BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26680.1
Length=3308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921583 jgi|Araly1|921583|scaffold_102864.1 1995 0.0
Ahg947981 jgi|Araly1|947981|scaffold_704210.1 547 2e-154
Ahg947982 jgi|Araly1|947982|scaffold_704211.1 542 8e-153
Ahg887648 jgi|Araly1|887648|Al_scaffold_0022_1 422 1e-116
Ahg481325 jgi|Araly1|481325|fgenesh2_kg.4__385__AT2G24650.1 56.5 1e-06
> Ahg921583 jgi|Araly1|921583|scaffold_102864.1
Length=3053
Score = 1995 bits (1080), Expect = 0.0
Identities = 1423/1580 (90%), Gaps = 58/1580 (4%)
Strand=Plus/Plus
Query 1242 TGCTTGGAGGTAAAGAAAAAGAAGTATTGGTCGAGATGCAGAGCTTCTGTAGAAAACATG 1301
||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1246 TGCTTGGAGATAAAGAAAAGGAAGTATTGGTCAAGATGCAGAGCTTCTGTAGAAAACATG 1305
Query 1302 GATGATGATCAGACCAACATTGGAAACAGTTCAAGAAAGAAGAGAGTGAGTAAGAATCCA 1361
||||||||||||| | | |||| || | | | | | ||| | ||
Sbjct 1306 GATGATGATCAGA-C--C------AACA--TC--G---G-A-A-A--CAGT-----T-CA 1338
Query 1362 AGAGAGAAAGTAGAGTCTTCATCAGACCATTCTAGTTTTGTGGGATCTGTCAATCCTTCA 1421
||| |||| ||||||||||||||| ||||||||||||||| |||||| ||||||||||||
Sbjct 1339 AGAAAGAACGTAGAGTCTTCATCATACCATTCTAGTTTTGAGGGATCAGTCAATCCTTCA 1398
Query 1422 AGCCTATACAAAGATCAACTGTATCTTCCAAGGAATTTTGTGAGCTCAAAT-TTTCTGGA 1480
||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||
Sbjct 1399 AGCCTATACAAAGATCAACTGTATCTTCCAAGGAACTTTGTGAGCTCAAATGGTT-TGGA 1457
Query 1481 CAAAAGATGCAGTGAGATAGTTTTAAAGAATGAACGGGGAGAAAAAAGGACTTTAGTTTT 1540
||||||||||||||||||||| |||||||||||| ||||| |||||| ||||||||||||
Sbjct 1458 CAAAAGATGCAGTGAGATAGTGTTAAAGAATGAAAGGGGATAAAAAATGACTTTAGTTTT 1517
Query 1541 GAAACACTTCAAA-AAAGACCTTACTTTTCTCAAAAAAGGCTGGACTAGTTTCTGTCAAG 1599
||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1518 GAAACACTTCAAACAAA-ACCTTACTTTTCTCAAAAAAGGCTGGACCAGTTTCTGTCAAG 1576
Query 1600 TAAATAGGATCAAAGCTGGAGATTCCTTCAAGTTTAAACTGGTTGGAACATGGAACAAAC 1659
| || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1577 TTAACAGGATCAAAGCTGGAGATTCCTTCAAGTTTAAACTGGTTGGAACCTGGAATAAAC 1636
Query 1660 CTGTTCTTTCTTTGTGCCCTACAGAAACCAACTATCACAAAACTCCATTAGCGTGTTCAG 1719
|||||||| ||||||||||||||||| ||||| |||||||||||||||||| ||||||||
Sbjct 1637 CTGTTCTTACTTTGTGCCCTACAGAATCCAACCATCACAAAACTCCATTAGAGTGTTCAG 1696
Query 1720 AGGGTAACAAATCCGAAGAAAGTGAAGAGGAGGGTACTGAAGACAAGAATACCTCACAAG 1779
| ||||||||||||||||||| ||||||||||| || | |||||||||||||||| || |
Sbjct 1697 AAGGTAACAAATCCGAAGAAAATGAAGAGGAGGATATTAAAGACAAGAATACCTCTCAGG 1756
Query 1780 ATTGCTTGGAGGTGAAGAAAAGGAAGTATTGGTCAACATGCAGAGCTTCTGCAGAGAACA 1839
||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1757 ATTGCTTGGAGGTAAAGAAAAGGAAGTATTGGTCAAAATGCAGAGCCTCTGCAGAGAACA 1816
Query 1840 TAGATGATGATCAGACCAATATTGGAAACAGTTCAA-AAGAGAAGAGAGTGAAGAAAAAT 1898
| ||||||||||| ||||| ||||||| |||||||| || ||||||||||||||||||||
