BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26690.1
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912378 jgi|Araly1|912378|Al_scaffold_0001_2632 1026 0.0
Ahg926241 jgi|Araly1|926241|scaffold_201802.1 562 2e-159
Ahg943718 jgi|Araly1|943718|scaffold_604262.1 219 4e-56
Ahg931756 jgi|Araly1|931756|scaffold_304213.1 219 4e-56
> Ahg912378 jgi|Araly1|912378|Al_scaffold_0001_2632
Length=645
Score = 1026 bits (555), Expect = 0.0
Identities = 615/645 (95%), Gaps = 0/645 (0%)
Strand=Plus/Plus
Query 94 ATGTTTCTCCGATCACTCAATCTCTGTACAATACTACTCTTCCTAGCGATTTCATCACAA 153
||| |||||| |||||| |||||||| || ||||||||||||||||||||| ||||||||
Sbjct 1 ATGGTTCTCCAATCACTAAATCTCTGCACGATACTACTCTTCCTAGCGATTGCATCACAA 60
Query 154 GTTTCTCAATCTCTCCACTTCGAATTGCAATCTGGTCGAACAAAATGTATATCGGAAGAC 213
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 61 GTTTCTCAATCTCTCCACTTCGAATTGCAATCTGGTCGAACAAAATGTATCTCCGAAGAC 120
Query 214 ATAAAAAGCAATTCAATGACCGTCGGGAAGTACACCGTCGTTAACCCTAACGAAGCTCAT 273
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 ATCAAAAGCAATTCAATGACCGTCGGGAAATACACCGTCGTTAACCCTAACGAAGCTCAT 180
Query 274 CCTTCTCCTCAATCTCACAAGATCTCCATCAGAGTGACATCGAGTTACGGGAACACGTAT 333
|||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 181 CCTTCTCCTCCATCTCACAAGATCTCTATCAGAGTGACATCGAGTTACGGTAACACGTAT 240
Query 334 CATCACGCGGAAGATGTAGAATCGGGACAATTCGCGTTCACGGCGGTGGAGTCTGGAGAT 393
||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 CATCACGCGGAAGGTGTTGAATCGGGACAATTCGCGTTCACGGCGGTGGAGGCTGGAGAT 300
Query 394 TACATGGCTTGTTACACAGCTGTTGATCATAAACCTGAGGTTACATTGAGTATTGATTTC 453
|| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATATGGCTTGTTTCACTGCTGTTGATCATAAACCTGAGGTTACATTGAGTATTGATTTT 360
Query 454 GATTGGAGAACTGGTGTTCAATCTAAAAGCTGGAGTAGTGTTGCTAAGAAGAGCCAAGTC 513
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 361 GATTGGAGAACTGGTGTTCAATCTAAGAGTTGGAGTAGTGTAGCTAAGAAGAGCCAAGTC 420
Query 514 GAAGTTATGGAGTTTGATGTAAAAAGACTTATTGAAACCGTCAATTCGATTCATGAAGAG 573
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 421 GAAGTTATGGAGTTTGATGTAAAAAGACTGATTGAAACCGTCAACTCTATTCATGAAGAG 480
Query 574 ATGTTTTATCTCAGAGAAAGGGAAGAAGAGATGCAGAATCTGAACCGGGCTACTAACTCG 633
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 481 ATGTTTTATCTCAGAGAAAGGGAAGAAGAGATGCAAAATCTGAACCGGGCTACAAACTCG 540
Query 634 AAAATGGCGTGGTTGAGTTTCCTCTCTCTTTTCGTATGCTTAGGAGTCGCGGGAATGCAG 693
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAAATGGCGTGGTTGGGTTTCCTCTCTCTTTTCGTATGCTTAGGAGTCGCGGGAATGCAG 600
Query 694 TTTGTGCATTTGAAGACGTTTTTCGAGAAGAAGAAAGTCATCTAA 738
||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTTTGCATTTGAAGACGTTTTTCGAGAAGAAGAAAGTCATCTAA 645
> Ahg926241 jgi|Araly1|926241|scaffold_201802.1
Length=685
Score = 562 bits (304), Expect = 2e-159
Identities = 513/612 (84%), Gaps = 22/612 (4%)
Strand=Plus/Plus
Query 136 CTAGCGATTTCATCA-CAAGTTTCTCAATCTCTCCACTTCGAAT-TGCAATCTGGTCGAA 193
|||||||||| ||| ||| |||| || || || ||||||| || | || || ||||| |
Sbjct 63 CTAGCGATTTGGTCACCAA-TTTCACACTCGCTTCACTTCG-ATCTACACTCAGGTCGCA 120
Query 194 CAAAATGTATATCGGAAGACATAAAAAGCAATTCAATGACCGTCGGGAAGTACACCGTCG 253
|||||||||| | |||||||| ||||||||||||||||| || || || |||| | |||
Sbjct 121 CAAAATGTATCGCCGAAGACATCAAAAGCAATTCAATGACTGTTGGTAAATACAACATCG 180
