BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26780.2
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335722 jgi|Araly1|335722|fgenesh1_pg.C_scaffold_1002287 1653 0.0
Ahg476090 jgi|Araly1|476090|fgenesh2_kg.2__1220__AT1G69560.1 429 2e-119
> Ahg335722 jgi|Araly1|335722|fgenesh1_pg.C_scaffold_1002287
Length=1071
Score = 1653 bits (895), Expect = 0.0
Identities = 1021/1081 (94%), Gaps = 11/1081 (1%)
Strand=Plus/Plus
Query 5 ATGTTTATAACGGAAAAACAAGTGTGGATGGATGAGATCGTCGCAAGAAGAGCTTCTTCT 64
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1 ATGTTTATAACGGAAAAACAAGTTTGGATGGATGAGATCGCCGCAAGAAGAGCTTCTTCT 60
Query 65 TCTTGGGACTTCCCTTTCAACGACATTAATATTCATCAGCATCATCATCGTCACTGCAAC 124
|||||||| ||||||||||||||| |||| | || ||||| |||||| ||||||
Sbjct 61 TCTTGGGATTTCCCTTTCAACGAC---AATA---A-CA--TTCATCGTCGTCATTGCAAC 111
Query 125 ACAAGTCATGAGTTTGAAATCTTGAAGAGTCC-TCTTGGAGATGTAGCGGTTCACGAAGA 183
||||||||||||||||||||||||||||| || || |||||||||||||| | |||||||
Sbjct 112 ACAAGTCATGAGTTTGAAATCTTGAAGAGCCCTTC-TGGAGATGTAGCGGCTAACGAAGA 170
Query 184 AGAGAGTAATAATAATAACCCTAATTTCAGTAACAGCGAGAGTGGTAAGAAGGAGACAAC 243
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 AGAGAGTAATAATCATAACCCTAATTTCAGTAACAGCGAGAGTGGTAAGAAGGAGACAAC 230
Query 244 AGATAGTGGTCAGTCTTGGTCCTCGTCGTCTTCAAAACCATCGGTCTTGGGGAGAGGACA 303
||||||||||||||||||||| || || ||||||||||| || |||||||||||||||||
Sbjct 231 AGATAGTGGTCAGTCTTGGTCTTCTTCATCTTCAAAACCGTCAGTCTTGGGGAGAGGACA 290
Query 304 TTGGAGACCAGCTGAAGATGTTAAACTCAAAGAGCTTGTCTCCATTTACGGCCCACAAAA 363
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 291 TTGGAGACCAGCTGAAGATGTTAAACTCAAAGAGCTTGTCTCCATTTACGGTCCACAGAA 350
Query 364 CTGGAACCTCATAGCTGAAAAGCTTCAAGGAAGATCTGGGAAGAGCTGTAGACTACGATG 423
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 351 CTGGAACCTCATAGCTGAAAAGCTTCAAGGAAGATCTGGAAAAAGCTGTAGACTACGATG 410
Query 424 GTTTAACCAATTGGACCCGAGGATAAACCGAAGAGCTTTCACAGAAGAAGAAGAGGAGAG 483
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 411 GTTTAACCAATTGGACCCGAGGATAAACCGAAGAGCTTTCACGGAGGAAGAAGAGGAGAG 470
Query 484 GCTGATGCAAGCACATAGGCTTTATGGTAACAAATGGGCAATGATTGCGAGGCTTTTCCC 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GCTGATGCAAGCACATAGGCTTTATGGTAACAAATGGGCAATGATTGCGAGGCTTTTCCC 530
Query 544 TGGTAGAACTGATAATTCAGTGAAGAACCATTGGCATGTTGTCATGGCTCGTAAGTATAG 603
||| || || |||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 531 TGGAAGGACGGATAATTCTGTCAAGAACCATTGGCATGTTGTCATGGCTCCTAAGTATAG 590
Query 604 AGAACACTCTTCTGCTTACCGTAGGAGAAAGCTTATGAGTAATAATCCACTTAAACCTCA 663
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 591 AGAACACTCTTCTGCTTATCGTAGGAGGAAGCTTATGAGTAATAATCCACTTAAACCTCA 650
Query 664 CCTCACCAATAATCATCATCCTAACCCTAACCCTAATTACCACTCTTTTATCTCCACTAA 723
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TCTCACTGATAATCATCATCCTAACCCTAACCCTAATTACCACTCTTTTATCTCCACTAA 710