Sbjct 1817 TGGATGATGATCAAACCAACATTGGAAGCAGTTCAAGAA-AGAAGAGAGTGAAGAAAAAT 1875
Query 1899 CCAGTAAAGAAAGCAGAGTCTTCATCAGACCATTCTAGTTTTGTGGCTAATGTCACAGCT 1958
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1876 CCAATAAAGAAAGCAGACTCTTCATCAGACCATTCTAGTTTTGTGGCTAATGTCACAGCT 1935
Query 1959 TCAAGCCTAAACTATGATCGACTGTATTTACCACTAAGTTTCGTGAGTTCAAACGGTCTA 2018
||||||||||||| |||| ||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 1936 TCAAGCCTAAACTGTGATAGACTGTATTTACCACTAGGTTTCGCGAGGTCAAACGGTCTA 1995
Query 2019 GATAAAATGAACGGTAAGGAGATCGTTCTTCTTAATGAAGAAGGACTATCATGGAAGTTT 2078
|| ||||||| ||||||| || | ||||||||||| |||||||||| | ||||||||||
Sbjct 1996 GACAAAATGAGCGGTAAGAAGGTTGTTCTTCTTAACGAAGAAGGACGAACATGGAAGTTA 2055
Query 2079 AATTTGAAGTACAACCAAGCAGGCAAGCATACTTATGTCAGACCTGGTTGGTCAAGATTC 2138
|||||||| |||||| ||||||||| ||| ||||||||||||||||||||| |||||||
Sbjct 2056 AATTTGAAATACAACAAAGCAGGCATGCAGACTTATGTCAGACCTGGTTGGAAAAGATTC 2115
Query 2139 TGTGATGCAAATGGGATGAGCCAAGGTCAACAATTTACATTCAAACTGGTCCAAAAACAT 2198
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 2116 TGTGATGCAAATGGGATGAGTCAAGATCAACAATTTACATTCAAACTGGTCCAAAAACAT 2175
Query 2199 GGACCACCTGTCATGTATTTG-AGCCT--CAGTGAACATAGACCAAAGTCAGAATCTTCA 2255
||||||||||||||| |||| | ||| ||| ||||||||||||| ||||||||||||
Sbjct 2176 GGACCACCTGTCATGCGTTTGTA-CCTTGCAG--AACATAGACCAAAATCAGAATCTTCA 2232
Query 2256 TCGCACCGTTCCTATTTTGTAGGATCTGTCACTGCTTCAAGCATAAAGAAAGATAAACTG 2315
|||||| |||||||||| || |||||||||||||||||||||||||| |||||||| |||
Sbjct 2233 TCGCACGGTTCCTATTTGGTGGGATCTGTCACTGCTTCAAGCATAAACAAAGATAAGCTG 2292
Query 2316 TATTTATGGAAGAGTTTTGTGAGCTCTAATGGTCTGGACAAAGGATGCAAGAAGATAATT 2375
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 2293 TATTTACGGAAGAGTTTTGTGAGCTCAAATGGTCTGGACAAAGGATGCAAGAAGATAGTT 2352
Query 2376 TTAAAGAATAAATGGGGAAGAGAATGGAAATTAGTCTTGAAACACTACAAATCAAACTGC 2435
|||||||| ||||||||||||||||||| |||||||| | ||||||||||||| |||||
Sbjct 2353 TTAAAGAACGAATGGGGAAGAGAATGGAATTTAGTCTTCAGACACTACAAATCACACTGC 2412
Query 2436 TTTACTATTATCAAACGAGGCTGGACCAGTTTCTGCCAAGGCAACGGTTTGAAAGCTGGA 2495
|||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||
Sbjct 2413 TTTACTATTATCAAACGAGGCTGGGCCAGTTTCTGCCAAGGCAACGGATTAAAAGCTGGA 2472
Query 2496 GATTCCTTCAAGTTCAAACTGGTTGGAACCGGGGAAAAGCCTGTTCTTTCTTTGTGCCCT 2555
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2473 GATTCCTTCAAGTTTAAACTGGTTGGAACAGGGGAAAAGCCTGTTCTTTCTTTGTGCCCT 2532
Query 2556 GCAGAATCCAGCCATGAAAAAATTCCATTAGAGTGTCCAGAAGGTA-TAGATGATGTCAA 2614
||||||||||| || | |||||||||||||||| | |||||||| ||
Sbjct 2533 GCAGAATCCAGT--TG------T-------GAGTGTCCAGAAGGTAGT-GATGATGTAAA 2576
Query 2615 TTCACTCTCCTCAAATCCTAGCAGTGGAGATGACAGTAGTAGATCCGAAGAAAGC-GAAG 2673
|| |||||||||||| ||||||| |||||||||||||| |||||||||||| | ||||
Sbjct 2577 GTCCCTCTCCTCAAATTCTAGCAGCGGAGATGACAGTAGCAGATCCGAAGAA-GTTGAAG 2635
