BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26890.1
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921560 jgi|Araly1|921560|scaffold_102841.1 710 0.0
Ahg921555 jgi|Araly1|921555|scaffold_102836.1 710 0.0
Ahg912339 jgi|Araly1|912339|Al_scaffold_0001_2593 612 2e-174
> Ahg921560 jgi|Araly1|921560|scaffold_102841.1
Length=1793
Score = 710 bits (384), Expect = 0.0
Identities = 700/844 (83%), Gaps = 55/844 (7%)
Strand=Plus/Plus
Query 206 GATGGCGTTATGTCTGGCCGATGGTGCCTAGACTCGAATTCAAAGAAGATGACAGCGAGA 265
||||||||||||||||| ||||||||||||||||||| |||||||| || | ||||||||
Sbjct 1 GATGGCGTTATGTCTGGACGATGGTGCCTAGACTCGAGTTCAAAGACGAAGGCAGCGAGA 60
Query 266 GCGTGGGGTGGTTTATTGAAAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATAGTT 325
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GCGTTGGGTGGTTTATTGAGAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATGGTT 120
Query 326 TGGTTGTGGAACTCGGTCCACATTGTCCTGTTGACGTAGATGTCGGAAAGTGGGTTGAGA 385
|| |||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 121 TGATTGTCGAAATCGGTCCACATTGTCCTTTTGACGTAGATGTTGGAAAGTGGGTTGAGA 180
Query 386 ACGTAGTTAATAGAGGTGT-GAAAGAGTTAGATTTCAATCTCCTCTGGACCGCAGAACCC 444
||| ||||||||||| ||| ||| || ||||||||||| ||||||||||||||||| |||
Sbjct 181 ACGCAGTTAATAGAGATGTTGAA-GATTTAGATTTCAAGCTCCTCTGGACCGCAGAGCCC 239
Query 445 ACAGGATTTCCTAAGTGCCTTTACACATGCAACACGCTCGTTGATTTAAGTCTATCCAAC 504
||| ||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 240 ACAAGATTTCCTAAGTGCCTTTACACATGTGACACGCTCGTTTATTTAACTCTATCCAAC 299
Query 505 AAGATTCTAGTGAACGTTTCTTCCCCTG-TTCGCCTACCATCTCTCTTA-ACTCTGAGTC 562
||||||||||| | ||||| ||||| | ||| | |||||||||||||| | | ||||||
Sbjct 300 CAGATTCTAGTGGATGTTTCCTCCCCGGCTTC-CTTACCATCTCTCTTATATT-TGAGTC 357
Query 563 TTCGCTTTGTGGTGTACAAAGACGAAGAATCTCTTGTTAGCCTTTTATCAAGCTCCCCTG 622
||| || |||||||| |||||||| | ||||||||||| ||||||||||| || |||
Sbjct 358 TTCACTACGTGGTGTATAAAGACGATGGCTCTCTTGTTAGGCTTTTATCAAGTTCTCCTA 417
Query 623 TTCTCAACTGCCTGAAG-GTGGATCGACATAAGGATGACAACTTGACAAAA-TTTACCGT 680
||||||| || |||| | ||| || ||||| || |||||||||||| ||| ||||||||
Sbjct 418 TTCTCAAGTGGCTGA-GTGTGCATAGACATGAGAATGACAACTTGA-AAACCTTTACCGT 475
Query 681 GAAAGTATCTACCTT-GAAACAGTTACATTATAAT-ACTACTCGGCGGAAGGATGGGGTA 738
|||||| ||| | || ||| || || ||||| || | || | ||| ||| ||| ||||
Sbjct 476 GAAAGTTTCTTCTTTAGAATCATTTT-ATTATGATGA-TAATTGGCTCAAGAATGAGGTA 533
