BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26740.1
Length=752
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472732 jgi|Araly1|472732|fgenesh2_kg.1__2686__AT1G26740.1 1085 0.0
Ahg908526 jgi|Araly1|908526|Al_scaffold_0002_1607 316 1e-85
> Ahg472732 jgi|Araly1|472732|fgenesh2_kg.1__2686__AT1G26740.1
Length=732
Score = 1085 bits (587), Expect = 0.0
Identities = 701/752 (93%), Gaps = 24/752 (3%)
Strand=Plus/Plus
Query 4 CTAGTCTTCACTTCCGTCAGCTATAGCTTTGGAGAAACTGCATCAATGGCGTTGAGATTG 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTAGTCTTCACTTCCGTCAGCTATAGCTTTGGAGAAACTGCATCAATGGCGTTGAGATTG 60
Query 64 ACATCGCTAAAACGCGCCGCGGTTGAGTCCTGTCGCATTTTGGAAACCCGAAGCTTAAGT 123
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 61 ACATCGCTAAAACGCGCCGCGGTTGAGTCCTGCCGCATTTTGGAAACCCGAAGCTTCAGC 120
Query 124 CATGTCGCTGCGATGCCTTCCCCCTTGAACGGAGCTTTTGATCGCCCGATTTCTATGCCG 183
|||||||||||||| || || |||||||||||||| || ||||| |||||||||||||||
Sbjct 121 CATGTCGCTGCGATTCCGTCGCCCTTGAACGGAGCATTCGATCGACCGATTTCTATGCCG 180
Query 184 CCGCTGGTTTTACCTGAGTTCGATCAGAATCAACCGGGTTTGATCGAAGAAAAGAGCTTC 243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 CCGCTGGTTTTACCTGAGTTCGATCAGAATCAACCGGGTTTGATCGATGAAAAGAGCTTC 240
Query 244 GGGTTCGGGCTTCCTAGTTTTGCTTTTAATGGATCCATGGAGCTAATGGCTGTGCCTAAG 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGGTTCGGGCTTCCTAGTTTTGCTTTTAATGGATCCATGGAGCTAATGGCTGTGCCTAAG 300
Query 304 AAGAAGATTTCTAAACACAAGAGAGGGATAAGAAATGGTCCAAAGGCTCTTAAGCCTGTT 363
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 AAGAAGATTTCTAAACACAAGAGAGGGATAAGAAATGGCCCAAAGGCTCTTAAGCCTGTT 360
Query 364 CCTGTGATCATCCGTTGCAGGAGTTGCGGGCGAGTCAAGCTGCCACATTTCTTCTGTTGC 423
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 CCTGTGATCATCCGTTGCAGGAGTTGCGGGCGAGTTAAGCTGCCACATTTCTTCTGTTGC 420
Query 424 AGCGGTGAGCGGCTAAACCCTA-CTGAGTAAGGCAATTCGAACAACTGGTCATGGTTTCC 482
|||||||||||||||||||||| | ||||||||||||||||||||||| ||| |||||||
Sbjct 421 AGCGGTGAGCGGCTAAACCCTAGC-GAGTAAGGCAATTCGAACAACTGATCAAGGTTTCC 479
Query 483 AATATGATTACTCCTTGTTGGATATCAAGAGG-ATAAAATCTTGGCTTTCTTAGTAGTAC 541
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 480 AATATGATTACTCCTTGTTGGATATCAAGAGGGA-AAAATCTTGGCTTTCTTAGTAGTAC 538
Query 542 ACTAGAATGATAAAAGACTTAGTTGATGCTGTTTTGGCAAATTATTGTATGCTGCAAGAT 601
|||||| |||| | ||||||||||||||||||||||| |||||||| |||||||||| ||
Sbjct 539 ACTAGAGTGATTATAGACTTAGTTGATGCTGTTTTGGAAAATTATTTTATGCTGCAATAT 598