Query 2674 AGGAGAATATGGAAGACAAGAACATCTCACAGGATTGCTTGGAAACCAAGAAAAGGAAGT 2733
|||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 2636 AGGAGAGTATGGAAGACAAGAACATCTCACAGGATTGCTTGGAGATCAAGAAAAGGAAGT 2695
Query 2734 ATTGCTCTTCATCGTCATATAGTCAAAACCGATTTGTGACATTAACTCTTACACGGTCCG 2793
|||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2696 ATTGCTGTTCATCTTCATATAGTCAAAACCGATTTGTGACATTAACTCTTACACTGTCCG 2755
Query 2794 CTTTTCAAACCTATAAACTG 2813
||||||||||||| ||||||
Sbjct 2756 CTTTTCAAACCTACAAACTG 2775
Score = 1581 bits (856), Expect = 0.0
Identities = 1043/1134 (92%), Gaps = 10/1134 (1%)
Strand=Plus/Plus
Query 77 GAGGTGCTCAACAATGGCGGATCAATCTCTTCTACACTCTCCGATCAACCCACATTTCTT 136
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 9 GAGGTGTTCAACAATGGCGGATCAATCTCTTCTACACTCTCCGATCAAACCACATTTC-T 67
Query 137 TC-AGCCTATTCTTAC-AGAATCTCGCACTCACCTCAACATTCCTGTAGCTTTCTTCTCG 194
|| ||||| ||||| | || | |||||||||||||||||||||||| ||||||||||||
Sbjct 68 TCAAGCCTCTTCTT-CAAGGCTTTCGCACTCACCTCAACATTCCTGTTGCTTTCTTCTCG 126
Query 195 AAGCATGTTGAAGGAAGAAACAACCAAAACAAGACTGTGACGCTAAGATCAGACGCGTCG 254
|||||||||||||||| |||| | |||||||||| || || || ||||||||||||||
Sbjct 127 AAGCATGTTGAAGGAAAAAACGATCAAAACAAGATTGCGAAACTGAGATCAGACGCGTCA 186
Query 255 GATAAAACTTGGTTAGTGAAGATGGACGGTCTAAAACTAACCGACGGATGGGAAGATTTT 314
|| ||||||||||||||||||||||||||| | || |||||||||| ||||||||||||
Sbjct 187 GAGAAAACTTGGTTAGTGAAGATGGACGGTTTGAATTTAACCGACGGGTGGGAAGATTTT 246
Query 315 GCCTTTGCACATGATCTTCGAACTGGTGACATCGTCGTTTTCAGACTTGAAGGAGAAATG 374
||||||||||||||||| |||| ||||||||| ||| ||||||||| |||||||||||||
Sbjct 247 GCCTTTGCACATGATCTCCGAATTGGTGACATTGTCATTTTCAGACATGAAGGAGAAATG 306
Query 375 GTGTTTCATGTCACAGCTTTAGGACCAAGCTGTTGCGAGATTCAATATCATACATCATCT 434
||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 307 GTGTTTCATGTCACAGCTTTAGGACCAAGTTGTTGTGAGATTCAATATTATACATCATCT 366
Query 435 CACAATATCAATGATGATGATCGTAATGATCAGATCAACATTGCTTCAAGAAACAGTTCA 494
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 367 CACAACATCAATGATGATGATCGTAATGATCAGACCAACATTGCTTCAAGAAACAGTGAA 426
Query 495 AGAGTGAAGAAGAAT-CCACGAAAGAAAGTAGAGTCTTCTTTAGACCATTCTCGTTTTGT 553
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 427 AGAGTGAAGAAGAATCCCA-GAAAGAAAGTAGAGTCTTCTTTAGACCATTCTCGTTTTGT 485
Query 554 GGCAAAAGTCTCAGCTTGGTGCCTAAGCAATGATAGACTGTATATACCACTAAGTTTCGC 613
||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct 486 GGCAAAAGTCTCAGCTTGGGGCCTAAGAAATGATCGACTGTATATACCACTAAGTTTCGC 545
Query 614 CAGGTTAAACGGTCTGAACAAAATCAACAGTAAGAAAATCTATCTTCAGAACGAAGAAGG 673
|||| |||||||||||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct 546 GAGGTCAAACGGTCTGAACAAAATCAACAGTAAGAAAATCTATCTTTACAACGAAGCAGG 605
Query 674 AAGATCATGGAAGTTAGTTTTGAGACATGACAAATCAGGCATGCAAACTTTTGTCCAATC 733
||||||||||||||||| ||||| ||| ||||||||||||||||| |||| | |||||||
Sbjct 606 AAGATCATGGAAGTTAGATTTGAAACACGACAAATCAGGCATGCATACTTATATCCAATC 665
