BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26630.1
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472745 jgi|Araly1|472745|fgenesh2_kg.1__2699__AT1G26630.1 1112 0.0
Ahg926235 jgi|Araly1|926235|scaffold_201796.1 507 7e-143
> Ahg472745 jgi|Araly1|472745|fgenesh2_kg.1__2699__AT1G26630.1
Length=781
Score = 1112 bits (602), Expect = 0.0
Identities = 708/757 (94%), Gaps = 16/757 (2%)
Strand=Plus/Plus
Query 66 ttttttttCCCTT-CTCCCAATCTCA---TCTTC-TC--CGAAAACCTTTCTTC-TCT-C 116
|||||||| |||| ||| |||||||| ||||| || || |||||||||||| ||| |
Sbjct 30 TTTTTTTT-CCTTCCTCTCAATCTCATCTTCTTCTTCATCG-AAACCTTTCTTCTTCTCC 87
Query 117 AAATTTCT-GTGAAAACATGTCTGACGACGAGCACCACTTTGAGGCCAGCGAATCCGGAG 175
||||||| |||||| |||||||||||| || |||||||| ||| ||||||| || ||||
Sbjct 88 CAATTTCTGGTGAAATCATGTCTGACGAAGAACACCACTTCGAGTCCAGCGATTCTGGAG 147
Query 176 CTTCCAAGACCTATCCTCAATC-AGCCGGTAACATCCGTAAAGGTGGTCACATCGTCATC 234
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 148 CTTCCAAGACCTATCCTCAA-CAAGCCGGTAACATCCGTAAAGGTGGTCACATCGTCATC 206
Query 235 AAAAACCGTCCCTGCAAGGTTGTTGAGGTTTCGACTTCCAAAACTGGCAAGCACGGTCAC 294
|||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 207 AAAACCCGTCCCTGCAAGGTTGTTGAAGTTTCGACTTCAAAAACTGGCAAGCACGGTCAC 266
Query 295 GCCAAATGTCACTTTGTTGCTATTGATATCTTCACTGCTAAGAAGCTTGAAGATATTGTT 354
|||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||
Sbjct 267 GCCAAATGTCACTTTGTTGCCATTGATATCTTCAATGGTAAGAAGCTTGAAGATATTGTT 326
Query 355 CCATCTTCCCACAATTGTGATGTTCCACATGTGAACCGTGTTGATTACCAGTTGATTGAT 414
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 327 CCATCTTCCCACAATTGTGATATTCCACATGTGAACCGTGTTGATTACCAGTTGATTGAC 386
Query 415 ATCACTGAGGATGGCTTCGTGAGCCTTCTCACTGACAGTGGTGGCACCAAGGATGATCTC 474
||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||||
Sbjct 387 ATCACTGAGGATGGCTTTGTGAGCCTTTTGACTGACAGTGGTGGCACTAAGGATGATCTC 446
Query 475 AAGCTTCCCACCGATGATGGTCTCACCGCCCAGATGAGGCTTGGATTCGATGAGGGAAAG 534
|||||||||||||||| | ||||||||||||||||||| ||||||||| ||||| |||
Sbjct 447 AAGCTTCCCACCGATGCCGCTCTCACCGCCCAGATGAGGAGTGGATTCGAAGAGGGTAAG 506
Query 535 GATATTGTGGTGTCTGTCATGTCTTCCATGGGAGAGGAGCAGATCTGTGCCGTCAAGGAA 594
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 507 GATGTTGTGGTGTCTGTCATGTCTTCCATGGGAGAGGAGCAGATCTGTGCCGTGAAGGAA 566
Query 595 GTTGGTGGTGGCAAGTAAACAAGTATCATTCGATATATTATTACCAGTTTGACAACGGAC 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 567 GTTGGTGGTGGCAAGTAAACAAGTATCATTCGATATATTATTACCAGTTTGACAACAGAC 626
Query 655 GTCAATGTTATAAGAACCAAAAGATGTTTTTCTTTTTCCTAATTTAGACCCTTTGTGTGT 714
