BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G26762.1

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949517 jgi|Araly1|949517|scaffold_801404.1                        307    5e-83


> Ahg949517 jgi|Araly1|949517|scaffold_801404.1
Length=500

 Score =  307 bits (166),  Expect = 5e-83
 Identities = 329/405 (81%), Gaps = 21/405 (5%)
 Strand=Plus/Plus

Query  2    TTCTCCTGCTTGACGGTTATATCTTTAGCCAAAAGGATCGGTGCTTCCAAGATC-TACAA  60
            ||||||||||||| |||| |||| |||||| ||||||| |||| ||  |||| | | | |
Sbjct  104  TTCTCCTGCTTGATGGTTCTATCCTTAGCCGAAAGGATTGGTGTTTTGAAGA-CATTCGA  162

Query  61   AGACACCTCGTGA-CAAAGATGCCATCGCTTCGACGAAGATGCTCCGTTTA-TG-CCTTT  117
            || ||||| || | |||| | || |||||||||||  | |||||||| ||| || || ||
Sbjct  163  AGTCACCTTGT-ATCAAAAAAGCTATCGCTTCGAC--A-ATGCTCCG-TTATTGTCC-TT  216

Query  118  GTAGCATACGGTTTGGCCCTCAAGAAAACATTCTTAAATGCTTGTTTTGCTTCTTTGAA-  176
            |||||| || ||||||| || |||||| |||||||| |||||||||||||||||||||| 
Sbjct  217  GTAGCAGACAGTTTGGCACTTAAGAAAGCATTCTTAGATGCTTGTTTTGCTTCTTTGAAG  276

Query  177  CAGTTTATTTTCCCAAAATTCCTTCTAG--T-GAGTGGTATGGATGATCAAGACTTGTCG  233
            |||||| | ||||||||||||| ||| |  | ||||  ||||||||||||||||||||||
Sbjct  277  CAGTTTCTCTTCCCAAAATTCCCTCTTGTTTGGAGTCCTATGGATGATCAAGACTTGTCG  336

Query  234  GTATTGCAAGGTTT-TACTTCCCGGCTTATAGTCCCCTTTGCCTTTGTGGTAGAGTTTGT  292
            |||||||||||||  | || |||| || |||||||||| | ||||||| | ||||||| |
Sbjct  337  GTATTGCAAGGTTCCTCCT-CCCGACTGATAGTCCCCTCTACCTTTGTCGAAGAGTTTAT  395

Query  293  AACCTTTGGGGTTACTATGAATGCGATCAAGCAAGAAG-TAGTGAAGCTTGTACTTGTAT  351
            |||| ||  ||||| |||  ||| | |||| ||||||| || ||| | |||||||||| |
Sbjct  396  AACCGTTCAGGTTATTATCCATGTGGTCAATCAAGAAGATATTGA-GATTGTACTTGTTT  454

Query  352  GTCGATCTCTTATGTGCTCTTTCTTTGATTTGTATCTTATCTATC  396
            || | |||||||| | ||| || |  |||||||| ||||||||||
Sbjct  455  GTTGGTCTCTTATATTCTCCTTGT--GATTTGTAACTTATCTATC  497



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19573817157


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5