Query 734 CGGTTGGAGAAGATTCTGCTCTGAAAATGGGATTAGGCAAGGTCAATATACATTCAAACT 793
|||||||||||| |||||| ||| |||||||||||||||||| |||||||||||||||||
Sbjct 666 CGGTTGGAGAAGTTTCTGCGCTGCAAATGGGATTAGGCAAGGCCAATATACATTCAAACT 725
Query 794 TGTCCGAAAATCAGCACCACCTGTCATCCGTTTGTGCCGCGCAAAAGCTAAACCAAAACA 853
|||||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct 726 TGTCCGAAAATCGGCACCATCTCTCATCCGTTTGTGCCGCGAAAAAGCTAAACCAAAACA 785
Query 854 AAGATCAGTTGCAGAATATTCATCAGACCATTCTTGTTTTGAGGGATCTGTCACTCCTTC 913
||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||
Sbjct 786 AAGATCAGTTGCAGAATCTTCATCAGACCAATCTTGTTTTGAGGGATCTGTCAGTCCTTC 845
Query 914 AAGCCTAAGAAATGATCTACTGTATCTTCCAAGGAGCTTTGTGAACTCAAATCGTCTGGA 973
||||||||||||| ||| ||||| ||||||||||||||| |||| ||||||| |||||||
Sbjct 846 AAGCCTAAGAAATAATCAACTGTTTCTTCCAAGGAGCTTCGTGAGCTCAAATAGTCTGGA 905
Query 974 CAAAAGATGCAGTGAGATAGTTTTAAAGAATGAACAGGGAGTAAAATGGCCTTTAGTTTT 1033
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 906 GAAAAGATGCAGTGAGATAGTTTTAAAGAATGAACAGGGAATAAAATGGCCTTCAGTTTT 965
Query 1034 GAAACGTTTCAAATCAGTCACTTATCTCCCAAAAGGCTGGACTAGTTTCTGTCAAGTAAA 1093
||||| || |||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 966 GAAACATTACAAAACAGTCACTTATCTTACAAAAGGCTGGACTAGTTTCTGTCAAGTAAA 1025
Query 1094 CAGGATCAAAGCAGGAGATTCATTCAAGTTTAAACTGGTTGGAACCTGGAAAAAACCTGT 1153
|||||||||||| |||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 1026 CAGGATCAAAGCTGGAGATTCCTACAAGTTTAAACTGGTTGGAACCTGGACGAAACCTGT 1085
Query 1154 TCTTTCTTTGTGTCCGACACAATCC-AA-CAATCACAAAACTCCATTAGAGTGT 1205
||||||||||||||| ||| ||| | || || | ||||||||||||||||||||
Sbjct 1086 TCTTTCTTTGTGTCCTACA-AATTCTAATCA-TGACAAAACTCCATTAGAGTGT 1137
Score = 446 bits (241), Expect = 6e-124
Identities = 333/376 (89%), Gaps = 11/376 (3%)
Strand=Plus/Plus
Query 872 TTCATCAGACCATTCTTGTTTTGAGGGATCTGTCACTCCTTCAAGCCTA-AGAAATGATC 930
||||||| |||||||| ||||||||||||| |||| ||||||||||||| | ||| ||||
Sbjct 1356 TTCATCATACCATTCTAGTTTTGAGGGATCAGTCAATCCTTCAAGCCTATACAAA-GATC 1414
Query 931 TACTGTATCTTCCAAGGAGCTTTGTGAACTCAAATCGTCTGGACAAAAGATGCAGTGAGA 990
||||||||||||||||| |||||||| ||||||| || |||||||||||||||||||||
Sbjct 1415 AACTGTATCTTCCAAGGAACTTTGTGAGCTCAAATGGTTTGGACAAAAGATGCAGTGAGA 1474
Query 991 TAGTTTTAAAGAATGAACA-GGGAGT--AAAATGGCCTTTAGTTTTGAAACGTTTC-AA- 1045
|||| |||||||||||| | |||| | ||||| | ||||||||||||||| ||| ||
Sbjct 1475 TAGTGTTAAAGAATGAA-AGGGGA-TAAAAAAT-GACTTTAGTTTTGAAACACTTCAAAC 1531
Query 1046 ATCA-GTCACTTATCTCCCAAAAGGCTGGACTAGTTTCTGTCAAGTAAACAGGATCAAAG 1104
| | | |||| |||| |||||||||||| |||||||||||||| |||||||||||||
Sbjct 1532 AAAACCTTACTTTTCTCAAAAAAGGCTGGACCAGTTTCTGTCAAGTTAACAGGATCAAAG 1591
Query 1105 CAGGAGATTCATTCAAGTTTAAACTGGTTGGAACCTGGAAAAAACCTGTTCTTTCTTTGT 1164
| |||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1592 CTGGAGATTCCTTCAAGTTTAAACTGGTTGGAACCTGGAATAAACCTGTTCTTACTTTGT 1651
