BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26720.1
Length=510
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921577 jgi|Araly1|921577|scaffold_102858.1 734 0.0
Ahg472735 jgi|Araly1|472735|fgenesh2_kg.1__2689__AT1G26710.1 678 0.0
> Ahg921577 jgi|Araly1|921577|scaffold_102858.1
Length=556
Score = 734 bits (397), Expect = 0.0
Identities = 478/516 (93%), Gaps = 9/516 (2%)
Strand=Plus/Plus
Query 1 ATGACAACACCAACATATAAC-CTTTTATGCATAGGATCATTCATGTTTTTACTATGTTT 59
|||||||||||||||||| || |||||||||||| ||||||||||||| |||||||||||
Sbjct 24 ATGACAACACCAACATAT-ACTCTTTTATGCATACGATCATTCATGTTCTTACTATGTTT 82
Query 60 CAGCATTGGCTTTGGTCGCAAAAACCTACAAGACAAGCTCGGTGACACTCTATTTGC-CT 118
|||||||| |||||||||||| |||||| |||| ||||||||||||||||||||||| |
Sbjct 83 CAGCATTGCCTTTGGTCGCAAGAACCTAGAAGATAAGCTCGGTGACACTCTATTTGCAC- 141
Query 119 CCAAACCTGTTGAAGCAACCGAGCTTAGAGCCGCTTTGGTTTCTAACACCGAAGCTAGAG 178
||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| |
Sbjct 142 CCAAACCTGTTGAAGCAACCGAGCTTAGAGCCGCTTTAGTTACTAATTCCGAAGCTACCG 201
Query 179 ACATTTCAGGTAGTATTGGTTTGGGAGAGGTTGGAAGTCAAGAGATGCATCATATTTACA 238
|||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 202 ACATTTCAAGTAGTATTGGTTTGGGAGAAGTTGGAAGTCAAGAGATGCATCACATTTACA 261
Query 239 TAGAAACAGGTGAAGATTCAAGTCTTGTAAATAAACAAGACAATATAAACTCTATGCCTA 298
|||||||| || ||||||| ||||| | ||||||||||||||||||||||||| ||||||
Sbjct 262 TAGAAACAAGTAAAGATTCGAGTCTCGGAAATAAACAAGACAATATAAACTCTGTGCCTA 321
Query 299 GGAAGGTTATAAGGGGTACCGTTTCCATCTCATTCTCATTTCCTATCATCA-GAATTAAG 357
||||| ||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 322 GGAAGATTATAAGGGGTACCGTTTCCATCTCATTCTCATTTCCTATCATCAAGA-TTCAG 380
Query 358 GTTCCTATTCCGAAGCCAAATATTACGGTGGCTGAAAGAAACCAACTCAATGAAGAAGAG 417
||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 381 GTTCCTATTCCGAAGCCAAATATTACGGTGGCTGACATAAACCAATTCAATGAAGAAGAG 440
Query 418 AT---TAAAGGCATTGTCATAACTCCAACGAAGACTAATGAGTTTGGTCTTTCCCTTGGA 474
|| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 441 ATGAGTAAAGGTATTGTCATAACTCCAACGAAGACTAATGAGTTTGGTATTTCCCTTGGA 500
Query 475 AATGACGGTGCAGAGCTCGGATACAACTACCAATAA 510
||||||||||||||||||||||||| ||||||||||
Sbjct 501 AATGACGGTGCAGAGCTCGGATACAGCTACCAATAA 536
> Ahg472735 jgi|Araly1|472735|fgenesh2_kg.1__2689__AT1G26710.1
Length=817
Score = 678 bits (367), Expect = 0.0
Identities = 457/499 (92%), Gaps = 11/499 (2%)
Strand=Plus/Plus
Query 1 ATGACAACACCAACATATAACCTTTTATGCATAGGATCATTCATGTTTTTACTATGTTTC 60
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 19 ATGACAATACCAACATATAACCTTTTATGCATAGGATCATTCATGTTCTTACTATGTTTC 78
Query 61 AGCATTGGCTTTGGTCGCAAAAACCTACAAGACAAGCTCGGTGACACTCTATTTGC-CTC 119
|||||| |||||||||||| |||||| |||| ||||||||||||||||||||||| | |
Sbjct 79 AGCATTACCTTTGGTCGCAAGAACCTAGAAGATAAGCTCGGTGACACTCTATTTGCAC-C 137
Query 120 CAAACCTGTTGAAGCAACCGAGCTTAGAGCCGCTTTGGTTTCTAACACCGAAGCTAGAGA 179
|||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||
Sbjct 138 CAAACCTGTTGAAGCAACCGAGCTTAGAGCCGCTTTAGTTACTAATTCCGAAGCTACCGA 197
Query 180 CATTTCAGGTAGTATTGGTTTGGGAGAGGTTGGAAGTCAAGAGATGCATCATATTTACAT 239
||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 198 CATTTCAAGTAGTATTGGTTTGGGAGAAGTTGGAAGTCAAGAGATGCATCACATTTACAT 257
Query 240 AGAAACAGGTGAA-GATTCAAGTCTTGTAAATAAACAAGACAATATAAACTCTATGCCTA 298
||||||| || || ||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 258 AGAAACAAGT-AAGGATTCGAGTCTCGGAAATAAACAAGACAATATAAACTCTATGCCTA 316
Query 299 GGAAGGTTATAAGGGGTACCGTTTCCATCTCATTCTCATTTCCTATCATCA-GAATTAAG 357
|||||||||||||||||| |||||||||||||||||||||||||||||||| || || |
Sbjct 317 GGAAGGTTATAAGGGGTATCGTTTCCATCTCATTCTCATTTCCTATCATCAAGA-TTGGG 375
Query 358 GTTCCTATTCCGAAGCCAAATATTACGGTGGCTGAAAGAAACCAACTCAATGAAGAAGAG 417
|||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 376 GTTCCTATTCCGAAGCCAAATATTACGGTGGCTGCCATAAACCAACTCAACGAAGAAGAG 435
Query 418 AT--T-AAAGGCATTGTCATAACTCCAACGAAGACTAATGAGTT-TGGTCTTTCCCTTGG 473
|| | |||||||| ||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 436 ATGATTAAAGGCATCGTCATAACTCCAACGAAGACTAATGAGTTGTG-TATTTCCCTTGG 494
Query 474 AAATGACGGTGCAGAGCTC 492
|||||||||| |||||||
Sbjct 495 AAATGACGGTTTAGAGCTC 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18543616254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5