BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26820.1
Length=1045
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472718 jgi|Araly1|472718|fgenesh2_kg.1__2672__AT1G26820.1 1424 0.0
Ahg912353 jgi|Araly1|912353|Al_scaffold_0001_2607 174 1e-42
> Ahg472718 jgi|Araly1|472718|fgenesh2_kg.1__2672__AT1G26820.1
Length=927
Score = 1424 bits (771), Expect = 0.0
Identities = 879/928 (95%), Gaps = 20/928 (2%)
Strand=Plus/Plus
Query 4 CATCCTTCATTGGTTTTCGACAAATTTGATTCCCACAAATTATTTGATATCTTGAGGAAA 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CATCCTTCATTGGTTTTCGACAAATTTGATTCCCACAAATTATTTGATATCTTGAGGAAA 60
Query 64 TGAAATTCTTCATTTTTATTCTAGCGTTACAACAACTCTACGTACAAAGTTTCGCCCAAG 123
|||||||||| |||| | |||||||||||||||||||||||||||||||| ||||||| |
Sbjct 61 TGAAATTCTTTATTTGTCTTCTAGCGTTACAACAACTCTACGTACAAAGTGTCGCCCAGG 120
Query 124 ATTTCGATTTCTTCTACTTCGTTTTACAGTGGCCTGGAGCGTATTGTGATTCAAGACATA 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTTCGATTTCTTCTACTTCGTTTTACAGTGGCCTGGAGCGTATTGTGATTCAAGACATA 180
Query 184 GTTGTTGCTATCC-ACAAACCGGTAAACCAGCTGCAGATTTTGGAATTCACGGTCTTTGG 242
|||||||||| || | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GTTGTTGCTACCCGA-AAACCGGTAAACCAGCTGCGGATTTTGGAATTCACGGTCTTTGG 239
Query 243 CCTAACTACAAAACCGGTGGATGGCCGCAAAATTGTAATCCTGACAGTCGATTTGATGAT 302
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 CCTAACTACAAAACCGGTGGATGGCCGCAAAATTGTAATCCTGACAGTCAATTTGATGAT 299
Query 303 TTACGGGTTTCTGATCTGATGAGCGATTTACAAAGAGAATGGCCAACGTTGTCGTGTCCG 362
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTACGGGTGTCTGATCTGATGAGCGATTTACAAAGAGAATGGCCAACGTTGTCGTGTCCG 359
Query 363 AGCAATGATGGTATGAAGTTTTGGACACATGAGTGGGAGAAACACGGTACGTGCGCTGAG 422
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 360 AGCAATGATGGTATGAAGTTTTGGACACATGAGTGGGAGAAACACGGCACATGCGCTGAG 419
Query 423 TCCGAGCTTGACCAACACGATTACTTCGAAGCTGGTCTCAAGCTCAAACAGAAAGCTAAT 482
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 420 TCTGAGCTTGACCAACACGATTACTTTGAAGCCGGTCTCAAGCTCAAACAGAAAGCTAAT 479
Query 483 CTCCTTCATGCCCTTACCAATGCTGGGATCAAACCGGATGATAAATTTTATGAAATGAAA 542
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 CTCCTTCATGCCCTTACCAATGCCGGGATCAAACCGGATGATAAATTTTATGAAATGAAA 539
Query 543 GATATTGAGAATACGATCAAACAAGTAGTTGGGTTTGCTCCGGGCATTGAATGTAACAAA 602
||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 540 GATATTGAGAATACGATCAAAGAAGTAGTTGGATTTGCTCCAGGCATTGAATGTAACAAA 599
Query 603 GATTCGTCACATAATAGCCAACTCTATCAGATTTATTTATGTGTTGACACTTCGGCCTCC 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 600 GATTCGTCACATAATAGCCAACTCTATCAGATTTATTTATGTGTTGACACTTCGGCTTCC 659
Query 663 AAATTCATCAACTGTCCTGTTATGCCGCATGGTCGATGCGACTCTCGAGTTCAATTTCCC 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAATTCATCAACTGTCCTGTTATGCCGCATGGTCGATGCGACTCTCGAGTTCAATTTCCC 719
Query 723 AAGTTCTAAattttatggctacattttttctatgtatttacat-------tc-tacctat 774
|||||||||||||||||||| ||||||||||||||||||||| || ||| |||
Sbjct 720 AAGTTCTAAATTTTATGGCTGCATTTTTTCTATGTATTTACAAAAAAACATCATACTTAT 779
Query 775 taatttttatttgtgtttCTTGCAAAATTTA---GTTGTAATAAACAGTGTATA-AT--T 828
||||||||||||||||||||||||| ||||| |||||||||||||||||||| || |
Sbjct 780 TAATTTTTATTTGTGTTTCTTGCAACATTTATAAGTTGTAATAAACAGTGTATATATAAT 839
Query 829 -GGACGATACCCGTGATTTGCATGGTAAAAAGATGATAAAGGTTACTAATTTGTTTCTAG 887
||| ||||||| |||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 840 TGGATGATACCCTTGATTTGCGTAGTAAAAAGATGACAAAGGTTACTAATTTGTTTCTAG 899
Query 888 TTAAAATA---CTAATTTACAGTTCTCT 912
|||||||| ||||||||||||| |||
Sbjct 900 TTAAAATAGTACTAATTTACAGTTTTCT 927
> Ahg912353 jgi|Araly1|912353|Al_scaffold_0001_2607
Length=264
Score = 174 bits (94), Expect = 1e-42
Identities = 107/113 (95%), Gaps = 1/113 (1%)
Strand=Plus/Plus
Query 82 TTCTAGCGTTACAACAACTCTACGTACAAAGTTTCGCCCAAGATTTCGATTTCTTCTACT 141
|||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||
Sbjct 3 TTCTAGCGTTACAACAACTCTACGTA-AAAGTGTCGACCAGGATTTCGATTTCTTCTACT 61
Query 142 TCGTTTTACAGTGGCCTGGAGCGTATTGTGATTCAAGACATAGTTGTTGCTAT 194
|||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 62 TCGTTTTACAGTGGCCTGGAACTTATTGTGATTCAAGACATAGTTGTTGCTAT 114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38885375340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5