Query 1165 GTCCGACACAATCCAACAATCACAAAACTCCATTAGAGTGTTCAGAAGGTAACAAATCCG 1224
| || ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1652 GCCCTACAGAATCCAACCATCACAAAACTCCATTAGAGTGTTCAGAAGGTAACAAATCCG 1711
Query 1225 AAGAAAGTGAAGAGGA 1240
|||||| |||||||||
Sbjct 1712 AAGAAAATGAAGAGGA 1727
Score = 390 bits (211), Expect = 3e-107
Identities = 264/287 (92%), Gaps = 14/287 (5%)
Strand=Plus/Plus
Query 2889 TCTTCCGCGCGGTTTCACGCAGGTGAATGGCATCAACAAGCCAAGGAAGATAACTCTGCT 2948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2778 TCTTCCGCGCGGTTTCACGCAGGTGAATGGCATCAACAAGCCAAGGAAGATAACTCTGCT 2837
Query 2949 GGGTCAAGATGGAGTTAAAAAGG-TGGTGGATCTCTATCAGGA-AAGTAGTA-GCAGAAT 3005
||||||||||||||| |||| || ||||||||||||||||||| || | || || |||
Sbjct 2838 GGGTCAAGATGGAGT-AAAACGGGTGGTGGATCTCTATCAGGATAAA-A-TAAGCGGAAC 2894
Query 3006 AATGAGATTTGGAAAAGGCTGGAGAGAGTTCTTTGATGCTCAAGGCGTGAAGATAGACGA 3065
|||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 2895 AATGAGATTTGGCAAAGGCTGGAGAGAGTTCTGTGAAGCTCAAGGCGTGAAGATAGACGA 2954
Query 3066 CTCCTTTGTGTTGGAACTCATTTGGGAGAAAGAAGCAAGTCCGGTGCTTAAGTTCTGCAC 3125
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2955 GTCCTTTGTGTTGGAACTCATTTGGGAGAAAGAAGCAAGTCCGGTACTTAAGTTCTGCAC 3014
Query 3126 CAAAGTACCAAAGTAAACTCTGCTTGAGACTGTTTCCAGAGAAGTAG 3172
||||||| || ||||||||||||||||||||||||||||||
Sbjct 3015 CAAAGTA--AA------CTCTGCTTGAGACTGTTTCCAGAGAAGTAG 3053
Score = 375 bits (203), Expect = 8e-103
Identities = 303/349 (87%), Gaps = 15/349 (4%)
Strand=Plus/Plus
Query 1373 AGAGTCTTCATCAGACCATTCTAGTTTTGTGGGATCTGTCAATCCTTCAAGCCTATACAA 1432
||| |||||||||||||| ||| |||||| ||||||||||| ||||||||||||| | ||
Sbjct 798 AGAATCTTCATCAGACCAATCTTGTTTTGAGGGATCTGTCAGTCCTTCAAGCCTA-AGAA 856
Query 1433 A-GATCAACTGTATCTTCCAAGGAATTTTGTGAGCTCAAATTTTCTGGACAAAAGATGCA 1491
| ||||||||| ||||||||||| || |||||||||||| |||||| ||||||||||
Sbjct 857 ATAATCAACTGTTTCTTCCAAGGAGCTTCGTGAGCTCAAATAGTCTGGAGAAAAGATGCA 916
Query 1492 GTGAGATAGTTTTAAAGAATGAACGGGGAGAAAAAA-GGACTTTAGTTTTGAAACACTT- 1549
|||||||||||||||||||||||| |||| | |||| || ||| |||||||||||| ||
Sbjct 917 GTGAGATAGTTTTAAAGAATGAACAGGGA-ATAAAATGGCCTTCAGTTTTGAAACA-TTA 974
Query 1550 CAAAAAAGACCTTACTTTTCTCAAAAAAGGCTGGACTAGTTTCTGTCAAGTAAATAGGAT 1609
||||| || | |||| ||| | |||||||||||||||||||||||||||||| |||||
Sbjct 975 CAAAACAGTC---ACTTATCTTACAAAAGGCTGGACTAGTTTCTGTCAAGTAAACAGGAT 1031
Query 1610 CAAAGCTGGAGATTCCTTCAAGTTTAAACTGGTTGGAACATGGAAC-AAACCTGTTCTTT 1668
||||||||||||||||| ||||||||||||||||||||| |||| | |||||||||||||
Sbjct 1032 CAAAGCTGGAGATTCCTACAAGTTTAAACTGGTTGGAACCTGGA-CGAAACCTGTTCTTT 1090
Query 1669 CTTTGTGCCCTACAGAAACC-AA-CTATCACAAAACTCCATTAGCGTGT 1715
||||||| |||||| || | || | || ||||||||||||||| ||||
Sbjct 1091 CTTTGTGTCCTACA-AATTCTAATC-ATGACAAAACTCCATTAGAGTGT 1137
Score = 244 bits (132), Expect = 2e-63
