BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G26880.1 Length=668 Score E Sequences producing significant alignments: (Bits) Value Ahg472716 jgi|Araly1|472716|fgenesh2_kg.1__2670__AT1G26880.1 1020 0.0 Ahg926260 jgi|Araly1|926260|scaffold_201821.1 422 2e-117 > Ahg472716 jgi|Araly1|472716|fgenesh2_kg.1__2670__AT1G26880.1 Length=598 Score = 1020 bits (552), Expect = 0.0 Identities = 584/599 (97%), Gaps = 3/599 (1%) Strand=Plus/Plus Query 1 ATATTCTTCGTTCCAAACGAAAACCCTAAAAGAGAAAAGGAGGCGAAAATGGTGCAGCGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATATTCTTCGTTCCAAACGAAAACCCTAAAAGAGAAAAGGAGGCGAAAATGGTGCAGCGT 60 Query 61 CTTGTTTACCGGTCGCGACACAGCTACGCCACCAAATCGAACCAGCACCGTATCGTCAAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTTGTTTACCGGTCGCGACACAGCTACGCCACCAAATCGAACCAGCACCGTATCGTCAAG 120 Query 121 ACTCCAGGAGGTAAATTGGTGTATCAAACCACAAAGAAGAGAGCTAGTGGCCCCAAATGT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACTCCAGGAGGTAAATTGGTGTATCAAACCACAAAGAAGAGAGCTAGTGGCCCCAAATGT 180 Query 181 CCTGTTACTGGCAAGCGTATTCAAGGAATCCCTCACTTGAGGCCCTCTGAGTACAAGAGG 240 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 181 CCTGTTACTGGCAAGCGTATTCAAGGAATCCCTCACTTGAGGCCCTCTGAATACAAGAGG 240 Query 241 TCAAGATTATCAAGAAACAGGAGGACTGTAAACCGAGCATACGGTGGAGTCTTGTCTGGT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCAAGATTATCAAGAAACAGGAGGACTGTAAACCGAGCATACGGTGGAGTCTTGTCTGGT 300 Query 301 TCTGCAGTCAGGGAAAGGATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAG 360 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCTGCAGTCAGGGAAAGGATTATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAG 360 Query 361 AAAGTGTTGAAACTCCAAAAGGCTAAGGAGAAAGTAGCCCCCAAGGCTTAAGCTTTT-AT 419 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 361 AAAGTGTTGAAACTCCAAAAGGCCAAGGAGAAAGTAGCCCCCAAGGCTTAAGCTTTTTAT 420 Query 420 GTTTTATTCTTCTCTGTTTTGGAATTATGGCTATGTTCAAGTGATAGGACTTGGTGCAGT 479 ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 421 GTTTTCTTCTTATCTGTTTTGGGATTATGGCTATGTTCAAGTGATAGGACTTGGTGCAGT 480 Query 480 CATGTGAGGACATCTATGTTACTCGA-CCAATTTTTAAGCTTTGTATTCTGTTATCAGTT 538 |||||||| ||||||||||||||| | ||||||||||||||||||||| |||| || ||| Sbjct 481 CATGTGAGAACATCTATGTTACTC-ATCCAATTTTTAAGCTTTGTATTGTGTTTTCGGTT 539 Query 539 CTTAACTTTGTCGACAATTCTCTTCTCTTCAGTTTTGGAATTGTTGAATTCATCTTTAA 597 |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 540 CTTAACTTTGTCGACAATTCTCTTCTCTTCAGTTTTGGTATTGTTGAATTCACCTTTAA 598 > Ahg926260 jgi|Araly1|926260|scaffold_201821.1 Length=498 Score = 422 bits (228), Expect = 2e-117 Identities = 322/368 (88%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 43 GCGAAAATGGTGCAGCGTCTTGTTTACCGGTCGCGACACAGCTACGCCACCAAATCGAAC 102 ||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||| Sbjct 18 GCGAAAATGGTGCAGCGTCTTGTTTACCGATCACGTCACAGCTACGCCACCAAATCAAAC 77 Query 103 CAGCACCGTATCGTCAAGACTCCAGGAGGTAAATTGGTGTATCAAACCACAAAGAAGAGA 162 |||||||| |||||||| |||||||||||||||||| |||||| ||||| ||||||||| Sbjct 78 CAGCACCGGATCGTCAAAACTCCAGGAGGTAAATTGACGTATCAGACCACTAAGAAGAGA 137 Query 163 GCTAGTGGCCCCAAATGTCCTGTTACTGGCAAGCGTATTCAAGGAATCCCTCACTTGAGG 222 |||||||| || |||||||| ||||| |||||||||||||| || || |||||||||||| Sbjct 138 GCTAGTGGACCTAAATGTCCCGTTACCGGCAAGCGTATTCAGGGTATTCCTCACTTGAGG 197 Query 223 CCCTCTGAGTACAAGAGGTCAAGATTATCAAGAAACAGGAGGACTGTAAACCGAGCATAC 282 || |||||||||||||| || | |||||||||||||| |||||||| ||||| || || Sbjct 198 CCATCTGAGTACAAGAGATCGCGTTTATCAAGAAACAGAAGGACTGTGAACCGTGCTTAT 257 Query 283 GGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGGATCATTCGGGCATTCCTTGTCGAA 342 ||||| || |||||||||||||| || |||||||| |||||||| || |||||||| || Sbjct 258 GGTGGGGTTTTGTCTGGTTCTGCTGTTAGGGAAAGAATCATTCGTGCTTTCCTTGTGGAG 317 Query 343 GAGCAAAAGATTGTGAAGAAAGTGTTGAAACTCCAAAAGGCTAAGGAGAAAG-TAGCCCC 401 |||||||||||||||||||| || ||||| || |||||||| ||||| |||| | || || Sbjct 318 GAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAAAAGGCAAAGGA-AAAGGTTGCTCC 376 Query 402 CAAG-GCT 408 |||| ||| Sbjct 377 CAAGAGCT 384 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24513035631 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5