Query 739 GAGGAT---GAG---GA--AG--AC-G-T-G--G---TAGAGGAAAATGAGGT--A-GAG 777
|||||| ||| || || | | | | | ||||||| |||||||| | |||
Sbjct 534 GAGGATAATGAGATTGATGAGGTAGAGGTTGATGCGGTAGAGGATAATGAGGTTGATGAG 593
Query 778 g-a-tg-atgatga--t-ga--t-gatga---tgatgatCTCAATAGATCCTTGGTAATA 825
| | || || |||| | || | ||||| ||||||||||||| |||| |||||||||
Sbjct 594 GTAGTGGATAATGAGGTAGAGGTTGATGAAGATGATGATCTCAATGGATCGTTGGTAATA 653
Query 826 GATTCCCCTGCATTAGAAATTTTAC-GCTTACGTAACGTTTTGGACTATTGCTTGATAGA 884
||||||||||| ||| ||| ||| | | ||| | | |||| ||||||||||||||||||
Sbjct 654 GATTCCCCTGCTTTAAAAAATTTGCAG-TTATATGAGGTTTGGGACTATTGCTTGATAGA 712
Query 885 GAATATTTCTTGCCTTCATATAG-CAAA-ACTCGGCTATGTTC-ATAACCCCGATCACAA 941
|||||| |||| |||| || || || | || | |||||| | ||||||||| ||||
Sbjct 713 GAATATGTCTTTCCTTGATG-AGGCATTCA-TCAACAATGTTCCA-AACCCCGATGACAA 769
Query 942 GTTTCTGAGATCTCTTTCTTCTGTCATACATATGTACTTGTATTTGACCAAGCCAATGGT 1001
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 770 GTTTCTGAGATCTCTTTCTTCTGTCATACATCTGTACTTGTATTTGACCAAATCAATGGT 829
Query 1002 TGCG 1005
|||
Sbjct 830 AGCG 833
Score = 551 bits (298), Expect = 5e-156
Identities = 623/772 (81%), Gaps = 54/772 (7%)
Strand=Plus/Plus
Query 376 TGGGTTGAGAACGTAGTTAATAGAGGTGTGAAAGAGTTAGATTTCAATCTCCTCTGGACC 435
||||||||||||| ||||||| | ||||||||| | ||||||||||| ||||||||||||
Sbjct 1008 TGGGTTGAGAACGCAGTTAATCGCGGTGTGAAATATTTAGATTTCAAGCTCCTCTGGACC 1067
Query 436 GCAGAACCCACAGGATTTCCTAAGTGCCTTTACACATGCAACACGCTCGTTGA-TTTAAG 494
||||| |||||| | | ||||||| ||||||||||||| |||| |||||| | |||||
Sbjct 1068 GCAGATCCCACAAGCTATCCTAAGAGCCTTTACACATGTGACACACTCGTT-AGTTTAAC 1126
Query 495 TCTATCCAACAAGATTCTAGTGAACGTTTCTTCCCCTG-TTCGCCTACCATCTCTCTTA- 552
|||||||||| ||||||||||| | ||||| ||||| | ||| | ||||||||||||||
Sbjct 1127 TCTATCCAACCAGATTCTAGTGGATGTTTCCTCCCCGGCTTC-CTTACCATCTCTCTTAT 1185
Query 553 ACTCTGAGTCTTCGCTTTGTGGTGTACAAAGACGAAGAATCTCTTGTTAGCCTTTTATCA 612
| | || |||||| || || ||||| ||||||||||| ||||||||||| |||||||||
Sbjct 1186 A-TTTGGGTCTTCACTACGTTGTGTATAAAGACGAAGACTCTCTTGTTAGGCTTTTATCA 1244
Query 613 AGCTCCCCTGTTCTCAACTGCCTGAAG-GTGGATCGACATAAGGATGACAACTTGACAAA 671
|| || ||| |||| || || ||| | ||| || ||||| ||||||||||||||| |||
Sbjct 1245 AGTTCTCCTATTCTGAAGTGGCTG-TGTGTGCATAGACATGAGGATGACAACTTGA-AAA 1302
Query 672 -ATTTACCGTGAAAGTATCTACCTTGAAACAGTTACATTATAATACTACTCGGCGGAAGG 730
|||||||||||||| ||| |||| | | | | |||||| || || | |
Sbjct 1303 CCTTTACCGTGAAAGTTTCTTCCTT-AGA-A--T-CATTAT-AT--TA-T---------G 1344
