BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26770.2
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472728 jgi|Araly1|472728|fgenesh2_kg.1__2682__AT1G26770.2 1271 0.0
Ahg476086 jgi|Araly1|476086|fgenesh2_kg.2__1216__AT1G69530.4 520 8e-147
Ahg484671 jgi|Araly1|484671|fgenesh2_kg.5__663__AT3G29030.1 167 1e-40
> Ahg472728 jgi|Araly1|472728|fgenesh2_kg.1__2682__AT1G26770.2
Length=805
Score = 1271 bits (688), Expect = 0.0
Identities = 768/806 (95%), Gaps = 8/806 (1%)
Strand=Plus/Plus
Query 3 AAGTAATTGATTTTATATCACCCATGTGCAGGTTGTTAACACAAGACGTAAACATGGGTC 62
||||||| || |||||||||||||| |||||||||||||||||||| ||||||||| |||
Sbjct 1 AAGTAATAGACTTTATATCACCCATTTGCAGGTTGTTAACACAAGAGGTAAACATGTGTC 60
Query 63 ATCTTGGGTTCTTAGTTATGATTATGGTAGGAGTCATGGCTTCTTCTGTGAGCGGCTA-- 120
||||||| ||| |||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 61 ATCTTGGATTCATAGTTATGGTTATGGTAGGAGTAATGGCTTCTTCTGTGAGCGGCTACG 120
Query 121 ----CGGTGGCGGTTGGATCAACGCTCACGCCACTTTTTACGGTGGTGGTGATGCTTCCG 176
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 121 GTGGCGGTGGCGGTTGGATCAACGCTCACGCCACTTTCTACGGTGGAGGCGATGCTTCCG 180
Query 177 GCACAATGGGTGGTGCTTGTGGATATGGTAATCTATATAGCCAAGGCTACGGGACGAGCA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 GCACAATGGGTGGTGCTTGTGGATATGGTAATCTATATAGCCAAGGCTACGGGACAAGCA 240
Query 237 CGGCGGCTCTAAGCACAGCTCTCTTCAACAATGGACTTAGCTGTGGTTCTTGCTTTGAGA 296
|||||||| | ||||| ||| | |||||||| |||||||| |||||||||||||||||||
Sbjct 241 CGGCGGCTTTGAGCACGGCTTTGTTCAACAACGGACTTAGTTGTGGTTCTTGCTTTGAGA 300
Query 297 TAAGATGTGAAAACGATGGTAAATGGTGTTTACCTGGCTCAATCGTTGTAACCGCTACAA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TAAGATGTGAAAACGATGGTAAATGGTGTTTACCTGGCTCAATCGTTGTAACCGCTACAA 360
Query 357 ACTTCTGCCCGCCAAATAACGCGTTAGCGAACAATAATGGCGGTTGGTGTAATCCTCCTC 416
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 ACTTCTGCCCGCCAAATAACGCGTTAGCGAACAATAATGGTGGTTGGTGTAATCCTCCTC 420
Query 417 TTGAACACTTTGACCTTGCTCAGCCTGTTTTTCAACGCATTGCTCAGTACAGAGCTGGAA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTGAACACTTTGACCTTGCTCAGCCTGTTTTTCAACGCATTGCTCAGTACAGAGCTGGAA 480
Query 477 TCGTCCCTGTTTCCTACAGAAGGGTTCCTTGCAGGAGAAGAGGAGGAATAAGATTCACGA 536
||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct 481 TCGTCCCTGTTTCCTACAGGAGTTTTCCCTGCAGGAGAAGAGGAGGAATAAGATTCACGA 540
Query 537 TAAACGGCCACTCATACTTCAACCTTGTGCTGATCACAAACGTCGGTGGTGCCGGAGACG 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 541 TAAACGGCCACTCATACTTCAACCTTGTGCTGATCACAAACGTCGGTGGTGCCGGAGATG 600
Query 597 TTCACTCGGCGGCGATCAAGGGTTCAAGAACAGTGT-GGCAAGCTATGTCAAGGAACTGG 655
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 601 TTCACTCGGCGGCGATCAAGGGTTCAAGAACAG-GTTGGCAAGCTATGTCAAGGAACTGG 659
Query 656 GGGCAAAATTGGCAAAGCAACTCTTACCTCAACGGTCAAGCACTTTCCTTTAAGGTCACC 715
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGACAAAATTGGCAAAGCAACTCTTACCTCAACGGTCAAGCACTTTCCTTTAAGGTCACC 719
Query 716 ACCAGCGACGGCCGCACAGTTGTCTCCTTCAACGCCGCTCCTGCCGGCTGGTCTTATGGC 775
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 720 ACCAGCGACGGCCGCATAGTTGTCTCCTACAACGCCGCTCCTGCCGGCTGGTCTTACGGC 779
Query 776 CAGACTTTTGCCGGTGGACAGTTCCG 801
||||||||||||||||||||||||||
Sbjct 780 CAGACTTTTGCCGGTGGACAGTTCCG 805
> Ahg476086 jgi|Araly1|476086|fgenesh2_kg.2__1216__AT1G69530.4
Length=1313
Score = 520 bits (281), Expect = 8e-147
Identities = 557/689 (81%), Gaps = 24/689 (3%)
Strand=Plus/Plus
Query 121 CGGTGGCGGTTGGATCAACGCTCACGCCACTTTTTACGGTGGTGGTGATGCTTCCGGCAC 180
