BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26640.1
Length=1367
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472744 jgi|Araly1|472744|fgenesh2_kg.1__2698__AT1G26640.1 1829 0.0
> Ahg472744 jgi|Araly1|472744|fgenesh2_kg.1__2698__AT1G26640.1
Length=1254
Score = 1829 bits (990), Expect = 0.0
Identities = 1181/1268 (93%), Gaps = 34/1268 (3%)
Strand=Plus/Plus
Query 10 GAGAATCTTTCCGGTGAATGGGAAATGGCAAGAAGAAGGATACGAGTACGATGAAGTTga 69
|||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct 1 GAGAATCTTTCCGGCGAA-AGGAAATGGCAAGAAG--GGA-ACGAGTACGATGAAGTTGA 56
Query 70 gttagagcgggagagagagacataccgttgaccactaaagacgagagctttagagagaga 129
||||||||||||| || | || |||||||||||||||||||||||||||| |||||
Sbjct 57 GTTAGAGCGGGAGTGACA-AC--ACCGTTGACCACTAAAGACGAGAGCTTT----AGAGA 109
Query 130 cGCAACAATGGAGCTGAATATTTCCGAGAGTCGAAGCAGATCAATTCGTTGCATTGTGAA 189
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 110 CACAACAATGGAGCTGAATATTTCTGAGAGTCGAAGCAGATCAATTCGTTGCATTGTGAA 169
Query 190 ACTTGGAGGTGCGGCAATTACTTGCAAAAACGAGCTGGAGAAGATTCACGATGAAAATCT 249
||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| |||||
Sbjct 170 ACTTGGAGGTGCGGCGATTACTTGCAAGAACGAGCTAGAGAAGATTCATGATGAGAATCT 229
Query 250 GGAGGTCGTGGCGTGTCAGTTACGTCAAGCTATGTTGGAGGGTTCAGCTCCAAGCAAGGT 309
||||||||||||||||||||||||||| || ||| |||||||||||||| | ||||||||
Sbjct 230 GGAGGTCGTGGCGTGTCAGTTACGTCAGGCGATGATGGAGGGTTCAGCTTCGAGCAAGGT 289
Query 310 TATTGGCATGGATTGGAGCAAGAGACCTGGAAGCTCTGAGATTTCTTGTGATGTGGATGA 369
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TATTGGAATGGATTGGAGCAAGAGACCTGGAAGCTCTGAGATTTCTTGTGATGTGGATGA 349
Query 370 CATAGGGGATCAAAAGTCTTCTGAGTTTAGTAAATTTGTTGTGGTTCATGGCGCTGGTTC 429
| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 350 CTTAGGGGATCAAGAGTCTTCTGAGTTTAGCAAATTTGTTGTGGTTCATGGCGCAGGTTC 409
Query 430 CTTTGGGCACTTTCAGGCCAGTAGATCTGGGGTTCACAAAGGAGGACTTGAGAAACCTAT 489
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 410 CTTTGGGCACTTTCAGGCCAGCAGATCTGGAGTTCACAAAGGAGGACTTGAGAAACCTAT 469
Query 490 TGTCAAAGCTGGTTTCGTTGCTACTCGTATATCTGTGACAAATCTTAATCTTGAAATTGT 549
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 470 TGTCAAAGCTGGTTTCGTTGCTACTCGTATATCTGTCACAAATCTTAATCTTGAAATTGT 529
Query 550 ACGAGCACTAGCCCGAGAGGGCATTCCTACGATAGGCATGTCTCCATTTTCATGTGGTTG 609
||||||||| ||| |||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 530 ACGAGCACTTGCCAGAGAGGGCATTCCTACAATCGGCATGTCTCCATTTTCATGTGGTTG 589
Query 610 GTCAACCTCCAAAAGAGATGTGGCTTCTGCAGATCTAGCAACCGTAGCTAAAACCATAGA 669
|||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||
Sbjct 590 GTCAACCTCCAAAAGAGATGTGGCTTCTGCGGATCTATCAACCGTAGCTAAAACAATAGA 649
Query 670 CTCAGGATTTGTCCCTGTTCTCCATGGAGATGCAGTGCTGGACAATATACTGGGCTGCAC 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CTCAGGATTTGTCCCTGTTCTCCATGGAGATGCAGTGCTGGACAATATACTGGGCTGCAC 709
Query 730 CATATTGAGTGGTGATGTTATCATCCGTCATCTTGCAGATCATTTGAAGCCAGAATATGT 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 710 CATATTGAGTGGTGATGTTATCATCCGTCATCTTGCAGATCATTTGAAGCCAGAATACGT 769
Query 790 TGTCTTTCTCACAGATGTACTAGGTGTCTACGATCGACCACCTTCACCTTCAGAGCCCGA 849
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 770 TGTCTTTCTCACAGATGTACTAGGTGTCTACGATCGACCACCTTCA------GAGCCTGA 823
Query 850 CGCTGTGCTCTTGAAAGAGATCGCTGTTGGAGAAGATGGAAGCTGGAAGGTTGTGAATCC 909
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 CGCTGTACTCTTGAAAGAGATCGCTGTTGGAGAAGATGGAAGCTGGAAGGTTGTGAATCC 883
Query 910 ACTGTTGGAGCACACAGACAAGAAAGTTGACTACTCTGTTGCGGCGCACGATACAACCGG 969
| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 884 AGTGTTGGAGCACACAAACAAGAAAGTTGATTACTCTGTTGCGGCGCACGATACAACCGG 943
Query 970 TGGAATGGAAACGAAGATATCAGAAGCTGCTATGATTGCAAAACTTGGAGTCGATGTCTA 1029
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 944 TGGAATGGAAACAAAGATATCAGAAGCTGCTATGATTGCAAAACTTGGAATCGATGTCTA 1003
Query 1030 CATTGTGAAGGCTGCGACAACTCATTCACAGAGAGCACTAAACGGTGATTTGAGAGATAG 1089
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 1004 CATTGTGAAGGCTGCGACAACTCATTCACAGAGGGCACTCAATGGTGATTTGAGAGATAG 1063
Query 1090 TGTTCCTGAAGATTGGCTTGGTACTATCATCAGATTCTCAAAGTAGAATAATCTCCTGAC 1149
||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1064 TGTTCCTGAAGATTGGCTTGGTACTATCATCAGATTCTCAAAGTAGAC-A-------GAC 1115
Query 1150 AAATACACTAATTCCAGTTCCTCAACAAAGGAAAGCATTGACCTTTTCTTGCTATTACTG 1209
| | ||||||||||||||||||||||| || |||||||||| ||||||||| ||||
Sbjct 1116 A----CGCTAATTCCAGTTCCTCAACAAAG-AA-GCATTGACCTCTTCTTGCTAATACTA 1169
Query 1210 TTTTACCAGACTTTGTGCAAGGAATACAAAATCGTGTAATGTCAAAACCAGTTAAAATGT 1269
|||||||||||||||||| |||| | | || ||||||||||||||| |||||||||||
Sbjct 1170 TTTTACCAGACTTTGTGCGAGGA---CGATATTGTGTAATGTCAAAACAAGTTAAAATGT 1226
Query 1270 CGAATACT 1277
|||||||
Sbjct 1227 TGAATACT 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51160954614
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5