG 1749
|||||||||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||
Sbjct 1302 TCAATTCATGGATGGAACTGACGCAGGGGACGACCTGACTTGCGCTTCTGCTCTGAAGGG 1361
Query 1750 TTTGCGATCTGCTTCATACTCTAATAATGCAAACATGGGAAGAGTTGAAACGAACAACTC 1809
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1362 TTTGCGATCTGCTTCATACTCTAATAATGCAAACATGGGAAGAGTTGAAATGAGCAACTC 1421
Query 1810 TCAGAGTAGTACTAAAATTATTGGGAGCCCAATCTTTGGGAAGCAATTTGTTTGCAAGCA 1869
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1422 TCAGAGTAGTACAAAAATTATTGGGGGCCCAATCTTTGGGAAGCAATTTGTTTGCAAGCA 1481
Query 1870 GGAGCGTACGCCCCTTATCCCTCATTCCTTATGGATTGCTAATCAACACAAGGAAGTAAA 1929
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1482 GGAGCGTACGCCCCTTATCTCTCATTCCTTATGGAATGCTAATCAACACAAGGAAGTAAA 1541
Query 1930 TCACTTGGTAAAGCGAGACCTTGATATCAACCTGCCATGTGATGCCTCGGTTTCTGTTGA 1989
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1542 TCACTTGGTAAAGCGAGACCTCGATATCAACTTGCCATGTGATGCCTCGGTTTCTGTTGA 1601
Query 1990 CCAGCATGGTGCTAAAGCCTACTATGTAGACAAGAAAGAAGGGAAAAAAGCTGCCAACTT 2049
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1602 CCAGCATGGTGCTAAAGCCTATTATGTAGACAAGAAAGAAGGGAAAAAAGCTGCCAACTT 1661
Query 2050 CAGACACTACATTGATCTGAATTCATGTGCTAATGAGGATGACGAAGATTCCGGCTTCCT 2109
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1662 CAGACACTACATTGATCTGAATTCATGTGCTAATGAGGATGATGAAGATTCCGGCTTGCT 1721
Query 2110 TTCCAGTCTGAGTGTGAAAACAAAAGCAAGAACTTGGATAGATTTGGAAGCTCCCCCTAC 2169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 TTCCAGTCTGAGTGTGAAAACAAAAGCAAGAACTTGGATAGATTTGGAAGCTCCCCCTAC 1781
Query 2170 TCTCGAGAGTGAAGAAGAAGGAGATAACTCACAGGACAAAACAAATGAAGAAACTT-GGA 2228
|||||||||||||||||||||||| ||| ||||| |||||||||||| |||||| ||
Sbjct 1782 CCTCGAGAGTGAAGAAGAAGGAGATGGCTCGCAGGAGAAAACAAATGAAAAAACTTTGG- 1840
Query 2229 GAATGATGCAAGGCCAAGACGGAAACTCTATGAATGAACTCATCAAGGTAGCAGCAGAAG 2288
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 GATTGATGCAAGGCCAAGACGGAAACTCTATGAATGAACTCATCAAGGTAGCAGCAGAAG 1900
Query 2289 CAATAGTTGCCATCTCAATGGCTGGTCACCAACGCCATCCTGATGACGCAGCTTCCTCTT 2348
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1901 CATTAGTTGCCATCTCAATGTCTGGTCACCAACGCCATCCTGATGACGCAGCTTCCTCTT 1960
Query 2349 CAACTGATGCGGCTTCAAAAAGCCCGCTCTCTTGGTTTGCAGAAATAATCACTTCTTGCG 2408
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961 CGACTGATGCGGCTGCAAAAAGCCCGCTCTCTTGGTTTGCAGAAATAATCACTTCTTGCG 2020
Query 2409 GTGATGAGTTAGAAAGAAAGATTGATGGTTCTCCAGAAGCCACAGACTTTGAAGGTAACA 2468
