BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26700.1
Length=1733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472736 jgi|Araly1|472736|fgenesh2_kg.1__2690__AT1G26700.1 2809 0.0
> Ahg472736 jgi|Araly1|472736|fgenesh2_kg.1__2690__AT1G26700.1
Length=1736
Score = 2809 bits (1521), Expect = 0.0
Identities = 1668/1739 (96%), Gaps = 9/1739 (1%)
Strand=Plus/Plus
Query 1 TTGGTTTCTTGCACGCGAAGAAAGAAACATCTGAAA-ATTTGTTCATAAAGAATTCGGTT 59
|||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||
Sbjct 1 TTGGTTTCTTGCACGCGAAGAAAGAAACATCTGAAAGA-TTGTTCGTAAAGAATTCGGTT 59
Query 60 GAAGAAATGAGAGAAGAAACAGAACCAAGCGAGAGAACGTTGGGTTTAACACCAACTTGG 119
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 60 GCAGAAATGAGAGAAGAAACAGAACCAAGCGAAAGAACGTTGGGTTTAACACCAACTTGG 119
Query 120 TCAGTTGCTACAGTATTGACTATCTTTGTATTTGTTTCTTTGATCGTTGAACGTTCCATT 179
|| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCCGTTGCTACAGTGTTGACTGTCTTTGTATTTGTTTCTTTGATCGTTGAACGTTCCATT 179
Query 180 CATCGGCTTAGTAACTGGTTGCAAAAGACTAAGAGAAAACCTTTGTTTGCTGCATTGGAG 239
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 180 CATCGGCTTAGTAACTGGTTGCAAGAGACGAAGAGAAAACCTTTGTTTGCTGCATTGGAG 239
Query 240 AAAATGAAAGAAGAGCTGATGCTGCTCGGATTCATATCGCTTCTTCTTACAGCTACCTCT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 240 AAAATGAAAGAAGAGCTGATGCTGCTCGGATTCATATCGCTTCTTCTTACAGCAACCTCT 299
Query 300 AGCACAATAGCTAACATATGCGTCTCTTCAAGTTTCCACAACGATAGATTTGTCCCATGT 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 300 AGCACAATAGCTAACATATGCGTCTCTTCAAGTTTCCACAATGATAGATTTGTTCCATGT 359
Query 360 ACGCC-TTCTGAGATTAATG---AGGAACTTGAAAGTACTATTTCTA-CTGTCAAGCGGA 414
|| || || |||||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 360 AC-CCGCTCCGAGATTAATGATCAGGAACTTGAAAGTACTATTTC-ATCTGTCAAGCGGA 417
Query 415 CTCAGTTAACGAGATCTCTCTTCTTGCACACTCTGAGGAGAAGATTGAGTGGTATAGGAG 474
||| |||||| |||||||||||||| |||| | |||| |||||||||||||| ||||| |
Sbjct 418 CTCGGTTAACTAGATCTCTCTTCTTCCACATTATGAGAAGAAGATTGAGTGGCATAGGCG 477
Query 475 AGGATACGTGCAGCGAGGGGCATGAGCCATTTCTTTCATATGAAGGCATGGAACAATTGC 534
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGAATACGTGCAGCGAGGGACATGAGCCATTTCTTTCATATGAAGGCATGGAACAATTGC 537
Query 535 ATCGCTTCATATTTATAATGGCAGTCACTCATGTAACTTACAGCTGCTTGACAATGCTTC 594
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 538 ATCGCTTCATATTTATAATGGCAGTCACACATGTAACTTACAGCTGCTTGACAATGCTTC 597
Query 595 TTGCAATCGTGAAGATTCATAGATGGAGGATATGGGAAGACGAGGTTCATATGGATCGAA 654
||||||| |||||||||||||||||| |||| ||||||||||||| ||||||||||||||
Sbjct 598 TTGCAATAGTGAAGATTCATAGATGGCGGATCTGGGAAGACGAGGCTCATATGGATCGAA 657
Query 655 ATGATTGCTTAACTGTGGTTGCACGCGAAAAGATTTTCCGAAGGCAAACAACATTTGTCC 714
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 658 ATGATTGCTTAACTGTGGTTGCACGTGAAAAGATTTTCCGAAGGCAAACAACATTTGTCC 717
Query 715 AGTATCATACATCTGCTCCTCTGGTCAAGAATAGATTACTTATATGGGTGATATGTTTCT 774
||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 718 AGTATCATACATCTGTTCCTCTGGTTAAGAATAGATTACTCATATGGGTGATATGTTTCT 777
Query 775 TCAGACAGTTTGGACATTCTGTTGTTCGTTCTGACTATCTTACACTCCGAAAGGGATTCA 834
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 778 TCAGACAGTTTGGACACTCTGTTGTTCGTTCTGACTATCTTACACTCCGCAAGGGATTCA 837