Query 254 TTAACCCTAACGAAGCTCATCCTTCT-CCTCAATCTCACAAGATCTCCATC-AGAGTGAC 311
||| ||| |||||| ||| ||| | || ||||||||||| |||||| || || |||||
Sbjct 181 ATAATCCTCACGAAGGTCAAGCTT-TACCACAATCTCACAAAATCTCCGTCAAG-GTGAC 238
Query 312 ATCGAGTTACGGGAACACGTATCATCACGCGGAAGATGTAGAATCGGGACAATTCGCGTT 371
|| | || |||||||| || |||||||||||| | || || |||||||||||||||||
Sbjct 239 GTCTAATTCCGGGAACAATTACCATCACGCGGAACAAGTTGATTCGGGACAATTCGCGTT 298
Query 372 CACGGCGGT-GGAGTCTGGAGATTACATGGCTTG-TTACACAGCTGTTGATCATAAACCT 429
| | || | | || | ||||||||||||||||| || ||| |||||||||||||| |||
Sbjct 299 CTCTGCTATAGAAG-CAGGAGATTACATGGCTTGCTT-CACTGCTGTTGATCATAAGCCT 356
Query 430 GAGGTTACATTGAGTATTGATTTCGATTGG-AGAACTGGTGTTCAATCTAAAAGCTGGAG 488
|||||| | |||||||||||||| || ||| || |||||||||||||||||||||||| |
Sbjct 357 GAGGTTTCGTTGAGTATTGATTTTGAGTGGAAG-ACTGGTGTTCAATCTAAAAGCTGG-G 414
Query 489 -TAGTGTTGCTAAGAAGAGCCAAGTCGAAGTTATGGAGTTTGATGTAAAAAGACTTATTG 547
|| ||||||||||||||||||||||||||||||||| ||||| || || || ||| |||
Sbjct 415 CTAATGTTGCTAAGAAGAGCCAAGTCGAAGTTATGGAATTTGAGGTTAAGAGTCTTCTTG 474
Query 548 AAACCGTCAATTCGATTCATGAAGAGATGTTTTATCTCAGAGAAAGGGAAGAAGAGATGC 607
| ||||| || ||||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 475 ATACCGTTAACTCGATTCATGAAGAGATGTATTATCTTAGAGATAGGGAAGAAGAGATGC 534
Query 608 A-GAATCTGAACCGGGCTACTAACTCGAAAATGGCGTGGTTGAGTTTCCTCTC-TCTTTT 665
| || |||||||||| | |||||| |||||||||||||||||||| | ||||| | ||||
Sbjct 535 AAGA-TCTGAACCGGTCCACTAACACGAAAATGGCGTGGTTGAGTGTGCTCTCGT-TTTT 592
Query 666 CGTATGCTTAGGAGTCGC-GGGAATGCAGTTTGTGCATTTGAAGACGTTTTTCGAGAAGA 724
||| ||| ||||||| || |||| |||||||| |||| ||||||||||||||||||||||
Sbjct 593 CGTCTGCATAGGAGTGGCAGGGA-TGCAGTTTTTGCACTTGAAGACGTTTTTCGAGAAGA 651
Query 725 AGAAAGTCATCT 736
|||| || ||||
Sbjct 652 AGAAGGTTATCT 663
> Ahg943718 jgi|Araly1|943718|scaffold_604262.1
Length=204
Score = 219 bits (118), Expect = 4e-56
Identities = 134/142 (94%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 377 CGGTGGAGTCTGGAGATTACATGGCTTGTTACACAGCTGTTGATCATAAACCTGAGGTTA 436
|||||||| |||||||||| |||||||||| ||| ||| ||||||||||||||||||||
Sbjct 1 CGGTGGAGGCTGGAGATTATATGGCTTGTTTCACTGCTCTTGATCATAAACCTGAGGTTG 60
Query 437 CATTGAGTATTGATTTCGATTGGAGAACTGGTGTTCAATCTAAAAGCTGGAGTAGTGTTG 496
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 61 CATTGAGTATTGATTTCGATAGGAGAACTGGTGTTCAATCTAAAAGCTGGAGTAGTGTAG 120
Query 497 CTAAGAAGAGCCAAGTCGAAGT 518
||||||||||||||||||||||
Sbjct 121 CTAAGAAGAGCCAAGTCGAAGT 142
> Ahg931756 jgi|Araly1|931756|scaffold_304213.1
Length=204
Score = 219 bits (118), Expect = 4e-56
Identities = 134/142 (94%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 377 CGGTGGAGTCTGGAGATTACATGGCTTGTTACACAGCTGTTGATCATAAACCTGAGGTTA 436
|||||||| |||||||||| |||||||||| ||| ||| ||||||||||||||||||||
Sbjct 1 CGGTGGAGGCTGGAGATTATATGGCTTGTTTCACTGCTCTTGATCATAAACCTGAGGTTG 60
Query 437 CATTGAGTATTGATTTCGATTGGAGAACTGGTGTTCAATCTAAAAGCTGGAGTAGTGTTG 496
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 61 CATTGAGTATTGATTTCGATAGGAGAACTGGTGTTCAATCTAAAAGCTGGAGTAGTGTAG 120
Query 497 CTAAGAAGAGCCAAGTCGAAGT 518
||||||||||||||||||||||
Sbjct 121 CTAAGAAGAGCCAAGTCGAAGT 142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33052569039
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5