BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26760.1
Length=1792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912370 jgi|Araly1|912370|Al_scaffold_0001_2624 2460 0.0
Ahg472731 jgi|Araly1|472731|fgenesh2_kg.1__2685__AT1G26750.1 161 1e-38
> Ahg912370 jgi|Araly1|912370|Al_scaffold_0001_2624
Length=2931
Score = 2460 bits (1332), Expect = 0.0
Identities = 1540/1642 (94%), Gaps = 8/1642 (0%)
Strand=Plus/Plus
Query 1 CAATGAGAGGAGAGCAATTCGAGCTAGAGGAAGATAGAGACGGGCCACTGGAGCTGTTGC 60
||||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||
Sbjct 1292 CAATGGGAGGAGAGCAATTCGAGCTAGAGGAAGATCGAGACGGACCATTGGAGCTGTTGC 1351
Query 61 AGAGCTTGAGATCTAAAGCAACGGAGCTTCTTCTTCGAGAAGAATGGGAAGAATCTATAA 120
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1352 AGAGCTTGAGATCCAAAGCGACGGAGCTTCTTCTTCGGGAAGAATGGGAAGAATCTATAA 1411
Query 121 AAGTTTACACGGAGTTCATCGATCTCTCTCGGAGGCAAGTCTCAAGTACTGGTGGATCCG 180
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1412 AAGTTTACACGGAGTTCATCGATCTCTCTCGGAGGCAAGTCTCAAGAAATGGTGGATCCG 1471
Query 181 ACCCGGATCCGGATTCGATTGCTAAGCTCCGGAAATCTCTCTGTTTGGCTCTATGTAATC 240
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1472 ACCCGGATCCGGATTCGATTGCTAAGCTCCGGAGATCTCTCTGCTTGGCTCTATGTAATC 1531
Query 241 GAGCTGAGGCAAGAGCTAGGCTACGAGATTTTTTGGAAGCAATGAGGGATTGTGATCAAG 300
|||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1532 GAGCTGAGGCGCGAGCCAGGCTACGAGATTTCTTGGAAGCAATGAGGGATTGTGATCAAG 1591
Query 301 CACTTGAAATCGAGAAGACTCATTTCAAGACTCTTCTTTGTAAAGGTAAAGTTTTGCTTG 360
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 CACTTGAAGTCGAGAAGACCCATTTCAAGACTCTTCTTTGTAAAGGTAAAGTTTTGCTTG 1651
Query 361 GATTGAGCAAATACTCTTTGGCTTTGGAATGTTTTAAAACGGCTTTGCTCGATCCACAAG 420
|||||||||||||||| |||||||||||||| |||||||||||| |||||||||| ||||
Sbjct 1652 GATTGAGCAAATACTCATTGGCTTTGGAATGCTTTAAAACGGCTCTGCTCGATCCTCAAG 1711
Query 421 CGAGTGATAACTTGGAGACTGTTACTGTGTATATAGAGAAATGTAAGAAGCTTGAGTTTC 480
||||||||||||| ||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct 1712 CGAGTGATAACTTCGAGACTGTTACTGGGTACATGGAGAAATGTAAGAAGCTTGAGTTTC 1771
Query 481 AGGCAAAGACTGGAGCTTTTGATTTGTCTGATTGGATCTTAAGTGAGTTTCGTGGGAAAT 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1772 AGGCAAAGACTGGAGCTTTTGATTTGTCTGATTGGATCTTAAGTGGGTTTCGTGGGAGAT 1831
Query 541 GTCCTGAGCTTGCTGAGTTTATTGGGTCGATTGAGATTAAGAAATCTGAGCTTAGTGGGC 600
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1832 GTCCCGAGCTTGCTGAGTTTATTGGGTCGATTGAGATTAAGAAATCTGAGTTTAGTGGGC 1891
Query 601 GTGGATTGTTTGCTACGAAGAACATTGTTG-CTGGTACTTTGGTTTTAGTTACAAAGGCG 659
|||||||||||||||||||||| ||||||| | || |||| | |||||||||||||||||
Sbjct 1892 GTGGATTGTTTGCTACGAAGAATATTGTTGGCGGG-ACTTCGATTTTAGTTACAAAGGCG 1950
Query 660 GTTGCGATTGAGAGAGGGATCTTAGGAAATGGAGAGTGTGGGGAAAAAGCGCAGTTGATC 719
|||||||||||||||||||||||||| |||||||||| ||| || ||||||||||||||
Sbjct 1951 GTTGCGATTGAGAGAGGGATCTTAGGTAATGGAGAGTCTGGCGAGAAAGCGCAGTTGATA 2010
Query 720 ATGTGGAAGAACTTCGTTGAAGAGGTTACTGAATCCGTGAGAAAATGCGGTAGGACTCGT 779
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2011 ATGTGGAAGAATTTCGTTGAAGAGGTTACTGAATCCGTGAGGAAATGCGGTAGGACACGT 2070
Query 780 CGAGTTGTCTCCGCTTTGTCCACTGGACAAGGTGAAGATAGTCTGGAGATTCCTGAGATA 839
||||||||||||||||||||||||||||||| ||||| | |||||||||||| || |||
Sbjct 2071 CGAGTTGTCTCCGCTTTGTCCACTGGACAAGACGAAGACAATCTGGAGATTCCAGATATA 2130
Query 840 GCTCTGTTTAGACCTGATGAAGCATTTGAAACTTGTGGTGACTGGAAACAGAGTTTGGAT 899