Query 724 TCATTACTTCGCTCAGCCTTTCCCCGAGTTTAATTTGACTCATCACCTGGTTAATAATGC 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TCATTACTTCGCTCAGCCTTTCCCCGAGTTTAATTTGACTCATCACCTGGTTAATAATGC 770
Query 784 CCCTATCACGAGTGACCATAACCAGCTTGTGTTGCCTTTCCATTGCTTTCAAGGTTATGA 843
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 771 CCCTATCACGAGTGACCATAACCAGCTTGTTTTGCCTTTCCATTGCTTTCAAGGTTATGA 830
Query 844 GAACAATGAACCTCCGATGGTTGTGAGTATGTTTGGCAACCAAATGATGGTCGGCGATAA 903
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GAGCAATGAACCTCCGATGGTTGTGAGTATGTTTGGCAACCAAATGATGGTCGGCGATAA 890
Query 904 CGTTGGTGCCACGTCAGACGCGTTATGCAATATTCCGCACATTGACCCTAGTAACCAAGA 963
|| |||| |||||||||||||||||||||| ||||| ||||||||||||| | ||||||
Sbjct 891 TGTAGGTGACACGTCAGACGCGTTATGCAATTTTCCGTACATTGACCCTAGGAGCCAAGA 950
Query 964 GAAACCGGAGCCAAATGATGCAATGCATTGGATCGGAATGGACGCGGTAGATGAGGAGGT 1023
|||| |||| |||||||| |||||||||| |||||||||||| |||||||||||||||||
Sbjct 951 GAAAGCGGAACCAAATGAAGCAATGCATTTGATCGGAATGGAAGCGGTAGATGAGGAGGT 1010
Query 1024 GTTCGAAAAGGCTAAGCAGCAACCACATTTTTTCGATTTTCTTGGCTTGGGGACGGCGTG 1083
| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1011 GGTCGAGAAGGCTAAGCAGCAACCACATTTTTTCGATTTTCTTGGCTTGGGGACTGCGTG 1070
Query 1084 A 1084
|
Sbjct 1071 A 1071
> Ahg476090 jgi|Araly1|476090|fgenesh2_kg.2__1220__AT1G69560.1
Length=1050
Score = 429 bits (232), Expect = 2e-119
Identities = 305/341 (89%), Gaps = 2/341 (1%)
Strand=Plus/Plus
Query 295 GAGAGGACATTGGAGACCAGCTGAAGATGTTAAACTCAAAGAGCTTGTCTCCATTTACGG 354
|||||||||||||||||||||||||||| || |||||||| || ||| | | |||||
Sbjct 210 GAGAGGACATTGGAGACCAGCTGAAGATACCAAGCTCAAAGAACTAGTCGCTGTCTACGG 269
Query 355 CCCACAAAACTGGAACCTCATAGCTGAAAAGCTTCAAGGAAGATCTGGGAAGAGCTGTAG 414
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 270 CCCACAAAACTGGAACCTCATAGCTGAAAAGCTCCAAGGAAGATCCGGGAAAAGCTGTAG 329
Query 415 ACTACGATGGTTTAACCAATTGGACCCGAGGATAAACCGAAGAGC-TTTCACAGAAGAAG 473
||| ||||||||||||||| | |||||||||||||| ||||||| ||| ||||| ||||
Sbjct 330 ACTTCGATGGTTTAACCAACTAGACCCGAGGATAAATAGAAGAGCCTTT-ACAGAGGAAG 388
Query 474 AAGAGGAGAGGCTGATGCAAGCACATAGGCTTTATGGTAACAAATGGGCAATGATTGCGA 533
|||| |||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 389 AAGAAGAGAGGCTAATGCAAGCTCATAGGCTTTATGGTAACAAATGGGCGATGATAGCGA 448
Query 534 GGCTTTTCCCTGGTAGAACTGATAATTCAGTGAAGAACCATTGGCATGTTGTCATGGCTC 593
||||||||||||| || ||||||||||| ||||||||||||||||||||| | |||||||
Sbjct 449 GGCTTTTCCCTGGGAGGACTGATAATTCTGTGAAGAACCATTGGCATGTTATAATGGCTC 508
Query 594 GTAAGTATAGAGAACACTCTTCTGCTTACCGTAGGAGAAAG 634
| |||| |||||| || |||||||||||||||||||| |||
Sbjct 509 GCAAGTTTAGAGAGCAATCTTCTGCTTACCGTAGGAGGAAG 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40372169103
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5