BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26710.1
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472735 jgi|Araly1|472735|fgenesh2_kg.1__2689__AT1G26710.1 1175 0.0
Ahg921577 jgi|Araly1|921577|scaffold_102858.1 691 0.0
> Ahg472735 jgi|Araly1|472735|fgenesh2_kg.1__2689__AT1G26710.1
Length=817
Score = 1175 bits (636), Expect = 0.0
Identities = 759/819 (93%), Gaps = 6/819 (1%)
Strand=Plus/Plus
Query 1 AATTTTAAGGTGGAGAAAATGACAATACCAACATATAACCTTTTATGCATAGGATCATTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATTTTAAGGTGGAGAAAATGACAATACCAACATATAACCTTTTATGCATAGGATCATTC 60
Query 61 ATTTTCTTACTATGTTTCAGCATTACCTTTGGTCGCAAAAACCTACTAGACAAGCCCGGT 120
|| ||||||||||||||||||||||||||||||||||| |||||| ||| |||| ||||
Sbjct 61 ATGTTCTTACTATGTTTCAGCATTACCTTTGGTCGCAAGAACCTAGAAGATAAGCTCGGT 120
Query 121 GGCACTCTATATGC-CTCCAAACCTGTTGAAGCCGCCGAGCTTAGAGCCACTTTGGTTAC 179
| |||||||| ||| | |||||||||||||||| |||||||||||||| |||| |||||
Sbjct 121 GACACTCTATTTGCAC-CCAAACCTGTTGAAGCAACCGAGCTTAGAGCCGCTTTAGTTAC 179
Query 180 TAATACCAAAGCTAGAGACATTTCAAGTAATATTGGTTTGGGAGAGGTTGGAAGTCAAGA 239
|||| || |||||| ||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 180 TAATTCCGAAGCTACCGACATTTCAAGTAGTATTGGTTTGGGAGAAGTTGGAAGTCAAGA 239
Query 240 GATGCATCACACTTACATAGGAACAGGTGAA-GATTCAAGTCTTGGAAATAAACAAGACA 298
||||||||||| |||||||| |||| || || ||||| ||||| ||||||||||||||||
Sbjct 240 GATGCATCACATTTACATAGAAACAAGT-AAGGATTCGAGTCTCGGAAATAAACAAGACA 298
Query 299 ATATAAACTCTGTGCCTAGGAAGGTTATAAGAGGTATCGTTTCCATCTCATTCGCATTTC 358
||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 299 ATATAAACTCTATGCCTAGGAAGGTTATAAGGGGTATCGTTTCCATCTCATTCTCATTTC 358
Query 359 CTATCATCAAGATTCAGGTTCCTATTCCGAAGCCAAATATTACGGTGGCTGCCATAAACC 418
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTATCATCAAGATTGGGGTTCCTATTCCGAAGCCAAATATTACGGTGGCTGCCATAAACC 418
Query 419 AACTCGATGAAGAAGAGATGATTAAAGGCATTGTCATAACTCCAACAAAGACTAATGAGT 478
||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 419 AACTCAACGAAGAAGAGATGATTAAAGGCATCGTCATAACTCCAACGAAGACTAATGAGT 478
Query 479 TGTGTATTTCCCTTGGAAATTACGATGTAGAGCTCTCATACAGCTAAAAACAATTTCAAG 538
|||||||||||||||||||| ||| | ||||||||||||| ||||||||||||| |||||
Sbjct 479 TGTGTATTTCCCTTGGAAATGACGGTTTAGAGCTCTCATATAGCTAAAAACAATCTCAAG 538
Query 539 AGCCGTATGTCGCAGGCCCATTGCCAGTTTTCTAAGGGTTATTCTGGAGATGGAAGTTAG 598
|||||||| ||| ||||||||||||| || ||||||||||| |||||||| ||||| |
Sbjct 539 AGCCGTATATCGAAGGCCCATTGCCAACTTCCTAAGGGTTATGCTGGAGATTGAAGTGAC 598
Query 599 TATAAAACATATGACGAATTGATAAAGTTGATGGAAGTACttttttttttttGGACAAAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TATAAAACATATGACGAATTGATAAAGTTGATGGAAGTACTTTTTTTTTTTTGGACAAAG 658