||| || |||||| ||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 263 CGGAGGAGGTTGGGTCAACGCACACGCCACATTCTACGGTGGTGGTGATGCTTCCGGCAC 322
Query 181 AATGGGTGGTGCTTGTGGATATGGTAATCTATATAGCCAAGGCTACGGGACGAGCACGGC 240
|||||| ||||||||||| || || || ||||||||||||||||| || || | ||| ||
Sbjct 323 AATGGGAGGTGCTTGTGGTTACGGAAACCTATATAGCCAAGGCTATGGAACCAACACCGC 382
Query 241 GGCTCTAAGCACAGCTCTCTTCAACAATGGACTTA-GCTGTGGTTCTTGCTTTGAGATAA 299
|| |||||||| ||| | |||||||| || ||| | |||||| ||||||| |||||||
Sbjct 383 AGCGCTAAGCACGGCTTTGTTCAACAACGGT-TTAAGTTGTGGTGCTTGCTTCGAGATAA 441
Query 300 GATGTGAAAACGATGGTAAATGGTGTTTACCTGGCTCAATCGTTGTAACCGCTACAAACT 359
|||| |||||||||| ||||||||| | ||||||||||| || || || || |||||||
Sbjct 442 GATGCCAAAACGATGGAAAATGGTGTCTCCCTGGCTCAATTGTCGTCACAGCCACAAACT 501
Query 360 TCTGCCCGCCAAATAACGCGTTAGCGAACAATA-ATGGCGGTTGGTGTAATCCTCCTCTT 418
| |||||||| || ||||||||| ||||||| | || ||||||||||| |||||||
Sbjct 502 TTTGCCCGCCTAACAACGCGTTACCGAACAACGCA-GGAGGTTGGTGTAACCCTCCTCA- 559
Query 419 G-AACACTTTGACCT-TGCTCAGCCTGTTTTTCAACGCATTGCTCAGTACAGAGCTGGAA 476
| |||| ||||| || | ||||||| || |||||||| || ||||| |||||||| || |
Sbjct 560 GCAACATTTTGATCTCT-CTCAGCCCGTATTTCAACGTATCGCTCAATACAGAGCCGGCA 618
Query 477 TCGT-CCCTGTTTCCTACAGAAGGGTTCCTTGCAG-GAGAAGAGGAGGAATAAGATTCAC 534
| || ||| || | ||| |||| || || ||| | |||||||||||||||||| || ||
Sbjct 619 TTGTTCCC-GTCGCTTACCGAAGAGTGCCATGC-GTGAGAAGAGGAGGAATAAGGTTTAC 676
Query 535 GATAAACGGCCACTCATACTTCAACCTT-GTGCTGATCACAAACGTCGGTGGTGCCGGAG 593
||||||||| ||||| ||||||||| || || || || || |||||||| || |||||||
Sbjct 677 GATAAACGGACACTCTTACTTCAAC-TTAGTTCTTATTACTAACGTCGGAGGAGCCGGAG 735
Query 594 ACGTTCACTCGGCGGCGATCAAGGGTTCAAGAACAGTG-TGGCAAGCTATGTCAAGGAAC 652
| |||||||| | | | | |||||||||||||||| | ||||||||||||||||| |||
Sbjct 736 ATGTTCACTCAGTGATGGTTAAGGGTTCAAGAACAG-GATGGCAAGCTATGTCAAGAAAC 794
Query 653 TGGGGGCAAAATTGGCAAAGCAACTCTTACCTCAACGGTCAAGCACTTTCCTTTAAGGTC 712
||||| || || ||||| || ||||||||||| ||||| ||| | || || || || |||
Sbjct 795 TGGGGACAGAACTGGCAGAGTAACTCTTACCTAAACGGACAATCTCTCTCATTCAAAGTC 854
Query 713 ACCACCAGCGACGGCCGCAC-AGTTGTCTCCTT-CAACGCCGCTC-CTGCCGGCTGGTCT 769
||||| ||||| || || || | | ||||| | ||||| ||| | || |||||||||
Sbjct 855 ACCACAAGCGATGGTCGAACCACT-GTCTC-TAACAACGTGGCTAAC-GCAGGCTGGTCT 911
Query 770 TAT-GGCCAGACTTTTGCCGGTGGACAGT 797
| | |||||||| || |||| | |||||
Sbjct 912 T-TCGGCCAGACCTTCACCGGAGCACAGT 939
> Ahg484671 jgi|Araly1|484671|fgenesh2_kg.5__663__AT3G29030.1
Length=1195
Score = 167 bits (90), Expect = 1e-40
Identities = 170/208 (82%), Gaps = 8/208 (4%)
Strand=Plus/Plus
Query 491 TACAGAAGGGTTCCTTGCAGGAGAAGAGGAGGAATAAGATTCACGATAAACGGCCACTCA 550
||||||||||||| |||| |||||| || || ||||| |||||||| || |||||||||
Sbjct 665 TACAGAAGGGTTCGGTGCAAGAGAAGTGGCGGGATAAGGTTCACGATCAATGGCCACTCA 724
Query 551 TACTTCAACCTT-GTGCTGATCACAAACGTCGGTGGTGCCGGAGACGTTCACTCGG-CGG 608
||||| || ||| ||| || |||||||||| ||||| ||||| ||||| ||||||| |
Sbjct 725 TACTTTAA-CTTGGTGTTGGTCACAAACGTGGGTGGAGCCGGGGACGTACACTCGGTC-T 782
Query 609 CGAT-CAAGGGTTCAAGAACAGTGTGGCAAGCT-ATGTCAAGGAACTGGGGGCAAAATTG 666
| || ||||| || || ||| |||||| | |||||||| || ||||||||||||||
Sbjct 783 CAATGAAAGGG-TCGAGGACAAAATGGCAA-TTAATGTCAAGAAATTGGGGGCAAAATTG 840
Query 667 GCAAAGCAACTCTTACCTCAACGGTCAA 694
||||||||||||||| || || ||||||
Sbjct 841 GCAAAGCAACTCTTATCTTAATGGTCAA 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29735875260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5