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||
Sbjct 2021 GTGATGAGTTAGAAAGAAAGGTTGATGGTTCTCCAGAAGCCACAGACTTTGAGGGTTACA 2080
Query 2469 GGGAAGACTATTCTTCTGGGGAGATTGATTACTTTGAAGCCATGACCCTGAATATACAGG 2528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2081 GGGAAGACTATTCTTCTGGGGAGATTGATTACTTTGAAGCCATGACCCTGAATATACAGC 2140
Query 2529 AGACAAAGGAGGAAGACTACATGCCAGAGCCATTAGTCCCAGAGAATCTGAAATTCGAAG 2588
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2141 AGACAAAGGAAGAAGACTACATGCCAGAGCCATTAGTCCCTGAGAATCTGAAATTCGAAG 2200
Query 2589 ATACATGTATTAACAAGCCAAGAAGAGGACAAGCAAGACGAGGAAGACCAAAGCGGGATT 2648
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2201 ATACAGGTATTAACAAGCCAAGAAGAGGACAAGCAAGACGAGGAAGACCAAAGCGGGATT 2260
Query 2649 TCCAAAGGGATACTCTACCTGGTCTCTCTTCTCTGTCGAGGCATGAAGTCACTGAAGATA 2708
|||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2261 TCCAGAGGGATATTCTCCCTGGACTCTCTTCTCTGTCGAGGCATGAAGTCACTGAAGATA 2320
Query 2709 TCCAAATGTTTGGGGGACTGATGAAAACCGGAGACTACACTTGGAGTTCTGGATTGGCTG 2768
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2321 TCCAAATGTTTGGGGGGCTTATGAAAACCGGAGACTACACTTGGAGTTCTGGATTGGCTG 2380
Query 2769 TTCGACGGAACTCAAAAAGAAAACGAAATG-TCACTAACATAAACCAAGCTCCATTATGC 2827
|||||||||||||||||||||||||| || ||||||||| || |||||||||| |||||
Sbjct 2381 TTCGACGGAACTCAAAAAGAAAACGAC-TGGTCACTAACACAAGCCAAGCTCCAGTATGC 2439
Query 2828 CCGTCAATGGCGCAGCCAATGAATGAGAGCGTATCAGTGGGAGGACTTGAAGACAGTAAG 2887
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2440 CCGTCAATGGCGCAGCCAATGAATGAGAGCGTATCAGTGGGGGGACTTGAAGACAGTAAG 2499
Query 2888 CTCTCAGGATGGGGACAAGCAACAAGAAGACCGAGGAGACAAAGGTGCCCTCCTGCAGGT 2947
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2500 CTCACAGGATGGGGACAAGCAACAAGAAGACCGAGGAGACAAAGGTGCCCTCCTGCAGGT 2559
Query 2948 AGTAATCCCCCAACCGTGATCTTAAC 2973
| | |||| ||||||||||||||||
Sbjct 2560 A--A-TCCCGCAACCGTGATCTTAAC 2582
> Ahg908513 jgi|Araly1|908513|Al_scaffold_0002_1594
Length=2718
Score = 516 bits (279), Expect = 4e-145
Identities = 1115/1492 (75%), Gaps = 164/1492 (11%)
Strand=Plus/Plus
Query 1565 AGTTTTGTAAATCTTCAAGGGCCAAAAAGGCAGGAATGCTCAGCTGGGTTGCCCTGGCTA 1624
||| ||| ||| |||||||| ||||||| |||||| ||||| ||||||||||||||| ||
Sbjct 1312 AGTCTTGAAAACCTTCAAGGACCAAAAAAGCAGGAGTGCTCTGCTGGGTTGCCCTGGATA 1371
Query 1625 AAACCTCA-GCCCCCTT-ACAGAAGTGGAATGTCCAATGGCTTCTTT-GATCTGAATGCT 1681
|||||| | | |||||| ||| || |||||| |||||||| ||| ||| ||||||||
Sbjct 1372 AAACCT-ATG-CCCCTTAACAAAAATGGAATAACCAATGGC-GGTTTGGATTTGAATGCT 1428