Identities = 267/329 (81%), Gaps = 21/329 (6%)
Strand=Plus/Plus
Query 1373 AGAGTCTTCATCAG-ACCATT-CTAGTTTTGTGGGATCTGTCAATCCTTCAAGCCTATAC 1430
||| |||||||| | || || ||| ||| ||||||||||||| | |||||||| || ||
Sbjct 2223 AGAATCTTCATC-GCACGGTTCCTA-TTTGGTGGGATCTGTCACTGCTTCAAGCATAAAC 2280
Query 1431 AAAGATCAA-CTGTATCTT-C-CAAGGAATTTTGTGAGCTCAAATTTTCTGGACAAAAGA 1487
|||||| || |||||| || | || || |||||||||||||||| |||||||||| ||
Sbjct 2281 AAAGAT-AAGCTGTAT-TTACGGAA-GAGTTTTGTGAGCTCAAATGGTCTGGACAAAGGA 2337
Query 1488 TGC-AGTGAGATAGTTTTAAAGAATGAACGGGG-AGAAAAAAGGACTTTAGTTTTGAAAC 1545
||| || |||||||||||||||| ||| |||| || | || ||| |||||| || | ||
Sbjct 2338 TGCAAG-AAGATAGTTTTAAAGAACGAATGGGGAAG-AGAATGGAATTTAGTCTTCAGAC 2395
Query 1546 ACTTCAAAAAAGAC--C-TTACTTTTCTCAAAAAAGGCTGGACTAGTTTCTGTCAAGTAA 1602
||| |||| | || | ||||| || ||||| ||||||| | |||||||| |||| |
Sbjct 2396 ACTACAAATCACACTGCTTTACTATTATCAAACGAGGCTGGGCCAGTTTCTGCCAAGGCA 2455
Query 1603 ATAGGA-TCAAAGCTGGAGATTCCTTCAAGTTTAAACTGGTTGGAACATGGAACAAA-CC 1660
| ||| | ||||||||||||||||||||||||||||||||||||||| || | ||| ||
Sbjct 2456 A-CGGATTAAAAGCTGGAGATTCCTTCAAGTTTAAACTGGTTGGAACAGGGGA-AAAGCC 2513
Query 1661 TGTTCTTTCTTTGTGCCCTACAGAAACCA 1689
||||||||||||||||||| ||||| |||
Sbjct 2514 TGTTCTTTCTTTGTGCCCTGCAGAATCCA 2542
Score = 233 bits (126), Expect = 5e-60
Identities = 215/256 (84%), Gaps = 14/256 (5%)
Strand=Plus/Plus
Query 1237 AGGATTGCTTGGAGGTAAAGAAAAAGAAGTATTGGTCGAGATGCAGAGCTTCTGTAGAAA 1296
|||||||||||||||||||||||| |||||||||||| | ||||||||| |||| ||| |
Sbjct 1754 AGGATTGCTTGGAGGTAAAGAAAAGGAAGTATTGGTCAAAATGCAGAGCCTCTGCAGAGA 1813
Query 1297 ACATGGATGATGATCAGACCAACATTGGAAACAGTTCAAGAAAGAAGAGAGTG-AGTAAG 1355
|||||||||||||||| ||||||||||||| |||||||||||||||||||||| || ||
Sbjct 1814 ACATGGATGATGATCAAACCAACATTGGAAGCAGTTCAAGAAAGAAGAGAGTGAAG-AAA 1872
Query 1356 AATCCAAGAGAGAAAGTAGAGTCTTCATCAGACCATTCTAGTTTTGTGGG-ATCTGTCA- 1413
||||||| | |||||| ||| |||||||||||||||||||||||||||| | |||||
Sbjct 1873 AATCCAATAAAGAAAGCAGACTCTTCATCAGACCATTCTAGTTTTGTGGCTAA-TGTCAC 1931
Query 1414 ATCCTTCAAGCCTATACAAAGATCA-ACTGTATCTT-CCA--AGGAATTTTGTGAGCTCA 1469
| | |||||||||| || ||| | ||||||| || ||| ||| ||| | ||| |||
Sbjct 1932 AGC-TTCAAGCCTAAACTGTGAT-AGACTGTAT-TTACCACTAGG--TTTCGCGAGGTCA 1986
Query 1470 AATTTTCTGGACAAAA 1485
|| ||| |||||||
Sbjct 1987 AACGGTCTAGACAAAA 2002
> Ahg947981 jgi|Araly1|947981|scaffold_704210.1
Length=598
Score = 547 bits (296), Expect = 2e-154
Identities = 368/403 (91%), Gaps = 4/403 (1%)
Strand=Plus/Plus
Query 77 GAGGTGCTCAACAATGGCGGATCAATCTCTTCTACACTCTCCGATCAACCCACATTTCTT 136
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 8 GAGGTGTTCAACAATGGCGGATCAATCTCTTCTACACTCTCCGATCAAACCACATTTC-T 66
Query 137 TC-AGCCTATTCTTACAGAATCTCGCACTCACCTCAACATTCCTGTAGCTTTCTTCTCGA 195
|| ||||| |||||| || | |||||||||||||||||||||||| |||||||||||||
Sbjct 67 TCAAGCCTCTTCTTAAAGGCTTTCGCACTCACCTCAACATTCCTGTTGCTTTCTTCTCGA 126
