BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26650.1
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472743 jgi|Araly1|472743|fgenesh2_kg.1__2697__AT1G26650.1 1962 0.0
> Ahg472743 jgi|Araly1|472743|fgenesh2_kg.1__2697__AT1G26650.1
Length=1329
Score = 1962 bits (1062), Expect = 0.0
Identities = 1248/1336 (93%), Gaps = 19/1336 (1%)
Strand=Plus/Plus
Query 1 CAAAAGCACGTTCACTTGTGCCACCGACAAAATTGGAAATCTTACATTTTTTGTTTTCTC 60
||||| |||||||||||||||||||||||||| |||||||||| |||||||| |||||||
Sbjct 1 CAAAATCACGTTCACTTGTGCCACCGACAAAACTGGAAATCTTTCATTTTTTTTTTTCTC 60
Query 61 TAATCAAAATTATTGTTGGAACGTAGACAAGATCCGTTCCAAGATTCGTCtttt----tt 116
||| |||||||||||| ||||| | ||||| || ||||||||||| |||| ||
Sbjct 61 TAAACAAAATTATTGTAGGAAC---G---AGATCTGTGCCAAGATTCGTATTTTCCACTT 114
Query 117 ---t--ttCAATTTGATTCCTGGGTTATCTGAAAGATCTTCTCTTTGCTTCGATTTCTAT 171
| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 115 GAATGACCCAATTTGATTCCTGGGTTATATGAAAGATCTTCTCTTTGCTTCGATTTCTAT 174
Query 172 CTCCGCTGCTTGTGAAATCAACCTTTATGGTATGTAATCTCGAACTCAGCTAAAACACAC 231
||||||||||||||||||||| ||| ||||||||||| ||||||| |||| |||| |||
Sbjct 175 CTCCGCTGCTTGTGAAATCAAGATTTTTGGTATGTAATTTCGAACTTAGCTGAAACCCAC 234
Query 232 TTCACTCTC-GGAAACATGGAGACGGAAACGAATCAGGTTTTACGGAAACCGGAGCTAAA 290
||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 235 TTCACTCTCAGAAAAAATGGAGACGGAAACGAATCAGGTTTTGCGGAAACCGGAGCTGAA 294
Query 291 ATCATACAGTCACAAACAATTTCACTCCTCAAATGCGTTAGAGATCTTAAGAGAAACAGT 350
||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 295 ATCATACAGTCACAAGCAATTTCACTCTTCAAATGCATTAGAGATCTTGAGAGAAACAGT 354
Query 351 TCGAATTCTCCGGTACAATCTTGGTGCTTTAATGTTAACTACTGCTGTTTTGATCTGTCC 410
|||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 355 TCGAATCCTCCGGTACAATCTTGGTGCTTTCATGATAACTACTGCTGTTTTGATCTGTCC 414
Query 411 TGTCTCTGCTTTGCTCTTACCAAACTTTTTAGTTGATCAATCATTAGTGAATAAACTCAC 470
||| |||||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 415 TGTATCTGCTTTACTCTTACCAAATTTTTTAGTTGATCAATCACTAGTGAACAAACTCAC 474
Query 471 AGTGAAGCTTCTTTTAGTGGCGAAA-TCAAGTGGTCTTCCTTTGCAGCCTTTTGTCAAAC 529
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 475 AGTGAAGCTTCTTTTAGTGGC-AAAGTCAAGTGGTCTTCCTTTGCAGCCTTTTGTCAAAC 533
Query 530 ATTCTTGTCAGAAATTCGCTGAAACTGCTGTTTCGTCTGCAATGTGTTTCCCTGTGTTTA 589
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 534 ACTCTTGTCAGAAATTCGCTGAAACTGCTGTTTCGTCTGCAATGTGTTTCCCTTTGTTCA 593
Query 590 TCACTGTGTCTCTGTTGTCTAAAGCAGCTGTGGTTTACTCAGTGGATTGTTCTTACTCGA 649
