BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26880.1
Length=668
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472716 jgi|Araly1|472716|fgenesh2_kg.1__2670__AT1G26880.1 1020 0.0
Ahg926260 jgi|Araly1|926260|scaffold_201821.1 422 2e-117
> Ahg472716 jgi|Araly1|472716|fgenesh2_kg.1__2670__AT1G26880.1
Length=598
Score = 1020 bits (552), Expect = 0.0
Identities = 584/599 (97%), Gaps = 3/599 (1%)
Strand=Plus/Plus
Query 1 ATATTCTTCGTTCCAAACGAAAACCCTAAAAGAGAAAAGGAGGCGAAAATGGTGCAGCGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATATTCTTCGTTCCAAACGAAAACCCTAAAAGAGAAAAGGAGGCGAAAATGGTGCAGCGT 60
Query 61 CTTGTTTACCGGTCGCGACACAGCTACGCCACCAAATCGAACCAGCACCGTATCGTCAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTGTTTACCGGTCGCGACACAGCTACGCCACCAAATCGAACCAGCACCGTATCGTCAAG 120
Query 121 ACTCCAGGAGGTAAATTGGTGTATCAAACCACAAAGAAGAGAGCTAGTGGCCCCAAATGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTCCAGGAGGTAAATTGGTGTATCAAACCACAAAGAAGAGAGCTAGTGGCCCCAAATGT 180
Query 181 CCTGTTACTGGCAAGCGTATTCAAGGAATCCCTCACTTGAGGCCCTCTGAGTACAAGAGG 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CCTGTTACTGGCAAGCGTATTCAAGGAATCCCTCACTTGAGGCCCTCTGAATACAAGAGG 240
Query 241 TCAAGATTATCAAGAAACAGGAGGACTGTAAACCGAGCATACGGTGGAGTCTTGTCTGGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCAAGATTATCAAGAAACAGGAGGACTGTAAACCGAGCATACGGTGGAGTCTTGTCTGGT 300
Query 301 TCTGCAGTCAGGGAAAGGATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAG 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTGCAGTCAGGGAAAGGATTATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAG 360
Query 361 AAAGTGTTGAAACTCCAAAAGGCTAAGGAGAAAGTAGCCCCCAAGGCTTAAGCTTTT-AT 419
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 361 AAAGTGTTGAAACTCCAAAAGGCCAAGGAGAAAGTAGCCCCCAAGGCTTAAGCTTTTTAT 420
Query 420 GTTTTATTCTTCTCTGTTTTGGAATTATGGCTATGTTCAAGTGATAGGACTTGGTGCAGT 479
||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTTTCTTCTTATCTGTTTTGGGATTATGGCTATGTTCAAGTGATAGGACTTGGTGCAGT 480
Query 480 CATGTGAGGACATCTATGTTACTCGA-CCAATTTTTAAGCTTTGTATTCTGTTATCAGTT 538
|||||||| ||||||||||||||| | ||||||||||||||||||||| |||| || |||
Sbjct 481 CATGTGAGAACATCTATGTTACTC-ATCCAATTTTTAAGCTTTGTATTGTGTTTTCGGTT 539
Query 539 CTTAACTTTGTCGACAATTCTCTTCTCTTCAGTTTTGGAATTGTTGAATTCATCTTTAA 597
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 540 CTTAACTTTGTCGACAATTCTCTTCTCTTCAGTTTTGGTATTGTTGAATTCACCTTTAA 598
> Ahg926260 jgi|Araly1|926260|scaffold_201821.1
Length=498
Score = 422 bits (228), Expect = 2e-117
Identities = 322/368 (88%), Gaps = 3/368 (1%)
Strand=Plus/Plus
Query 43 GCGAAAATGGTGCAGCGTCTTGTTTACCGGTCGCGACACAGCTACGCCACCAAATCGAAC 102
||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct 18 GCGAAAATGGTGCAGCGTCTTGTTTACCGATCACGTCACAGCTACGCCACCAAATCAAAC 77
Query 103 CAGCACCGTATCGTCAAGACTCCAGGAGGTAAATTGGTGTATCAAACCACAAAGAAGAGA 162
|||||||| |||||||| |||||||||||||||||| |||||| ||||| |||||||||
Sbjct 78 CAGCACCGGATCGTCAAAACTCCAGGAGGTAAATTGACGTATCAGACCACTAAGAAGAGA 137
Query 163 GCTAGTGGCCCCAAATGTCCTGTTACTGGCAAGCGTATTCAAGGAATCCCTCACTTGAGG 222
|||||||| || |||||||| ||||| |||||||||||||| || || ||||||||||||
Sbjct 138 GCTAGTGGACCTAAATGTCCCGTTACCGGCAAGCGTATTCAGGGTATTCCTCACTTGAGG 197
Query 223 CCCTCTGAGTACAAGAGGTCAAGATTATCAAGAAACAGGAGGACTGTAAACCGAGCATAC 282
|| |||||||||||||| || | |||||||||||||| |||||||| ||||| || ||
Sbjct 198 CCATCTGAGTACAAGAGATCGCGTTTATCAAGAAACAGAAGGACTGTGAACCGTGCTTAT 257
Query 283 GGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGGATCATTCGGGCATTCCTTGTCGAA 342
||||| || |||||||||||||| || |||||||| |||||||| || |||||||| ||
Sbjct 258 GGTGGGGTTTTGTCTGGTTCTGCTGTTAGGGAAAGAATCATTCGTGCTTTCCTTGTGGAG 317
Query 343 GAGCAAAAGATTGTGAAGAAAGTGTTGAAACTCCAAAAGGCTAAGGAGAAAG-TAGCCCC 401
|||||||||||||||||||| || ||||| || |||||||| ||||| |||| | || ||
Sbjct 318 GAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAAAAGGCAAAGGA-AAAGGTTGCTCC 376
Query 402 CAAG-GCT 408
|||| |||
Sbjct 377 CAAGAGCT 384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24513035631
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5