BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26670.1
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472739 jgi|Araly1|472739|fgenesh2_kg.1__2693__AT1G26670.1 1286 0.0
Ahg894828 jgi|Araly1|894828|Al_scaffold_0006_2824 239 4e-62
Ahg894827 jgi|Araly1|894827|Al_scaffold_0006_2823 239 4e-62
Ahg936911 jgi|Araly1|936911|scaffold_501102.1 124 1e-27
> Ahg472739 jgi|Araly1|472739|fgenesh2_kg.1__2693__AT1G26670.1
Length=973
Score = 1286 bits (696), Expect = 0.0
Identities = 803/853 (94%), Gaps = 14/853 (2%)
Strand=Plus/Plus
Query 180 AAGATCGAAACATAT-AATT---GAAGATGAGCGACGTATTTGAAGGGTACGAGCGTCAA 235
||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||
Sbjct 127 AAGATCGAAACAT-TGAATTGAAGAAGATGAGCGACGTATTTGAAGGGTACGAGCGCCAA 185
Query 236 TACTGCGAGCTCTCAACCAATCTCTCTAGAAAATGTCACTCTGCATCGGTTCTCTCCAAC 295
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||
Sbjct 186 TACTGCGAGCTCTCAACCAATCTCTCCAGAAAATGTCACTCTGCATCAGTTCTCTCCGAC 245
Query 296 GGAGAGGAGAAGAAGGGGAAGATTGCTGAGATCAAGTCTGGAATAGACGAAGCTGATGTC 355
||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 246 GGAGAAGAGAAGAAGGGGAAGATTGCTGAGATTAAGTCTGGAATAGAAGAAGCTGATGTC 305
Query 356 TTGATCCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCGAGTGCTAAAGCTGTGTGT 415
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 306 TTGATCCGGAAAATGGATCTTGAGGCTAGAAGTTTGCAGCCGAGTGCTAAAGCTGTGTGT 365
Query 416 CTTTCTAAACTAAGAGAGTATAAATCTGATCTGAACCAATTGAAGAAGGAATTCAAACGA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CTTTCTAAACTAAGAGAGTATAAATCTGATCTGAACCAATTGAAGAAGGAATTCAAACGA 425
Query 476 GTCTCTTCCGCAGATGCTAAGCCGTCTTCCCGTGAAGAGTTGATGGAATCCGGAATGGCG 535
||||| |||||||||||||||| |||||| |||||||| ||||||||||| ||||| ||
Sbjct 426 GTCTCGTCCGCAGATGCTAAGCAGTCTTCTCGTGAAGAATTGATGGAATCGGGAATTGCA 485
Query 536 GATCTGCATGCAGTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCCGTGGAGAGGCTT 595
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 486 GATCTGCATGCAGTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCAGTGGAGAGGCTT 545
Query 596 GACCAATCAAGTGACAGAATCAGGGAGAGTAGAAGACTAATGCTGGAGACAGAAGAGGTT 655
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 GACCAATCCAGCGACCGAATCAGGGAGAGTAGAAGACTAATGCTGGAGACAGAAGAGGTT 605
Query 656 GGCATCTCAATTGTCCAAGATTTGAGTCAGCAACGCCAAACCCTCCTTCATGCGCACAAC 715
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 606 GGCATCTCAATTGTCCAAGATTTGAGTCAGCAACGACAAACCCTCCTTCATGCGCACAAC 665
Query 716 AAGCTTCATGGTGTGGATGACGCCATTGACAAGAGCAAGAAGGTGTTGACGGCTATGTCA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 AAGCTTCATGGTGTGGATGACGCCATTGACAAGAGCAAGAAGGTGTTGACGGCTATGTCA 725
Query 776 AGGAGAATGACTAGGAACAAATGGATCATTACATCGGTAATCGTGGCTCTCGTTCTCGCC 835
|| |||||||| |||||||| ||||| |||| |||||||||||||||||| ||||||||
Sbjct 726 AGAAGAATGACAAGGAACAAGTGGATTGTTACTTCGGTAATCGTGGCTCTCATTCTCGCC 785
