BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26870.1
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335709 jgi|Araly1|335709|fgenesh1_pg.C_scaffold_1002274 2037 0.0
> Ahg335709 jgi|Araly1|335709|fgenesh1_pg.C_scaffold_1002274
Length=1251
Score = 2037 bits (1103), Expect = 0.0
Identities = 1199/1246 (96%), Gaps = 3/1246 (0%)
Strand=Plus/Plus
Query 22 ATGGGAGATAGAAACAACGACGGTGATCAGAAAATGGAGGATGTATTGTTGCCCGGATTT 81
|||||||| |||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAGAGAGAACCGATGACGGTGATCAGAAAATGGAGGATGTATTGTTGCCCGGATTT 60
Query 82 AGGTTTCATCCAACCGACGAAGAGCTCGTAAGCTTCTACCTGAAGCGGAAGGTTCAACAC 141
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 61 AGGTTTCATCCAACCGACGAAGAACTCGTAAGCTTCTACTTGAAGCGGAAGGTTCAACAC 120
Query 142 AACCCTCTCTCCATTGAGCTCATAAGACAACTCGATATCTACAAATATGACCCCTGGGAT 201
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 121 AATCCTCTCTCCATTGAGCTCATAAGACAGCTCGATATCTACAAATACGACCCCTGGGAT 180
Query 202 CTTCCAAAGTTTGCGATGACGGGTGAAAAAGAATGGTACTTTTATTGTCCAAGGGACAGG 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCCAAAGTTTGCGATGACGGGTGAAAAAGAATGGTACTTTTATTGTCCAAGGGACAGG 240
Query 262 AAGTATAGGAACAGCTCGAGGCCAAACCGAGTGACCGGAGCTGGTTTTTGGAAAGCCACG 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGTATAGGAACAGCTCGAGGCCAAACCGAGTGACCGGAGCTGGTTTTTGGAAAGCCACG 300
Query 322 GGAACGGACCGGCCGATATACTCGTCAGAAGGAAACAAATGCATAGGTTTAAAGAAGTCC 381
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 301 GGAACGGATCGGCCGATATACTCGTCGGAGGGAAACAAATGCATAGGTTTAAAGAAGTCC 360
Query 382 TTAGTGTTCTACAAAGGAAGAGCAGCGAAAGGAGTTAAGACTGATTGGATGATGCATGAG 441
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 TTAGTGTTCTACAGAGGAAGAGCTGCGAAAGGAGTTAAGACTGATTGGATGATGCATGAG 420
Query 442 TTTCGTTTGCCTTCTCTCTCCGAACCATCTCCTCCTTCTAAGAGATTCTTCGACTCTCCT 501
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 421 TTTCGTTTGCCTTCTCTCTCCGAACCATCTCCTTCTTCTAAGAGATTCTTTGACTCTCCT 480
Query 502 GTCTCTCCCAACGATTCATGGGCTATATGCAGAATCTTCAAAAAGACCAACACAACGACC 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTCTCTCCCAACGATTCATGGGCTATATGCAGAATCTTCAAAAAGACCAACACAACGACC 540
Query 562 CTAAGAGCTCTCTCTCACTCTTTTGTTTCCTCGTTACCACCAGAAACAAGCACCGACACA 621
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTAAGAGCTCTCTCTCACTCCTTTGTTTCCTCGTTACCACCAGAAACAAGCACCGACACA 600
Query 622 ATGTCTAACCAAAAGCAATCAAACACATACCATTTTTCTTCAGACAAGATCCTCAAACCT 681
|| || ||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 601 ATCTCCGACCAAAAGCCATCAAACACATACCATTTTTCTTCAGACAAGATCCTCAAAACT 660
Query 682 AGCTCTCACTTCCAGTTTCACCATGAGAATATGAACACTCCCAAAACTAGTAATAGTACA 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGCTCTCACTTCCAGTTTCACCATGAGAATATGAACACTCCCAAAACTAGTAATAGTACA 720
Query 742 ACTCCATCCGTTCCCACTATAAGTCCCTTCTCTTACTTGGATTTCACTTCATACGACAAA 801
|||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 721 ACTCCATCCGTTGCCACTATAAGTCCCTTCTCTTACTTGGATTTAACTTCATATGACAAA 780
Query 802 CCCACCAACGTTTTCAATCCGGTTTCATGTTTAGACCAACAATACCTCACAAATCTCTTT 861
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCCACCAACGTTTTCAATCCGGTTTCATGTTTAGACCAACAATACCTCACAAATCTCTTT 840
Query 862 CTTGCCACACAAGAAACACAACCTCAGTTTCCCAGGCTCCCCTCGTCAAATGAAATCCCA 921
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 841 CTTGCCACACAAGAAACACAACCTCAGTTTCCCAAGCTCCCCTCGTCAAATGAAATCCCA 900
Query 922 TCGTTTCTGCTAAACACGTCTTCAGATTCGACCTTCTTGGGAGAATTCACGAGCCATATC 981
|||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 901 TCGTTTCTACTAAACACGTCATCAGATTCGACCTTCTTGGGAGAATACACGAGCCATATC 960
Query 982 GACCTCAGCGCAGTGTTGGCCCAAGAGCAATGTCCCCCGCTTGTAAGCCTACCACAGGAG 1041
|||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 961 GACCTCGGCGCAATGTTGGCCCAAGAGCAATGTCCTCCGCTAGTAAGCCTACCACAGGAG 1020
Query 1042 TATCAAGAGACGGGATTCGAAGGAAATGGTATAATGAAGAACATGCGTGGTTCCAATGAA 1101
|| |||||||| |||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1021 TACCAAGAGACAGGATTCGAAGGAAATGGTGTAGTGAAGAACATGCGTGGTTCCAATGAA 1080
Query 1102 GATCATCTTGGTGATCATTGCGACACACTTCGGTTTGATGATTTCACTTCAACAATTAAT 1161
||||||| ||| ||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 1081 GATCATCAAGGT---CATTGCGACACACTTAGGTTTGATGATTTCGCTTCAACAATTGAT 1137
Query 1162 GAGAACCATCGTCATCATCAAGACCTGAAACAGAACATGACATTGCTGGAGAGTTATTAT 1221
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1138 GAGAACCATCGTCATCATCAAGACCTGAAACAGAACATGACGTTGCTGGAGAGTTATTAT 1197
Query 1222 TCTTCTTTATCGTCCATCAATAGCGATTTGCCAGCTTGTTTCTCCA 1267
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TCTTCTTTATCGTCCATCAATAGCGATTTGCCAGCTTGTTTCTCCA 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47768015001
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5