Query 835 TCATGAACCATCACTTAACATTGACATACGATTTTCATAGCTATATGATCCGCTCTATGG 894
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCATGAACCATCACCTAACATTGACATACGATTTTCATAGCTATATGATCCGCTCTATGG 897
Query 895 AAGAAGAGTTCCAAAAGATTGTTGGCGTCAGTGGGCCACTTTGGGGTTTTGTAGTTGGTT 954
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAGAAGAATTCCAAAAGATTGTTGGCGTCAGTGGGCCACTTTGGGGTTTTGTAGTTGGTT 957
Query 955 TCATGCTTTTCAACATAAAAGGATCAAATCTTTATTTCTGGCTAGCGATCATTCCAATCA 1014
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 958 TCATGCTTTTCAACATAAAAGGGTCAAATCTTTATTTCTGGTTAGCGATCATTCCAATCA 1017
Query 1015 CTCTTGTTCTTTTGGTTGGTGCAAAGTTGCAACATGTCATCGCAACTTTAGCATTGGAGA 1074
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CTCTTGTTCTTTTGGTTGGCGCAAAGTTGCAACATGTCATCGCAACTTTAGCATTGGAGA 1077
Query 1075 ACGCTAGTATAACAGAATATGCTTCTGGTATAAAGCTGAGACCTCGCGATGAACTTTTTT 1134
||||| | || |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1078 ACGCTGGGATTACAGAATATGCTTCTGGTATAAAGTTGAGACCTCGCGATGAACTTTTTT 1137
Query 1135 GGTTCAAGAAACCGGAATTACTCTTATCCCTTATCCACTTCATTCAGTTTCAGAATGCTT 1194
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1138 GGTTCAAGAAACCAGAATTACTATTATCTCTTATCCACTTCATTCAGTTTCAGAATGCTT 1197
Query 1195 TTGAACTGGCTTCTTTCTTCTGGTTTTGGTGGCAATTTGGATACAATTCTTGCTTCCTAA 1254
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TTGAACTGGCTTCCTTCTTCTGGTTTTGGTGGCAATTTGGATACAATTCTTGCTTCCTAA 1257
Query 1255 GGAACCATTTACTTGTCTACTTGCGACTTATTCTAGGGTTTTCTGGACAATTTTTATGTA 1314
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GGAATCATTTACTTGTCTACTTGCGACTTATTCTAGGGTTTTCTGGACAATTTTTATGTA 1317
Query 1315 GCTACAGCACACTGCCACTCTATGCACTTGTCACTCAGATGGGAACAAACTACAAGGCAG 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GCTACAGCACACTGCCACTCTATGCACTTGTCACTCAGATGGGAACAAACTACAAGGCAG 1377
Query 1375 CATTGTTACCTCAAAGGGTAAGAGAGACAATTAATGGTTGGGGAAAAGCAACAAGACGGA 1434
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 1378 CATTGTTACCTCAAAGGGTTAGAGAGACAATTAATGGTTGGGGAAAAGCAACTAGAAGGA 1437
Query 1435 AAAGAAGACATGGTTTATATGGAGATGATTCAACTATTCGAACAGAAACAAGCACAATTG 1494
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1438 AAAGAAGACATGGGTTATATGGTGATGATTCAACTATTCGAACAGAAACAAGCACAATTG 1497
Query 1495 CATCTGTTGATGAATACAATGACCAGGTGCTTGATGTTTCCGAAACCTCTCCAGTTCAAG 1554
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1498 CATCTGTTGATGAATACAATGACCAGGTGCTTGATGTTTCCGAAACATCTCCAGTTCAAG 1557
Query 1555 ATAACGAGCTTGAGCTTCAGCTTATTCGCGGAGCTTGTGGAAATTCTAGTAGTGTTGAAA 1614
||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||
Sbjct 1558 GTAACGAGCTTGAGCTTCAGCTTATTCGCGGATCTTGTGAAAATTCTAGCAGTGTTGAAA 1617
Query 1615 CACCGATCTTGCGGCCTTGTGCTTCAATATCTTCAACGACTTTCTCGAGGCTACAGACAG 1674
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1618 CACCGATCTTGCGACCTTGTGCTTCAATATCTTCAACAACTTTCTCAAGGCTACAGACAG 1677
Query 1675 AAACAACAGACTCACTCTCAAGGTCATCCTCATTGCCAATGAGAAGAGAATGTTAAGAT 1733
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 AAACAACAGAATCACTCTCAAGGTCATCCTCATTGCCAATGAGAAGAGAATGTTAAGAT 1736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65020048215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5