BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26840.1
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472711 jgi|Araly1|472711|fgenesh2_kg.1__2665__AT1G26840.1 1563 0.0
> Ahg472711 jgi|Araly1|472711|fgenesh2_kg.1__2665__AT1G26840.1
Length=1026
Score = 1563 bits (846), Expect = 0.0
Identities = 968/1026 (94%), Gaps = 11/1026 (1%)
Strand=Plus/Plus
Query 6 AAAAAATCTCTCACAGTGTCTGACTTTGGTTCTTTGTCTTGTAACAATCGCCGGAAAATT 65
|||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||
Sbjct 3 AAAAAATCTCTCACAGTGACTGACTTTGGTTCTTTATCTT-TAACAATCGCCGGAAAATT 61
Query 66 AAGGATATGGATATCTCCGACATAGGTAGGAAACTTAGTCTCGATAACAACAAGCTTTTA 125
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 62 AAGGATATGGATATCTCCGACATAGCTAGGAAACTTAGTCTCGATAACAACAAGCTTTTA 121
Query 126 ATCAGAAAAGCTGCAGAGATCCGCCGTCTTTGCGATGCTCAGTTCGATTCATCCATCATC 185
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 ATCCGAAAAGCTGCAGAGATCCGCCGTCTTTGCGATGCTCAGTTCGATTCATCCATCATC 181
Query 186 GGCGTTGGTGAGATCTGTAAAGCTGTGATTTGTCTAGAAATCGCCGCCACTAGGTTGCAG 245
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 182 GGCGTTGGTGAGATCTGTAAAGCTGTGATATGTCTAGAAATCGCCGCCTCTAGGTTGCAG 241
Query 246 ATTATATTCGATAGGCAAGCAGCGGTTAAATTGAGTGGTATGTCGGAAAAGGCTTATTCT 305
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 242 ATTATATTCGATAGACAAGCAGCGATTAAATTGAGTGGTATGTCGGAAAAGGCTTATTCT 301
Query 306 AGATCATTCAATAGTCTCCAAAACGTTATTGGGATCAAGATTAAGCTTAATGTAAGAGAA 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 AGATCATTCAATAGTCTCCAAAACGTTATTGGGATCAAGATTAAGCTTAATGTAAGAGAA 361
Query 366 TTGGCGGTTCAATTTGGCTGTGTTAGGGTAATCAAATCCGTGCAAAATGTGTTATCCTCG 425
||||||||||| ||||| |||||||| |||||||||| |||||||||||||||||||||
Sbjct 362 TTGGCGGTTCAGTTTGGTTGTGTTAGAATAATCAAATCTGTGCAAAATGTGTTATCCTCG 421
Query 426 TATAAGGAGAGGTTTCTTGCGTCACTACCAGCGTCGAGACGGGCTAATGCTGATTTTACT 485
||||||||| |||||||||||||||| ||||| ||||| ||||| |||||||| ||||||
Sbjct 422 TATAAGGAGCGGTTTCTTGCGTCACTGCCAGCATCGAGGCGGGCAAATGCTGACTTTACT 481
Query 486 AGACCTGTATTTACAGCTGCTGCTTTCTATTTGTGTGCTAAGAAGCAGAAGCTTAAGGTA 545
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 482 AGACCTGTATTTACAGCTGCTGCTTTTTATTTGTGCGCTAAAAAGCAGAAGCTTAAGGTA 541
Query 546 GATAAGCTTAGGTTGATTGAGGTTTGTGGTACATCAGAGTCTGAATTCTCTTGTGTCTCG 605
|||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 542 GATAAGCTTAGGCTGATTGAGGTTTGTGGAACATCAGAATCTGAATTCTCTTGTGTCTCA 601
Query 606 ACCTCCATGACAGATCTTTGTTTTGACTGTGTTGGGATCTCTAAGGAAAAGAAAGATGCA 665
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 602 ACCTCTATGACAGATCTTTGCTTTGACTGTGTTGGGATCTCAAAGGAAAAGAAAGATGCA 661
Query 666 AAAGACGTTAAAGGAAACAGAGACTTGCTTGATGTGTTACCTGGAAAGAGGAGACTAGAG 725
|||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 662 AAAGACGTGAAAGGAAACCGAGACTTGCTTGATGTGTTACCTGGTAAGAGGAGACTAGAG 721
Query 726 GATGGTGGATATTCATCTGGTGATGAGTCTTCATGTTACAAAAGACACAAGAAGATGGAG 785
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 722 GATGGTGGATATTCATCTGATGATGAGTCTTCATGTTACAAAAGACACAAGAAGATGGAA 781
Query 786 GAGGCTAAGTATGAGGACTGGAAATCTACAGTCGTTAATTCGATTAAGAAGAATCCAGAG 845
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 782 GAGGCTAAGTATGAGGACTGGAAATCTACAGTCGTTAATTCGATCAAGCAGAACCCAGAG 841
Query 846 AAAGGAACTAAGAGAGTTATACAGGCCAGTCTCAATTTCCCAAAGAAATCTGAGACCAAA 905
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 842 AAAGGAACTAAGAGAGTTATACAGGCCAGTCTCAATTTCCCAAAGAAGTCTGAGACAAAA 901
Query 906 GAGTTGCAAGTTGATTCATAACATTACACACATTCAGAGACTCAGATCCTGTT-A--TT- 961
|||||||||||||||||||||| ||||||||||||||||||||| ||| |||| | ||
Sbjct 902 GAGTTGCAAGTTGATTCATAACCTTACACACATTCAGAGACTCAAATCTTGTTCAAGTTA 961
Query 962 --GTTGTTTTCATCACATTTAAT--GTGTAAATGACAATTCTTGATAAG-AAtttttttt 1016
||||||||||||| || ||| |||||||||||||||||||| ||| ||| ||||||
Sbjct 962 TTGTTGTTTTCATCATATGAAATATGTGTAAATGACAATTCTTGAAAAGCAATGTTTTTT 1021
Query 1017 ttCCCC 1022
| ||||
Sbjct 1022 T-CCCC 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38008548249
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5