Query 602 CAATATTCTCATGCTTCTCTTGACAAATTATGTTATTGTCATT--GCTTGTTGCAAAGTG 659
|||||||| |||| |||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 599 CAATATTC-CATGATTCTTTTGACAAATTATGTTATTGTCATTTTGCTTGTTGCAAAGTT 657
Query 660 TAGGATTATCTCATTCACTTTTATTTGTGCTCTTAGATTTGGATTCAACAGCTAAATATA 719
|||| | || || ||||||||||||||||||||||||||||||| ||
Sbjct 658 TAGG-T-AT---AT------------GTGCTCTTAGATTTGGATTCAACAGCTAAATCTA 700
Query 720 TTCGAAATGGATAAATATATTCACGTGAAACC 751
||| |||||||||| || ||||||||||||||
Sbjct 701 TTCTAAATGGATAACTAGATTCACGTGAAACC 732
> Ahg908526 jgi|Araly1|908526|Al_scaffold_0002_1607
Length=426
Score = 316 bits (171), Expect = 1e-85
Identities = 350/434 (81%), Gaps = 21/434 (5%)
Strand=Plus/Plus
Query 49 ATGGCGTTGAGATTGAC-ATCGCTAAAACGCGCCGCGGTTGAGTCCTGTCGCATTTTGGA 107
|||||||||| | |||| | ||||||||||||||| |||||| ||| | |||||||| ||
Sbjct 1 ATGGCGTTGAAACTGACGA-CGCTAAAACGCGCCGTGGTTGAATCCCGGCGCATTTTAGA 59
Query 108 AACCCGAAGCTT-AAGTCATGTCGCTGCGATGCCT-TCC-CCCTTGAACGGAGCTTTTGA 164
| ||||||||| || || || | ||||| || ||| ||||||||||| || | ||
Sbjct 60 ATTCCGAAGCTTCAA-CCACGTTTCCGCGAT--CTCTCCTCCCTTGAACGGCGCCATAGA 116
Query 165 TCGCCCGATTTCTAT-GCCGCCGCTGGTTTTACCTGAGTTCGATCAGAATCAACCGG-GT 222
|| | | | || | |||||||||||| ||||| ||||| ||||| ||| | ||| |
Sbjct 117 TCTCTCTACCGCT-TCGCCGCCGCTGGTCTTACCGGAGTTTTATCAGGATCTATCGGATT 175
Query 223 -TT-GATCGAAGAAAAGAGCTTCGGGTTCGGGCTTCCTAGTTTTGC-TTTT-AATGGATC 278
|| || || || |||| ||| | ||| | |||| | ||| | |||| ||||||
Sbjct 176 CTTCCATTGATGACAAGAATTTCAGATTC-TGTTTCC-CGATTTCCTTTTTCGGTGGATC 233
Query 279 CATGGAGCTAATGGCTGTGCCTAAGAAGAAGATTTCTAAACACAAGAGAGGGATAAGAAA 338
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 234 CATGGAGCTAATGGCTGTTCCCAAGAAGAAGATTTCTAAACACAAGAGAGGGATAAGAAA 293
Query 339 TGGTCCAAAGGCTCTTAAGCCTGTTCCTGTGATCATCCGTTGCAGGAGTTGCGGGCGAGT 398
||| |||||||| ||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct 294 TGGACCAAAGGCCCTTAAACCTACTCCTGTGATCATCCGTTGCAGGAGTTGTGGGCGAGT 353
Query 399 CAAGCTGCCACATTTCTTCTGTTGCAGCGGTGAGCGGCTAA-ACCCT-ACTGAGTAAGGC 456
|||||||||||||||| ||| ||||||||||||||| ||| ||| | | ||| || ||
Sbjct 354 TAAGCTGCCACATTTCTACTGCTGCAGCGGTGAGCGGGTAATACC-TGA-TGAACAAAGC 411
Query 457 AATTCGAACAACTG 470
||||| ||||||||
Sbjct 412 AATTCAAACAACTG 425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27715360659
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5