Query 196 AGCATGTTGAAGGAAGAAACAACCAAAACAAGACTGTG-ACGCTAAGATCAGACGCGTCG 254
||||||||||||||| |||| | ||||||||||||||| || || ||||||||||||||
Sbjct 127 AGCATGTTGAAGGAAAAAACGATCAAAACAAGACTGTGAAC-CTGAGATCAGACGCGTCA 185
Query 255 GATAAAACTTGGTTAGTGAAGATGGACGGTCTAAAACTAACCGACGGATGGGAAGATTTT 314
|| ||||||||||||||||||||||||||| | || |||||||||| ||||||||||||
Sbjct 186 GAGAAAACTTGGTTAGTGAAGATGGACGGTTTGAATTTAACCGACGGGTGGGAAGATTTT 245
Query 315 GCCTTTGCACATGATCTTCGAACTGGTGACATCGTCGTTTTCAGACTTGAAGGAGAAATG 374
|||||| |||||||||| |||| ||||||||| ||||||||||||| |||||||||||||
Sbjct 246 GCCTTTTCACATGATCTCCGAATTGGTGACATTGTCGTTTTCAGACATGAAGGAGAAATG 305
Query 375 GTGTTTCATGTCACAGCTTTAGGACCAAGCTGTTGCGAGATTCAATATCATACATCATCT 434
||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 306 GTGTTTCATGTCACAGCTTTAGGACCAAGTTGTTGTGAGATTCAATATTATACATCATCT 365
Query 435 CACAATATCAATGATGATGATCGTAATGATCAGATCAACATTG 477
|| || |||||||||||||||||||||||||||| ||| ||||
Sbjct 366 CATAACATCAATGATGATGATCGTAATGATCAGACCAATATTG 408
Score = 165 bits (89), Expect = 2e-39
Identities = 123/139 (88%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 833 CGCAAAAGCTAAACCAAAACAAAGATCA-GTTGCAGAATATTCATCAGACCATTCTTGTT 891
|||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||
Sbjct 437 CGCAAAAGCTAAACCAAAACAAAGATCACAAT-CAGATTCTTCATCAGACCATTCTTGTT 495
Query 892 TTGAGGGATCTGTCA-CTCCTTCAAGCCTAAGAAATGATCTACTGTATCTTCCAAGGAGC 950
||||||||||||||| | |||||||||| ||||||| ||| ||||| ||||||||||| |
Sbjct 496 TTGAGGGATCTGTCAGC-CCTTCAAGCCCAAGAAATAATCAACTGTTTCTTCCAAGGAAC 554
Query 951 TTTGTGAACTCAAATCGTC 969
|| |||| ||||||| |||
Sbjct 555 TTCGTGAGCTCAAATAGTC 573
> Ahg947982 jgi|Araly1|947982|scaffold_704211.1
Length=526
Score = 542 bits (293), Expect = 8e-153
Identities = 368/404 (91%), Gaps = 6/404 (1%)
Strand=Plus/Plus
Query 77 GAGGTGCTCAACAATGGCGGATCAATCTCTTCTACACTCTCCGATCAACCCACATTTCTT 136
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 8 GAGGTGTTCAACAATGGCGGATCAATCTCTTCTACACTCTCCGATCAAACCACATTTC-T 66
Query 137 TC-AGCCTATTCTT-ACAGAATCTCGCACTCACCTCAACATTCCTGTAGCTTTCTTCTCG 194
|| ||||| ||||| | || | |||||||||||||||||||||||| ||||||||||||
Sbjct 67 TCAAGCCTCTTCTTGA-AGGCTTTCGCACTCACCTCAACATTCCTGTTGCTTTCTTCTCG 125
Query 195 AAGCATGTTGAAGGAAGAAACAACCAAAACAAGACTGTG-ACGCTAAGATCAGACGCGTC 253
|||||||||||||||| |||| | ||||||||||||||| || || ||||||||||||||
Sbjct 126 AAGCATGTTGAAGGAAAAAACGATCAAAACAAGACTGTGAAC-CTGAGATCAGACGCGTC 184
Query 254 GGATAAAACTTGGTTAGTGAAGATGGACGGTCTAAAACTAACCGACGGATGGGAAGATTT 313
|| ||||||||||||||||||||||||||| | || |||||||||| |||||||||||
Sbjct 185 AGAGAAAACTTGGTTAGTGAAGATGGACGGTTTGAATTTAACCGACGGGTGGGAAGATTT 244
Query 314 TGCCTTTGCACATGATCTTCGAACTGGTGACATCGTCGTTTTCAGACTTGAAGGAGAAAT 373
||||||| |||||||||| |||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 245 TGCCTTTTCACATGATCTCCGAATTGGTGACATTGTCGTTTTCAGACATGAAGGAGAAAT 304
