BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26750.1
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472731 jgi|Araly1|472731|fgenesh2_kg.1__2685__AT1G26750.1 998 0.0
> Ahg472731 jgi|Araly1|472731|fgenesh2_kg.1__2685__AT1G26750.1
Length=807
Score = 998 bits (540), Expect = 0.0
Identities = 588/612 (96%), Gaps = 0/612 (0%)
Strand=Plus/Plus
Query 50 AAGTGAAGAAGCTCAGCAACAATGTCGTGGATGAAAGGTGATTTACTTTCCAAAACCAGG 109
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGCGAAAAAGCTCAGCAACAATGTCGTGGATGAAAGGTGATTTACTTTCCAAAACCAGG 60
Query 110 AGGCTTGTTGGTGGCTTAGCTACACGAGAGCCTGTTTGGCTTAAAGCCATGGAAGCATCA 169
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 AGGCTTGTTGGTGGCTTAGCTACACGAGAGCCTGTTTGGCTTAAGGCCATGGAAGCTTCA 120
Query 170 CCACCTCCTGTGTTTCCTCGCTCCAATGGAAAAATCCAGAAGATTGTTCTCCCTGAGGAT 229
|| |||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct 121 CCTCCTCCTGTGTTTCCTCGCTCTAATGGAAAAATCCAGAGGATTGTTCTCCCCGAGGAT 180
Query 230 CCTTACGTTCGTAAATTCGCTAATAAGCATCCTGGAACCAAAATTGATGACCCTGCCAAG 289
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CCTTATGTTCGTAAATTCGCCAATAAGCATCCTGGAACAAAAATTGATGACCCTGCCAAG 240
Query 290 ATATCAGCATTTATTCCAGATCAAGCACGTGTGTATGGTTGCCGGGTACTTGAATTGAAG 349
|||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 ATATCAGCGTTTGTTCCAGATCAAGCACGTGTGTATGGTTGTCGGGTACTTGAATTGAAG 300
Query 350 GAGCATGGCATCAGTGAGGGTGACGCCATGTCTGTAGCTAATATGGAATATCTTTCAGAG 409
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGCATGGCATCAGTGAGGATGATGCCATGTCTGTAGCTAATATGGAATATCTTTCAGAG 360
Query 410 AGAAAGGAAATGAAGAAAGCATACAAACGCTTAAAGGAGCTTGCGGTAATGCAAGATAAG 469
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 AGAAAGGAAATGAAGAAAGCATACAAACGCTTAAAGGAGCTTGCGAAAATGCAAGATAAG 420
Query 470 GATCCACCTCCTAAACCGTATCCTAGTGCCAAGAAAGGGTTAATAACTCAATCGAAGACA 529
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 421 GATCCACCTCCTAAACCGTATCCTAGTGCCAAAAAAGGGTTAATAACTCAATCGAAGAAA 480
Query 530 TCCGCTAAGGATCGCTTCCAGACTCCTAGCGTCCGCAGGCTAGTTAACCAGTTGAAAAAT 589
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 TCTGCTAAGGATCGATTCCAGACTCCTAGCGTCCGCAGGCTAGTTAACCAGTTGAAAACT 540
Query 590 GAGAAAGATGTGTTGCTGCAAGACAGAACCGGAGGAAGTGCTAATCAGGATAATTGGATC 649
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGAAAGATGTGTTGCTGCAGGACAGAACCGGAGGAAGTGCTAATCAGGATAATTGGATC 600
Query 650 GACGAATAAATT 661
||||||||||||
Sbjct 601 GACGAATAAATT 612
Score = 259 bits (140), Expect = 2e-68
Identities = 179/196 (91%), Gaps = 10/196 (5%)
Strand=Plus/Plus
Query 693 CTACTCATCCAATTTC-TTTGTAGAACTGGCTTTTTTCATATATGACATTCTTTGACTAC 751
|||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 613 CTACTCATCCAATTTCTTTTGTAGAACTGGC-TTTTTCATATATGACTTTCTTTGACTAC 671
Query 752 AAATGTTTTGCAACAAAACAAGTGTTATTTCCATTTGAATGTCTTTGTAATAATA-T--- 807
||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 672 AAATGATTTGCAACAAAACAAGTGTTATTTCCATTTGAGTGTCTTTGTAATAATAATATA 731
Query 808 ----CATTGGATGTTTCCTTCCATGAGGCAAGGAATTACAGAAAACCAAAATGGTTACTC 863
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 732 ATATCATTGGATGTTTTCTTCCATGAGGCAAGGAATTACAGAAAACCAAAATGGTTATTA 791
Query 864 TCTCTATTGATCCTAC 879
||||||| ||||||||
Sbjct 792 TCTCTATGGATCCTAC 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32556971118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5