Query 1682 TC-GAC-AA--ATCAATTCATGGATGGAACTGACGCTGGG-GACGA-CTTGACTTGTGCT 1735
|| | | || |||||||||||||||||| ||| |||| ||| | || | | || |
Sbjct 1429 TCTG-CAAATCATCAATTCATGGATGGAAGTGA-TATGGGTGAC-AGCTCAAATAATG-T 1484
Query 1736 -TCTGTTCTGAAGGGTTTGCGATCTGCTTCATACTCTAATAATGCAAACATGGGAAGA-G 1793
||| || ||| |||||| | |||| ||||| |||||| | || ||| || | | | |
Sbjct 1485 ATCTCCTCAGAATGGTTTGAGGTCTGTTTCATGTTCTAATGACGCCAACTTGAG-ACATG 1543
Query 1794 TTGAAACGAACAACTCTCAGAGTAGTACTAAA-ATTATTGGGAGCCCAATCTTTGGGAAG 1852
|||||| | ||| || ||||| |||| ||| ||| |||| ||| |||| | ||||
Sbjct 1544 TTGAAATGGCCAATTCACAGAGCAGTA-GAAAGATTCTTGGTTTCCCTATCTCTCAGAAG 1602
Query 1853 CAATT-TGTTTGCAAGCAGGAGCGTACGC--CCCTTATC-CCTCATTCCT-TATGGAT-T 1906
| ||| | ||||| | |||||| || | |||||||| | || || || | || || |
Sbjct 1603 C-ATTCTATTTGC--G-AGGAGC--ACCCTTCCCTTATCACTTC-TT-CTGTGTGTATCT 1654
Query 1907 GCTAATCAACACAAGGAAGTAAATCA-CTTGGTAAAGCGAGACCTTGATATCAACCTGCC 1965
||||| ||| |||| ||||||| || |||||| | | || |||| ||||| ||||||||
Sbjct 1655 -CTAATGAACCCAAGAAAGTAAA-CACCTTGGTGAGGAGAAACCTCGATATTAACCTGCC 1712
Query 1966 ATGTGATGCCTCGGTTTCTGTTGACCAGCATGGTGCTAAAGCCTACTATGTAGACAAGAA 2025
|||||| ||||||||||| ||| |||| || | | | | || |||||| |
Sbjct 1713 ATGTGAAGCCTCGGTTTC---TGA--AGCA--GT--T---G--T--TCTG--GACAAGGA 1754
Query 2026 AGAAGGGAAAAAAGCTGCCAACT-TCAGACA-CTACATTGATC-TGAA-TTCATGTGCTA 2081
|||||| |||||||||||| ||| ||| || | ||||||| | |||| ||| |||||||
Sbjct 1755 AGAAGGTAAAAAAGCTGCC-ACTCACAGGCAGC-ACATTGA-CTTGAATTTC-TGTGCTA 1810
Query 2082 ATGAGGATGACGAAGATTCCGGCTTCCT-TTCCAGTCTGAGTGTGAAAACAAAAGCAAGA 2140
|||||| |||||||| ||||| | ||| | || || ||| ||||||||||||
Sbjct 1811 GCGAGGAT---GAAGATTCTGGCTT-GTGTTCTAATCCAAGAGTGGAAACAAAAGCAACT 1866
Query 2141 ACTTGGATAGATTTGGAAGCTCCCCCTACTCTCGAGAGTGAAGAAGAAG--GAGATAA-C 2197
|||| ||||||||||||||||| ||| ||||| |||| |||||| |||| | || ||
Sbjct 1867 ACTTTGATAGATTTGGAAGCTCTCCCGACTCTTGAGAATGAAGATGAAGTAGCGA-AATG 1925
Query 2198 TCACAGGACAAAACAAATGAAGAAACTTGGA-GAAT-GATGCAAGGCCAAGAC-GGAAAC 2254
|| || | || | | ||| ||| | || | | | || | |||| ||| | ||| |
Sbjct 1926 TC-CA-GTGAACAGAGATGCAGACA-TTTCAGGGTTAGA-GAAAGGTGAAG-CTGGAGAT 1980
Query 2255 TCTATGAATGAACTCATCAAGGTAGCAGCAGAAGCAATAGTTGCCATCTCAATGGCTGGT 2314
||| || |||||||||| |||| |||||||||||| || || | |||||| || || |
Sbjct 1981 TCTGTGGATGAACTCATTAAGGCAGCAGCAGAAGCTATCGTCACTATCTCACTGTCT--T 2038
Query 2315 CACCAACGCC---ATCCTGATGACGCAGCTTCCTCTTCAACTGATGCGGCTT--CAAAAA 2369
|||| ||| || ||||||| || ||||||||||| |||||||| | || ||| |