||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 594 TCACTGTGTCTCTATTGTCTAAAGCAGCTGTGATTTACTCAGTGGATTGCACTTACTCGA 653
Query 650 GGGAAGTAGTTGATATAAGCAAGTTCTTGGTTATATTGCAGAAGATATGGAGGAGAGTTG 709
||||| |||||||||| ||||||||||||| || |||||||||||||||||| |||||||
Sbjct 654 GGGAAATAGTTGATATTAGCAAGTTCTTGGGTACATTGCAGAAGATATGGAGAAGAGTTG 713
Query 710 TGTTCACTTACGTTTGGATTTGCATTCTGATTGTTGGTTGCTTCACTTTCTTTTGCGTTC 769
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 714 TGTTCACTTACCTTTGGATTTGCATTCTGATTGTTGGTTGCTTCACTTTCTTCTGCGTTC 773
Query 770 TTCTTGTAGCAATCTGCAGTTCCTTCTCTGTTCTCGGCTTCTCTCCAGATTTCAATGTTT 829
||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 774 TTCTTGTTGCAATCTGCAGTTCATTCTCTGTTCTCGGCTTTTCTCCTGATTTCAATGTTT 833
Query 830 ATGGAGCTATGCTAGTTGGTTTAGCCTTCTCTGTAGTTTTCGCTAACGCGATTATAATCT 889
||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 834 ATGGAGCCATGTTAGTTGGTTTAGCATTCTCTGTAGTTTTCGCTAACGCGATTATAATCT 893
Query 890 GCAACACTGCGATTGTGATCTCGGTTTTGGAAGATGTTTCAGGGTTAGGAGCATTGATGA 949
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GCAACACCGCGATTGTGATCTCGGTTTTGGAAGATGTTTCAGGGTTAGGAGCATTGATGA 953
Query 950 GAGCTAGTGATTTGATCAAAGGGCAGATTCAGGTTGGTTTGTTGATGTTCCTTGGATCAA 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 954 GAGCTAGTGATTTGATCAAAGGGCAGATTCAGGTTGGTTTGTTGATGTTCCTTGGGTCGA 1013
Query 1010 CTTTAGGATTGGCGTTTGTGGAAGGATTGTTTGATCACAGAGTGAAGAAAGTTAGTTATG 1069
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1014 CGTTAGGATTGGCGTTTGTGGAAGGATTGTTTGATCACAGAGTGAAGAAAGTGAGTTATG 1073
Query 1070 GAGATGGCTCTTCGAGGTTATGGGAAGGACCTCTTTTGGTGTTGATGTATTCCTTTGTGA 1129
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GAGATGGGTCTTCGAGGTTATGGGAAGGACCTCTTTTGGTGTTGATGTATTCCTTTGTGA 1133
Query 1130 CACTTATAGATTCGATGATGAGTGCAGTGTTCTATTTTAGCTGCCGAGTTTATTATAGTA 1189
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1134 CTCTTATAGATTCGATGATGAGTGCAGTGTTCTATTTTAGCTGTCGAGTTTATTATAGTA 1193
Query 1190 TGGAAGCTTCTAGAGGTGAAACTCAGCCAATCATGGAAACGGTTACGGTTGTGGATGCTG 1249
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1194 TGGAAGCTTCTAGAGGTGAAACTCAGCCAATCATGGAAACGGTTGCGGTTGTGGATGCTG 1253
Query 1250 AGTAATGGT-GCGTTGTGCGGATCAAACTCGGTGAATGGACATGGAAACGTATTAGCTGA 1308
||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1254 AGTAATGGTTGTGTTGTGCGGATCAAACTCGGTGAATCGACATGGAAGCGTATTAGCTGA 1313
Query 1309 AGAAGAAGTTGTATAT 1324
| ||||||||||||||
Sbjct 1314 ACAAGAAGTTGTATAT 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55078494270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5