BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G26799.1

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg313310 jgi|Araly1|313310|fgenesh1_pm.C_scaffold_1002090           765    0.0  


> Ahg313310 jgi|Araly1|313310|fgenesh1_pm.C_scaffold_1002090
Length=1434

 Score =  765 bits (414),  Expect = 0.0
 Identities = 470/497 (95%), Gaps = 3/497 (1%)
 Strand=Plus/Plus

Query  14    CAAGGAAAAATATTGTGTCAC-AAACCAGTAAACCCTTCCATGGCTTCCTCAACAAATAA  72
             ||| ||||||||||||||||| |||||  |||||||||||||||||||||||||||||||
Sbjct  939   CAAAGAAAAATATTGTGTCACAAAACCTTTAAACCCTTCCATGGCTTCCTCAACAAATAA  998

Query  73    CCACTTCAC-TTCCGTGCTTCTCTCATTTTTATTTATCCTAAAAAAGTTGTCATCTTTGG  131
             ||||||||| |||| |||||||||||||||||||||||| |||||| | |||||||||||
Sbjct  999   CCACTTCACTTTCC-TGCTTCTCTCATTTTTATTTATCCCAAAAAAATCGTCATCTTTGG  1057

Query  132   GAAATCATTCGTCCAACGATGGAATTTTGCTATTTTCACCTAAACATGTCGTGATCTACA  191
             ||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct  1058  GAAATCATTCGTCCATCGATGGAATTTTACTGTTTTCACCTAAACATGTCGTGATCTACA  1117

Query  192   ACACATTGACCTCACGTGCAACATTGGTCGTACATTGTGTGAATAAAGAGAAAGATTTGG  251
             ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct  1118  ACACATTGACCACACGTGCAACATTGGTCGTACATTGCATGAATAAAGAGAAAGATTTGG  1177

Query  252   GGATACAAAAGCTCCCAATCGGAGCTAGTTTCGATTTCAGGTTTCGTGTCAATCTTCGTA  311
             ||||| ||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||||
Sbjct  1178  GGATAAAAAAGCTCCCAATTGGAGCTAGTTTTGATTTCAGGTTTCATGTCAATTTTCGTA  1237

Query  312   AAACAACAACGTATAATTGCACTTTCGAGTGGCCCGGAAGTATAGAGAAATTTGATATTT  371
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  1238  AAACAACAACGTATAATTGCACTTTCGAGTGGCCCGGAAGTAAAGAGAAATTTGATATTT  1297

Query  372   TTAGGGCAGACAGAGACGACAATGAAACAAGTCCTATTGGGATATGTAGAGAATGTATAT  431
             ||||||||||||||||||||| || |||||||||||||||| | ||||||||||||||||
Sbjct  1298  TTAGGGCAGACAGAGACGACAGTGCAACAAGTCCTATTGGGGTCTGTAGAGAATGTATAT  1357

Query  432   GGTACATTTATGAACCAGCCCCTTGTCGTGAAAAACGTGACGGAGGCCATTCTATATGCT  491
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1358  GGTACATTTATGAACCAGCCCCTTGTCGTGAAAAACGTGACGGAGGCCATTCTATATGCT  1417

Query  492   TTACATGGGATCGATAG  508
             || ||||||||| ||||
Sbjct  1418  TTTCATGGGATCCATAG  1434



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20680329238


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5