Sbjct 2039 -ACCATTGCCGGAATACTGATGAAGCTGCTTCCTCTTCGACTGATGCAG-TTGCCAAGGA 2096
Query 2370 GCCCGCTCTCTTGGTTTGCAGAA-ATAATCA-CTTCTTGCGGTGATGAGTTAGA-AAGAA 2426
||||||||||||||||| ||| | ||| | ||||||| || |||| ||||| || ||
Sbjct 2097 -CCCGCTCTCTTGGTTTG-TGAACACAAT-AGCTTCTTGTGGCAATGATTTAGAGAA-AA 2152
Query 2427 AGATTGATGGTTCTCCAGAAGCCACAGACTT-TGAAGG-TAACAGGGAAGACTATTCTTC 2484
| ||||||| || | ||||||| ||| || |||||| | || ||||| ||||||||
Sbjct 2153 AAATTGATGCTTGTTTGGAAGCCAGAGA-TTCTGAAGGCTGTCA-TGAAGAATATTCTTC 2210
Query 2485 TGGGGAGATTGATTACTTTGAAG-CCATGACCCTGAA-TATACAGGAGA-CAAAGGAGGA 2541
| ||| |||||||||| | || | ||||| ||||| | ||| ||| |||| || ||
Sbjct 2211 AGATGAGTTTGATTACTTCG-AGACAATGACTCTGAACT-TACCCCAGACCAAA-GAAGA 2267
Query 2542 AGACTACATGCCAGAGCCATTAGTCCCAGAGA-ATCTGAAATTCGA----A--GATAC-A 2593
||||||||||||| |||| ||| | || | || |||||||||| || | | | |
Sbjct 2268 AGACTACATGCCAAAGCCTTTAATTCC-GGGATATCTGAAATTTGATGGGACGGGTTCTG 2326
Query 2594 T--GTAT--TAAC--A-A-GCCAAGAAGAGGACAAGCAAGACGAGGAAGACCAAAGCGGG 2645
| |||| ||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 2327 TGGGTATCACAACTAATAGGCCAAGAAGAGGACAAGCAAGACGAGGAAGACCAAAGCGGG 2386
Query 2646 ATTTCCAAAGGGATACTCTACCTGGTCTCT-CTTCTCTGTCGAGGCAT-GAAGTCACTGA 2703
||||||||||||||| ||| ||||| || | |||||||||| |||| | ||||| || ||
Sbjct 2387 ATTTCCAAAGGGATATTCTCCCTGGGCT-TGCTTCTCTGTCTAGGC-TCGAAGTAACCGA 2444
Query 2704 AGATATCCAAATGTTTGGGGGACTGATGAAAACCGGAGACTACACTTGGAGTTCTGGATT 2763
|||| | || ||||||| |||||| |||||| || || ||||| ||||| || ||| |
Sbjct 2445 AGATCTTCAGATGTTTGAGGGACTTATGAAAGCCACAGGCTACAATTGGAACTCAGGAGT 2504
Query 2764 GGCTGTTCGACGGAACTCAAA---A--A-GAAAACGAAATG-TCA-CTAACATAAACCA- 2814
||| ||| ||| |||||| | | |||||||| || ||| | ||||| || |
Sbjct 2505 GGCC---CGAAGGAGCTCAAACCGAGGAAGAAAACGAC-TGGTCAGC-AACATTGAC-AG 2558
Query 2815 AGCTCCA-TTATGCCCGTCAATGGCGCAGCCAATGAATGAGA---GCGTATCAG-TGG-G 2868
|||||| || ||| |||| | |||||||||||||| | | | ||| || ||| |
Sbjct 2559 AGCTCCGGTT-TGCTCGTCTTTTCCGCAGCCAATGAATAACAATAGTGTA-CAAATGGTG 2616
Query 2869 AGGACTTGAAGACAGTAAGCTCT--CAGGATGGGGACAA-GCAACAAGAAGACCGAGGAG 2925
||||| ||||| || | || || ||||||||||| || ||||| ||||| || ||| |
Sbjct 2617 -GGACTGGAAGATAGGA-GC-CTTACAGGATGGGGA-AATGCAACCAGAAGGCCAAGGCG 2672
Query 2926 ACAAAGGTGCCCTCCTGCAGGTAGTAATCCCCCAACCGTGATCTTAACATAA 2977
||||||||||||| ||||||| | |||||||| ||||| |||||||||
Sbjct 2673 ACAAAGGTGCCCT---GCAGGTACT---CCCCCAACAGTGATATTAACATAA 2718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112404312995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5