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 627 GTCAATGTTATAAGAACAAAAAGATG-TTTTCTTTTTCCTAATTTAGACCCTTTGTGTGT 685
Query 715 GTTTCTTGTTGCAAGACAACCATATCTATTGGTTTTGGATTGTTGGAAAAGTTTGTGTTG 774
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 686 GTTTCTTGTTGCAAGACAACCATATCTATTGGTTTTGGATTGTTG-AAAAGTTTGTGTTG 744
Query 775 AAACATTCAAAGTTTCTTATGAGATGTTATTCTTAAA 811
|||||||||||||||| ||||||||||||||||||||
Sbjct 745 AAACATTCAAAGTTTCCTATGAGATGTTATTCTTAAA 781
> Ahg926235 jgi|Araly1|926235|scaffold_201796.1
Length=517
Score = 507 bits (274), Expect = 7e-143
Identities = 424/495 (86%), Gaps = 15/495 (3%)
Strand=Plus/Plus
Query 113 TCTCAAATTTCTG--TGAAAACATGTCTGACGACGAGCACCACTTTGAGGCCAGCGAATC 170
|||| |||||| | || || |||||| ||||||||||||||||| || ||||||| |
Sbjct 2 TCTC-AATTTC-GATTG-AATCATGTCGGACGACGAGCACCACTTCGAATCCAGCGACGC 58
Query 171 CGGAGCTTCCAAGACCTATCCTCAATC-AGCCGGTAACATCCGTAAAGGTGGTCACATCG 229
||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 59 CGGAGCTTCGAAGACTTATCCTCAA-CAAGCCGGTAACATCCGTAAAGGTGGTCACATCG 117
Query 230 TCATCAAAA-ACCGTCCCTGCAAGGTTGTTGAGGTTTCGACTTCCAAA-ACTGGCAAGCA 287
||||||| || ||||||||||||| |||||||| || ||||| ||| ||||| |||||
Sbjct 118 TCATCAAGGGAC-GTCCCTGCAAGGTGGTTGAGGTATCAACTTC-AAAGACTGGGAAGCA 175
Query 288 CGGTCACGCCAAATGTCACTTTGTTGCTATTGATATCTTCACTGCTAAGAAGCTTGAAGA 347
||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||
Sbjct 176 TGGTCACGCCAAATGTCATTTTGTTGCCATTGATATCTTCACTTCTAAGAAGCTTGAAGA 235
Query 348 TATTGTTCCATCTTCCCACAATTGTGATGTTCCACATGTGAACCGTGTTGATTACCAGTT 407
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 236 TATCGTTCCTTCTTCCCACAATTGTGATGTTCCACATGTGAATCGTGTTGATTACCAGTT 295
Query 408 GATTGATATCACTGAGGATGGCTTCGTGAGCCTTCTCACTGACAGTGGTGGCACCAAGGA 467
|||||||||| |||| |||||||| || || ||||| ||||| | |||| | || |||||
Sbjct 296 GATTGATATCTCTGAAGATGGCTTTGTTAGTCTTCTTACTGATAATGGTAGTACTAAGGA 355
Query 468 TGATCTCAAGCTTCCCACCGATGATGGTCT-CACCGCCCAGATGAGGCTTGGATTCGATG 526
|||||| ||||| || || ||||| | | | | | | ||| | | | |||||| ||||
Sbjct 356 TGATCTGAAGCTGCCAACTGATGAAGCTTTGCTCA-CACAGCTCAAGAATGGATTTGATG 414
Query 527 AGGGAAAGGATATTGTGGTGTCTGTCATGTCTTCCATGGGAGAGGAGCAGATCTGTGC-C 585
|||| |||||||| || ||||||||||||||| | ||||||||||| ||||| ||||| |
Sbjct 415 AGGGCAAGGATATAGTTGTGTCTGTCATGTCTGCAATGGGAGAGGAACAGATGTGTGCTC 474
Query 586 GTCAAGGAAGTTGGT 600
||||||||||||||
Sbjct 475 -TCAAGGAAGTTGGT 488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33243183624
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5