Query 731 ATGGGGTAGAGGATGAGGAAGACGTGGTAGAGGAAAATGAGGTAGAGgatgatgatgatg 790
|| | | | | |||||| || | ||||| ||| ||||||||||| | | | |||||
Sbjct 1345 AT-GAG-A-ATAATGAGGTTGATGAGGTAGTGGATAATGAGGTAGA-G-T--T--TGATG 1395
Query 791 atgatgatgatgatCTCAATAGATCCTTGGTAATAGATTCCCCTGCATTAGAAATTTT-A 849
| | ||||||||||||||| |||| ||||| ||||||||||| |||||| ||||||| |
Sbjct 1396 A--A-GATGATGATCTCAATGGATCGTTGGTTATAGATTCCCCAGCATTAAAAATTTTGA 1452
Query 850 CGCTTACGTAACGTTTTGGACTATTGCTTGATAGAGAATATTTCTTGCCTTCATATAGCA 909
|||| | | |||| |||||||||||||||||||||||| |||| |||| || | ||
Sbjct 1453 -ACTTATATGAGGTTTGGGACTATTGCTTGATAGAGAATATGTCTTTCCTTGATGTGGC- 1510
Query 910 AAAC-TCGGCTATGTTCATAACCCCGATCACAAGTTTCTGAGATCTCTTTCTTCTGTCAT 968
| | || || |||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 1511 ATTCATCAGCAATGTTCCTTACCCCGATGACAAGTTTCTGAGATCTCTTTCTTCTGTCAT 1570
Query 969 ACATATGTACTTG-TATTTGACCAAGCCAATGGTTGCGTGGTGTAACACCATCAAGTTCT 1027
|||| ||||||| | ||| ||||| |||||||||| || |||| | ||||| ||||||
Sbjct 1571 ACATCTGTACTTACTGTTT-ACCAAATCAATGGTTGCATGCTGTAGCGCCATCGAGTTCT 1629
Query 1028 CTCGGCTCTTGGAGTTTTATTTTGTTCCAAGCA-A-TTTGGTAGATTGGTTGGAA-CCAC 1084
| |||||| | |||||||| ||| ||||| | | | |||||||||||| ||| | ||||
Sbjct 1630 CCCGGCTCATAGAGTTTTACTTTCTTCCA-G-ATAGTTTGGTAGATTGATTG-ATGCCAC 1686
Query 1085 TTATGTATTTGCTTCAAAATTCTCCTAAACT-ACAAATTCTTACGATTGACA 1135
|||||| |||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 1687 TTATGTTTTTGCTTCAAAATTCTCCTAAACTTA-AAACTCTTACGATTGACA 1737
> Ahg921555 jgi|Araly1|921555|scaffold_102836.1
Length=1316
Score = 710 bits (384), Expect = 0.0
Identities = 700/844 (83%), Gaps = 55/844 (7%)
Strand=Plus/Plus
Query 206 GATGGCGTTATGTCTGGCCGATGGTGCCTAGACTCGAATTCAAAGAAGATGACAGCGAGA 265
||||||||||||||||| ||||||||||||||||||| |||||||| || | ||||||||
Sbjct 1 GATGGCGTTATGTCTGGACGATGGTGCCTAGACTCGAGTTCAAAGACGAAGGCAGCGAGA 60
Query 266 GCGTGGGGTGGTTTATTGAAAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATAGTT 325
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GCGTTGGGTGGTTTATTGAGAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATGGTT 120
Query 326 TGGTTGTGGAACTCGGTCCACATTGTCCTGTTGACGTAGATGTCGGAAAGTGGGTTGAGA 385
|| |||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 121 TGATTGTCGAAATCGGTCCACATTGTCCTTTTGACGTAGATGTTGGAAAGTGGGTTGAGA 180
Query 386 ACGTAGTTAATAGAGGTGT-GAAAGAGTTAGATTTCAATCTCCTCTGGACCGCAGAACCC 444
