BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26800.1
Length=1226
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472720 jgi|Araly1|472720|fgenesh2_kg.1__2674__AT1G26800.1 1480 0.0
> Ahg472720 jgi|Araly1|472720|fgenesh2_kg.1__2674__AT1G26800.1
Length=1177
Score = 1480 bits (801), Expect = 0.0
Identities = 1077/1201 (90%), Gaps = 55/1201 (5%)
Strand=Plus/Plus
Query 42 CGTTAATAATTTCTAGATCTTTCCACAACATTCATACGCAACTCCCTTAAATCTTGAAAC 101
|||||||||||||||||||||| | | || | ||||||| |||||||||||||||
Sbjct 1 CGTTAATAATTTCTAGATCTTT---C--C--GCA-A-GCAACTCTCTTAAATCTTGAAAC 51
Query 102 GACCAA-TTT-CTT----CA--AAACAA-TAGTTTG-TTTGCGATGGCGACAGAACAAGA 151
| |||| ||| ||| | |||||| || |||| |||| ||||||||||||||||||
Sbjct 52 G-CCAAGTTTCCTTAGAGAATCAAACAATTATTTTGTTTTGAGATGGCGACAGAACAAGA 110
Query 152 AGCTGAAGTTGGAACAGAGACATCCTCTGTTTCCGGAAGGTTTTTGAGGAACAGAGATTT 211
|||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||
Sbjct 111 AGCTGAAGTTGGAACAGAGACATCATCTACTTCCGGAAGATTTTTGAGGAACAGAGATTT 170
Query 212 ATATCTCTTCTTGCCTTTTCTCTTAGGCTTCTCTGATCAAGAATCATCAAACGGAGATGA 271
||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 171 ATATCTCTTCTTGCCTTTTCTCTTAGGTTTCTCTGATCAAGAACCATCAAACGGCGATGA 230
Query 272 TGATGATGTTGCTTCATCGCGTGAGAGAATCATTTTAGTCAACCCTTTTACACAAGGAAT 331
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TGATGATGTTGCTTCGTCGCGTGAGAGAATCATTTTAGTCAACCCTTTTACACAAGGAAT 290
Query 332 GATTGTGCTCGAAGGCTCATCAGGAATGAATCCTCTGCTTCGTAG-CTTACTGGAGTCAC 390
||| ||||||||||| ||||| ||||||||||||||||||||| | | ||||||||||||
Sbjct 291 GATCGTGCTCGAAGGATCATCGGGAATGAATCCTCTGCTTCGT-GACATACTGGAGTCAC 349
Query 391 GTGAGGAAGGTCGTCCTCCTGCGTCCAAGGCTTCCATCGATGCGATGCCGATCGTTGAGA 450
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 350 GTGAGGAAGGTCGTCCTCCTGCGTCCAAGGCTTCCATCGATGCGATGCCGATCGTTCAGA 409
Query 451 TTGATGGCTGTGAAGGAGAGTGTGTGATCTGTTTGGAGGAGTGGAAGTCCGAGGAGA-CG 509
| ||||| | |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 410 TCGATGGTTATGAAGGAGAGTGTGTGATCTGTTTGGAGGAGTGGAAGTCCGATGAGATC- 468
Query 510 GTGAAGGAGATGCCGTGTAAGCATAGGTTTCACGGTGGATGTATAGAGAAATGGTTAGGG 569
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 469 GTGAAGGAGATGCCGTGTAAGCATAGGTTTCATGGTGGATGTATAGAGAAATGGTTAGGG 528
Query 570 TTTCATGGGTCGTGTCCTGTTTGTAGGTACGAGATGCCTGTTGATGGAGATGAGATTGGG 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 529 TTTCATGGGTCGTGTCCTGTTTGTAGGTACGAGATGCCTGTTGATGGAGATGAGGTTGGG 588
Query 630 AAGAAAAGAAACGATGGGAATGAGATTTGGGTTAGGTTCAGTTTCAACGATGGTCGGAGA 689
||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||
Sbjct 589 AAGAAAAGAAACGATGGGAGTGAGATTTGGGTTAGGTTTAGTTTCAACGATGGTCCGAGA 648
Query 690 ATTAGAGATTTTTCTGCG-CAGGACGGTGGAAACAGTGATGGTGTTGAGTCCGAGAATTA 748
|||||||||| ||||| | ||||| |||||||||||||||||||||||||||||| ||||
Sbjct 649 ATTAGAGATTCTTCTG-GTCAGGAAGGTGGAAACAGTGATGGTGTTGAGTCCGAGGATTA 707
Query 749 GGATTT-ACATAAGAAGCTTTTGTaaaaaaaaCTTGTGCCtttttttGTTCTTGTT-CTG 806
|||||| |||||||||||||||||||||| |||||||||||||||||| | ||| ||
Sbjct 708 GGATTTTACATAAGAAGCTTTTGTAAAAA---CTTGTGCCTTTTTTTGTT-TGGTTTCTT 763
Query 807 GGAAAAGGTTGATGAACtttttttG--TCTTAAGATG-GTACAAAGTAAGCTCAGGAATC 863
||| | || | || |||||||||| | |||||||||||| |||||||
Sbjct 764 TTTGTTC-TTGTTTT-CTGTAAATGGCTCTTAAGATGTG-ACAAAGTAAGCTTAGGAATC 820
Query 864 TCCATAATCCTCATCAAACCCT-GAGGCATCACTTCTGATA-TCACACATAACAAAGAGa 921
|||||||||||||||||||||| | ||| || ||||||| | ||||||||||||||||||
Sbjct 821 TCCATAATCCTCATCAAACCCTTG-GGCGTCGCTTCTGA-AGTCACACATAACAAAGAGA 878
Query 922 aaaaaatgaaaaaaCAATCAAGAAAT-GTGCATAAGACCAA--A--CCACAAACACTTCT 976
||||||||||||| |||||||||| | | ||||||||||| | ||||||||||||||
Sbjct 879 AAAAAATGAAAAACCAATCAAGAA-TCGAACATAAGACCAACCAAACCACAAACACTTCT 937
Query 977 TGATTCCTTGATTAAGAGTTTTCAGAAGGACAAAGAAGATAGAGAC-GAACTTTCTGGCC 1035
|||||||||||||||||| ||||| ||||||||||||||| || || ||||||||| | |
Sbjct 938 TGATTCCTTGATTAAGAGGTTTCAAAAGGACAAAGAAGATGGAAACAGAACTTTCTAGTC 997
Query 1036 CACCAAGTTGATTAACAGCATCGATGAATCTGTTTTGAAGCTCACAACTCCATTTCAATC 1095
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 998 CACCAAGTTGATTAACAGCAGCGATGAATCTGTTTTGAAGCTCACAACTCCATCTCAATC 1057
Query 1096 TCTCCTTAGATTCCTTTGACTTATGGTTCTTATCATT-TACCATGTTCTGTAGTAACAAT 1154
||| ||| |||||||||||||| |||||||| | ||| | ||||||||||||||||||||
Sbjct 1058 TCTGCTTGGATTCCTTTGACTTCTGGTTCTTCTTATTAT-CCATGTTCTGTAGTAACAAT 1116
Query 1155 CAAGAAT----GATCCCAAACGCAAAAACATTACTCTGGCCACAATAAAGATTAAAAAGA 1210
||||||| |||| |||||||||||||| |||||||||||||| ||||||| ||||||
Sbjct 1117 CAAGAATATATGATCTCAAACGCAAAAACACTACTCTGGCCACAAAAAAGATTTAAAAGA 1176
Query 1211 A 1211
|
Sbjct 1177 A 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45785623317
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5