||||| ||||| |||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 2131 GCTCTCTTTAGGCCTGATGAAGCATTTGAAACTTATGATGACTCGAAACAGAGTTTGGAT 2190
Query 900 ACAGAGAAGTTGTTGAGTATCTTGGATGTGAATTCTCTGGTGGAAGATGCGGTTTCAGGT 959
|| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 2191 ACGGAGAAGTTATTGAGTATCTTGGATGTGAATTCTCTGGTGGAAGATGCTGTTTCAGCT 2250
Query 960 AAAGTTATGGGGAAGAACAAAGAGTATTACGGTGTAGGGCTATGGACTTTAGCTTCATTC 1019
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2251 AAAGTTATGGGGAAGAACAAAGAGTATTACGGTGTAGGGCTATGGACTCTAGCTTCATTC 2310
Query 1020 ATCAACCACTCGTGTATCCCTAACGCAAGACGTCTTCACGTTGGAGACTACGTGATTGTT 1079
|| ||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 2311 ATTAACCATTCGTGTATCCCAAACGCAAGACGTCTCCATGTTGGAGACTACGTGATTGTT 2370
Query 1080 CATGCCTCGAGAGATATCAAAACAGGGGAAGAGATTAGCTTT-GCTTACTTTGATGTGCT 1138
|||||||| ||||| |||||| | ||||| ||||| | |||| |||||||| || |||||
Sbjct 2371 CATGCCTCCAGAGACATCAAAGCCGGGGAGGAGATCA-CTTTTGCTTACTTCGACGTGCT 2429
Query 1139 TTCTCCATTGGAAAAACGGAAAGAGATGGCTGAGTCATGGGGGTTTTGTTGCGGATGCAG 1198
||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 2430 TTCTCCATTGGAAAAGCGGAAAGAGATGGCTGAGTCATGGGGATTTCGTTGCGGATGCAG 2489
Query 1199 TAGATGCAAGTTTGAGAGTGTCTTGTATGCTACCAACCAGGAGGTTAGAGAGTTTGAAAT 1258
||||||||||||||||||| |||||| || ||||||||| ||| | |||||| |||||||
Sbjct 2490 TAGATGCAAGTTTGAGAGTCTCTTGTGTGTTACCAACCAAGAGATAAGAGAGCTTGAAAT 2549
Query 1259 GGGTTTAGAGAGAGGCGTAGATGCAGGGAA-CGCGGTTTATATGGTGGAGGAAGGGATGA 1317
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 2550 GGGTTTAGAGAGAGGCGTAGATGC-GGGAAACGCGGTTTATATGGTGGAGGAAGGGATGA 2608
Query 1318 AGAGATGGAAGGTAAAAGGGAAAGATAAAGGGTTGCTGAGAGCATCTTATTGGGGAGTTT 1377
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 2609 AGAGATGGAAGGTAAAAGGGAAGGATAAAGGGTTATTGAGAGCATCTTATTGGGGAATTT 2668
Query 1378 ATGATGAGATTTATAACTCAGAGAGACTTATGAAAAGGTGGGGAAGGAAGATACCAACAA 1437
||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||
Sbjct 2669 ATGATGAGATTTATAACTCGGAGAGATTTATGAAGAGGTGGGGAAGGAAGATACCAACAA 2728
Query 1438 TGGAAGTTGTGGTGGATAGTGTCTCTGATGTTGTTGGAAGTGATGAGAGATTGATGAAGA 1497
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2729 TGGAAGTTGTGGTGGATAGTGTGTCTGATGTTGTTGGAAGTGATGAGAGATTGATGAAGA 2788
Query 1498 TGGCTGTGGAAGGGATGATGAAGAAGCATGGAGGTTTCAGTAACATTGTGGAGATGGAGA 1557
|| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
Sbjct 2789 TGCCTGTGGAAGGGATGATGAAGAAGAATGGAGGTTGCAGTAACATTGTGGAGATGGATA 2848
Query 1558 AAATCAT-GAAGCTAGGGAAGGGGGTTTATGGCAAAGTGGTATCGAAAAAGAAGGCAATG 1616
|||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2849 AAAT-ATTGAAGCTAGGGAAGGGTGTTTATGGCAAAGTGGTATCGAAAAAGAAGGCAATG 2907
Query 1617 AAGACTCTTCTTGGCATAGAGT 1638
||||||||||||||| ||||||
Sbjct 2908 AAGACTCTTCTTGGCCTAGAGT 2929
> Ahg472731 jgi|Araly1|472731|fgenesh2_kg.1__2685__AT1G26750.1
Length=807
Score = 161 bits (87), Expect = 1e-38
Identities = 117/130 (90%), Gaps = 8/130 (6%)
Strand=Plus/Minus
Query 1670 GTAGGATCAATAGAGAGAGTAACCATTTTGGTTTTCTGTAATTCCTTGCCTCATGGAAGG 1729
|||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 807 GTAGGATCCATAGAGATAATAACCATTTTGGTTTTCTGTAATTCCTTGCCTCATGGAAGA 748
Query 1730 AAACATCCAATGATATTAT-T-A------CAAAGACATTCAAATGGAAATAACACTTGTT 1781
||||||||||||||||||| | | |||||||| ||||||||||||||||||||||
Sbjct 747 AAACATCCAATGATATTATATTATTATTACAAAGACACTCAAATGGAAATAACACTTGTT 688
Query 1782 TTGTTGCAAA 1791
||||||||||
Sbjct 687 TTGTTGCAAA 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67267372670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5