BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G26750.1 Length=879 Score E Sequences producing significant alignments: (Bits) Value Ahg472731 jgi|Araly1|472731|fgenesh2_kg.1__2685__AT1G26750.1 998 0.0 > Ahg472731 jgi|Araly1|472731|fgenesh2_kg.1__2685__AT1G26750.1 Length=807 Score = 998 bits (540), Expect = 0.0 Identities = 588/612 (96%), Gaps = 0/612 (0%) Strand=Plus/Plus Query 50 AAGTGAAGAAGCTCAGCAACAATGTCGTGGATGAAAGGTGATTTACTTTCCAAAACCAGG 109 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAGCGAAAAAGCTCAGCAACAATGTCGTGGATGAAAGGTGATTTACTTTCCAAAACCAGG 60 Query 110 AGGCTTGTTGGTGGCTTAGCTACACGAGAGCCTGTTTGGCTTAAAGCCATGGAAGCATCA 169 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 61 AGGCTTGTTGGTGGCTTAGCTACACGAGAGCCTGTTTGGCTTAAGGCCATGGAAGCTTCA 120 Query 170 CCACCTCCTGTGTTTCCTCGCTCCAATGGAAAAATCCAGAAGATTGTTCTCCCTGAGGAT 229 || |||||||||||||||||||| |||||||||||||||| |||||||||||| |||||| Sbjct 121 CCTCCTCCTGTGTTTCCTCGCTCTAATGGAAAAATCCAGAGGATTGTTCTCCCCGAGGAT 180 Query 230 CCTTACGTTCGTAAATTCGCTAATAAGCATCCTGGAACCAAAATTGATGACCCTGCCAAG 289 ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 181 CCTTATGTTCGTAAATTCGCCAATAAGCATCCTGGAACAAAAATTGATGACCCTGCCAAG 240 Query 290 ATATCAGCATTTATTCCAGATCAAGCACGTGTGTATGGTTGCCGGGTACTTGAATTGAAG 349 |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 241 ATATCAGCGTTTGTTCCAGATCAAGCACGTGTGTATGGTTGTCGGGTACTTGAATTGAAG 300 Query 350 GAGCATGGCATCAGTGAGGGTGACGCCATGTCTGTAGCTAATATGGAATATCTTTCAGAG 409 ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 301 GAGCATGGCATCAGTGAGGATGATGCCATGTCTGTAGCTAATATGGAATATCTTTCAGAG 360 Query 410 AGAAAGGAAATGAAGAAAGCATACAAACGCTTAAAGGAGCTTGCGGTAATGCAAGATAAG 469 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 361 AGAAAGGAAATGAAGAAAGCATACAAACGCTTAAAGGAGCTTGCGAAAATGCAAGATAAG 420 Query 470 GATCCACCTCCTAAACCGTATCCTAGTGCCAAGAAAGGGTTAATAACTCAATCGAAGACA 529 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 421 GATCCACCTCCTAAACCGTATCCTAGTGCCAAAAAAGGGTTAATAACTCAATCGAAGAAA 480 Query 530 TCCGCTAAGGATCGCTTCCAGACTCCTAGCGTCCGCAGGCTAGTTAACCAGTTGAAAAAT 589 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 481 TCTGCTAAGGATCGATTCCAGACTCCTAGCGTCCGCAGGCTAGTTAACCAGTTGAAAACT 540 Query 590 GAGAAAGATGTGTTGCTGCAAGACAGAACCGGAGGAAGTGCTAATCAGGATAATTGGATC 649 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 541 GAGAAAGATGTGTTGCTGCAGGACAGAACCGGAGGAAGTGCTAATCAGGATAATTGGATC 600 Query 650 GACGAATAAATT 661 |||||||||||| Sbjct 601 GACGAATAAATT 612 Score = 259 bits (140), Expect = 2e-68 Identities = 179/196 (91%), Gaps = 10/196 (5%) Strand=Plus/Plus Query 693 CTACTCATCCAATTTC-TTTGTAGAACTGGCTTTTTTCATATATGACATTCTTTGACTAC 751 |||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| Sbjct 613 CTACTCATCCAATTTCTTTTGTAGAACTGGC-TTTTTCATATATGACTTTCTTTGACTAC 671 Query 752 AAATGTTTTGCAACAAAACAAGTGTTATTTCCATTTGAATGTCTTTGTAATAATA-T--- 807 ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 672 AAATGATTTGCAACAAAACAAGTGTTATTTCCATTTGAGTGTCTTTGTAATAATAATATA 731 Query 808 ----CATTGGATGTTTCCTTCCATGAGGCAAGGAATTACAGAAAACCAAAATGGTTACTC 863 |||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 732 ATATCATTGGATGTTTTCTTCCATGAGGCAAGGAATTACAGAAAACCAAAATGGTTATTA 791 Query 864 TCTCTATTGATCCTAC 879 ||||||| |||||||| Sbjct 792 TCTCTATGGATCCTAC 807 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32556971118 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5