Query 836 ATCATCTTGATCATCTCATACAAGCTTTCTCATTAATATACTCAAAAAACATTATTCATC 895
||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 786 ATCATTTTGATCATCTCATACAAGCTTTCTCATTAATATACTAAAAAAACATAATTCATC 845
Query 896 GTGATTGTGTATATATATATGATGGTTGATTTACTTTGTAATGGCCCAAGTGGTTACTTG 955
|||||||||| ||||||| ||||||||||| ||||||||||||||||||| |||||||
Sbjct 846 GTGATTGTGTGTATATAT--GATGGTTGATTC-CTTTGTAATGGCCCAAGTGTTTACTTG 902
Query 956 TATTTTTAAGTACGATGTTTGTATTGAAGTGGCAACACTTTTAACATTCATAAG---G-T 1011
||||| ||||||||||| |||||||||||||||||||||| ||||||||||| | |
Sbjct 903 TATTTC-AAGTACGATGTGTGTATTGAAGTGGCAACACTTT-AACATTCATAATTAAGAT 960
Query 1012 TTCCCAAGTCttt 1024
|||||||||||||
Sbjct 961 TTCCCAAGTCTTT 973
> Ahg894828 jgi|Araly1|894828|Al_scaffold_0006_2824
Length=408
Score = 239 bits (129), Expect = 4e-62
Identities = 157/171 (92%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 548 GTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCCGTGGAGAGGCTTGACCAATCAAGT 607
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 142 GTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCAGTGAAGAGGCTTGACCAATCAAAA 201
Query 608 GACAGAATCAGGGAGAGTAGAAGACTAATGCTGGAGACAGAAGAGGTTGGCATCTCAATT 667
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 202 GACAGAGTCAGGGAGATTAGAAGACTAATGCTGGAGACAGAAGAGGTTGGCATCTCAGTT 261
Query 668 GTCCAAGATTTGAGTCAGCAACGCCAAACCCTCCTTCATGCGCACAACAAG 718
|||||||| ||| ||||||| |||||||||| ||||||| ||||| ||||
Sbjct 262 TTCCAAGATCTGAATCAGCAATGCCAAACCCTTCTTCATGTGCACACCAAG 312
> Ahg894827 jgi|Araly1|894827|Al_scaffold_0006_2823
Length=867
Score = 239 bits (129), Expect = 4e-62
Identities = 157/171 (92%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 548 GTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCCGTGGAGAGGCTTGACCAATCAAGT 607
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 670 GTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCAGTGAAGAGGCTTGACCAATCAAAA 729
Query 608 GACAGAATCAGGGAGAGTAGAAGACTAATGCTGGAGACAGAAGAGGTTGGCATCTCAATT 667
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 730 GACAGAGTCAGGGAGATTAGAAGACTAATGCTGGAGACAGAAGAGGTTGGCATCTCAGTT 789
Query 668 GTCCAAGATTTGAGTCAGCAACGCCAAACCCTCCTTCATGCGCACAACAAG 718
|||||||| ||| ||||||| |||||||||| ||||||| ||||| ||||
Sbjct 790 TTCCAAGATCTGAATCAGCAATGCCAAACCCTTCTTCATGTGCACACCAAG 840
> Ahg936911 jgi|Araly1|936911|scaffold_501102.1
Length=589
Score = 124 bits (67), Expect = 1e-27
Identities = 79/85 (93%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 548 GTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCCGTGGAGAGGCTTGACCAATCAAGT 607
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 399 GTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCAGTGAAGAGGCTTGACCAATCAAGA 458
Query 608 GACAGAATCAGGGAGAGTAGAAGAC 632
| ||| ||||||||||||||||||
Sbjct 459 AATAGAGTCAGGGAGAGTAGAAGAC 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5