Query 374 GGTGTTTCATGTCACAGCTTTAGGACCAAGCTGTTGCGAGATTCAATATCATACATCATC 433
|||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||
Sbjct 305 GGTGTTTCATGTCACAGCTTTAGGACCAAGTTGTTGTGAGATTCAATATTATACATCATC 364
Query 434 TCACAATATCAATGATGATGATCGTAATGATCAGATCAACATTG 477
||| || |||||||||||||||||||||||||||| ||| ||||
Sbjct 365 TCATAACATCAATGATGATGATCGTAATGATCAGACCAATATTG 408
Score = 89.8 bits (48), Expect = 1e-16
Identities = 61/67 (91%), Gaps = 2/67 (3%)
Strand=Plus/Plus
Query 832 GCGCAAAAGCTAAACCAAAACAAAGATCAGT-TGCAGAATATTCATCAGACCATTCTTGT 890
||||||||||||||||||||||||||||| | |||| | |||||||||||||||||||
Sbjct 436 GCGCAAAAGCTAAACCAAAACAAAGATCACAAT-CAGATTCTTCATCAGACCATTCTTGT 494
Query 891 TTTGAGG 897
|||||||
Sbjct 495 TTTGAGG 501
> Ahg887648 jgi|Araly1|887648|Al_scaffold_0022_1
Length=426
Score = 422 bits (228), Expect = 1e-116
Identities = 281/307 (92%), Gaps = 2/307 (1%)
Strand=Plus/Plus
Query 171 AACATTCCTGTAGCTTTCTTCTCGAAGCATGTTGAAGGAAGAAACAACCAAAACAAGACT 230
||||||||||| |||||||||||||||||||||||||||| |||| | ||||||||||||
Sbjct 121 AACATTCCTGTTGCTTTCTTCTCGAAGCATGTTGAAGGAAAAAACGATCAAAACAAGACT 180
Query 231 GTG-ACGCTAAGATCAGACGCGTCGGATAAAACTTGGTTAGTGAAGATGGACGGTCTAAA 289
||| || || |||||||||||||| || ||||||||||||||||||||||||||| | ||
Sbjct 181 GTGAAC-CTGAGATCAGACGCGTCAGAGAAAACTTGGTTAGTGAAGATGGACGGTTTGAA 239
Query 290 ACTAACCGACGGATGGGAAGATTTTGCCTTTGCACATGATCTTCGAACTGGTGACATCGT 349
|||||||||| |||||||||||||||||| |||||||||| |||| ||||||||| ||
Sbjct 240 TTTAACCGACGGGTGGGAAGATTTTGCCTTTTCACATGATCTCCGAATTGGTGACATTGT 299
Query 350 CGTTTTCAGACTTGAAGGAGAAATGGTGTTTCATGTCACAGCTTTAGGACCAAGCTGTTG 409
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 CGTTTTCAGACATGAAGGAGAAATGGTGTTTCATGTCACAGCTTTAGGACCAAGTTGTTG 359
Query 410 CGAGATTCAATATCATACATCATCTCACAATATCAATGATGATGATCGTAATGATCAGAT 469
|||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 360 TGAGATTCAATATTATACATCATCTCATAACATCAATGATGATGATCGTAATGATCAGAC 419
Query 470 CAACATT 476
||| |||
Sbjct 420 CAATATT 426
Score = 100 bits (54), Expect = 6e-20
Identities = 74/83 (89%), Gaps = 4/83 (5%)
Strand=Plus/Plus
Query 90 ATGGCGGATCAATCTCTTCTACACTCTCCGATCAACCCACATTTCTTTCA-GCCTATTCT 148
||||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||
Sbjct 1 ATGGCGGATCAATCTCTTCTACACTCTCCGATCAAACCACATTTCTT-CAAGCCTCTTCT 59
Query 149 T-ACAGAATCTCGCACTCACCTC 170
| | || | |||||||||||||
Sbjct 60 TGA-AGGCTTTCGCACTCACCTC 81
> Ahg481325 jgi|Araly1|481325|fgenesh2_kg.4__385__AT2G24650.1
Length=4830
Score = 56.5 bits (30), Expect = 1e-06
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 2758 AAAACCGATTTGTGACATTAACTCTTACAC 2787
||||||||||||||||||||||||||||||
Sbjct 4517 AAAACCGATTTGTGACATTAACTCTTACAC 4546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124866897013
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5