Query 659 TACTTGATGGAAGTACTTAAGTTATGGTTCAAGAGACAAATAAGTAGTTGGTGACCAACG 718
|||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||
Sbjct 659 TACTTGATGGAAGTACTTGAGTTATGGTTTAAGAGACAAATAAGTTGTTGGTGACCAACG 718
Query 719 AGTATAAACAAAATATGTAGCCATCTTTAACAATGACAAAAGGATATATGTGAACCATTT 778
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 AGTATAAACAATATATGTAGCCATCATTAACAATGACAAAAGGATATATGTGAACCATTT 778
Query 779 T-GTAAT-ATCTATTTACTATGCTATAAAAACCTATGAT 815
| ||||| |||||||||||||||| ||| |||||||||
Sbjct 779 TTGTAATTATCTATTTACTATGCTGTAAGTACCTATGAT 817
> Ahg921577 jgi|Araly1|921577|scaffold_102858.1
Length=556
Score = 691 bits (374), Expect = 0.0
Identities = 473/521 (91%), Gaps = 6/521 (1%)
Strand=Plus/Plus
Query 7 AAGGTGGAGAAAATGACAATACCAACATATAAC-CTTTTATGCATAGGATCATTCATTTT 65
||||||||||||||||||| |||||||||| || |||||||||||| |||||||||| ||
Sbjct 12 AAGGTGGAGAAAATGACAACACCAACATAT-ACTCTTTTATGCATACGATCATTCATGTT 70
Query 66 CTTACTATGTTTCAGCATTACCTTTGGTCGCAAAAACCTACTAGACAAGCCCGGTGGCAC 125
||||||||||||||||||| ||||||||||||| |||||| ||| |||| ||||| |||
Sbjct 71 CTTACTATGTTTCAGCATTGCCTTTGGTCGCAAGAACCTAGAAGATAAGCTCGGTGACAC 130
Query 126 TCTATATGC-CTCCAAACCTGTTGAAGCCGCCGAGCTTAGAGCCACTTTGGTTACTAATA 184
||||| ||| | |||||||||||||||| |||||||||||||| |||| |||||||||
Sbjct 131 TCTATTTGCAC-CCAAACCTGTTGAAGCAACCGAGCTTAGAGCCGCTTTAGTTACTAATT 189
Query 185 CCAAAGCTAGAGACATTTCAAGTAATATTGGTTTGGGAGAGGTTGGAAGTCAAGAGATGC 244
|| |||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 190 CCGAAGCTACCGACATTTCAAGTAGTATTGGTTTGGGAGAAGTTGGAAGTCAAGAGATGC 249
Query 245 ATCACACTTACATAGGAACAGGTGAAGATTCAAGTCTTGGAAATAAACAAGACAATATAA 304
|||||| |||||||| |||| || ||||||| ||||| ||||||||||||||||||||||
Sbjct 250 ATCACATTTACATAGAAACAAGTAAAGATTCGAGTCTCGGAAATAAACAAGACAATATAA 309
Query 305 ACTCTGTGCCTAGGAAGGTTATAAGAGGTATCGTTTCCATCTCATTCGCATTTCCTATCA 364
||||||||||||||||| ||||||| |||| |||||||||||||||| ||||||||||||
Sbjct 310 ACTCTGTGCCTAGGAAGATTATAAGGGGTACCGTTTCCATCTCATTCTCATTTCCTATCA 369
Query 365 TCAAGATTCAGGTTCCTATTCCGAAGCCAAATATTACGGTGGCTGCCATAAACCAACTCG 424
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 370 TCAAGATTCAGGTTCCTATTCCGAAGCCAAATATTACGGTGGCTGACATAAACCAATTCA 429
Query 425 ATGAAGAAGAGATGATTAAAGGCATTGTCATAACTCCAACAAAGACTAATGAGTTGTG-T 483
||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| || |
Sbjct 430 ATGAAGAAGAGATGAGTAAAGGTATTGTCATAACTCCAACGAAGACTAATGAGTT-TGGT 488
Query 484 ATTTCCCTTGGAAATTACGATGTAGAGCTCTCATACAGCTA 524
||||||||||||||| ||| || ||||||| |||||||||
Sbjct 489 ATTTCCCTTGGAAATGACGGTGCAGAGCTCGGATACAGCTA 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30193350264
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5