||| ||||||||||| ||| ||| || ||||||||||| ||||||||||||||||| |||
Sbjct 181 ACGCAGTTAATAGAGATGTTGAA-GATTTAGATTTCAAGCTCCTCTGGACCGCAGAGCCC 239
Query 445 ACAGGATTTCCTAAGTGCCTTTACACATGCAACACGCTCGTTGATTTAAGTCTATCCAAC 504
||| ||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 240 ACAAGATTTCCTAAGTGCCTTTACACATGTGACACGCTCGTTTATTTAACTCTATCCAAC 299
Query 505 AAGATTCTAGTGAACGTTTCTTCCCCTG-TTCGCCTACCATCTCTCTTA-ACTCTGAGTC 562
||||||||||| | ||||| ||||| | ||| | |||||||||||||| | | ||||||
Sbjct 300 CAGATTCTAGTGGATGTTTCCTCCCCGGCTTC-CTTACCATCTCTCTTATATT-TGAGTC 357
Query 563 TTCGCTTTGTGGTGTACAAAGACGAAGAATCTCTTGTTAGCCTTTTATCAAGCTCCCCTG 622
||| || |||||||| |||||||| | ||||||||||| ||||||||||| || |||
Sbjct 358 TTCACTACGTGGTGTATAAAGACGATGGCTCTCTTGTTAGGCTTTTATCAAGTTCTCCTA 417
Query 623 TTCTCAACTGCCTGAAG-GTGGATCGACATAAGGATGACAACTTGACAAAA-TTTACCGT 680
||||||| || |||| | ||| || ||||| || |||||||||||| ||| ||||||||
Sbjct 418 TTCTCAAGTGGCTGA-GTGTGCATAGACATGAGAATGACAACTTGA-AAACCTTTACCGT 475
Query 681 GAAAGTATCTACCTT-GAAACAGTTACATTATAAT-ACTACTCGGCGGAAGGATGGGGTA 738
|||||| ||| | || ||| || || ||||| || | || | ||| ||| ||| ||||
Sbjct 476 GAAAGTTTCTTCTTTAGAATCATTTT-ATTATGATGA-TAATTGGCTCAAGAATGAGGTA 533
Query 739 GAGGAT---GAG---GA--AG--AC-G-T-G--G---TAGAGGAAAATGAGGT--A-GAG 777
|||||| ||| || || | | | | | ||||||| |||||||| | |||
Sbjct 534 GAGGATAATGAGATTGATGAGGTAGAGGTTGATGCGGTAGAGGATAATGAGGTTGATGAG 593
Query 778 g-a-tg-atgatga--t-ga--t-gatga---tgatgatCTCAATAGATCCTTGGTAATA 825
| | || || |||| | || | ||||| ||||||||||||| |||| |||||||||
Sbjct 594 GTAGTGGATAATGAGGTAGAGGTTGATGAAGATGATGATCTCAATGGATCGTTGGTAATA 653
Query 826 GATTCCCCTGCATTAGAAATTTTAC-GCTTACGTAACGTTTTGGACTATTGCTTGATAGA 884
||||||||||| ||| ||| ||| | | ||| | | |||| ||||||||||||||||||
Sbjct 654 GATTCCCCTGCTTTAAAAAATTTGCAG-TTATATGAGGTTTGGGACTATTGCTTGATAGA 712
Query 885 GAATATTTCTTGCCTTCATATAG-CAAA-ACTCGGCTATGTTC-ATAACCCCGATCACAA 941
|||||| |||| |||| || || || | || | |||||| | ||||||||| ||||
Sbjct 713 GAATATGTCTTTCCTTGATG-AGGCATTCA-TCAACAATGTTCCA-AACCCCGATGACAA 769
Query 942 GTTTCTGAGATCTCTTTCTTCTGTCATACATATGTACTTGTATTTGACCAAGCCAATGGT 1001
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 770 GTTTCTGAGATCTCTTTCTTCTGTCATACATCTGTACTTGTATTTGACCAAATCAATGGT 829
Query 1002 TGCG 1005
|||
Sbjct 830 AGCG 833
> Ahg912339 jgi|Araly1|912339|Al_scaffold_0001_2593
Length=549
Score = 612 bits (331), Expect = 2e-174
Identities = 461/521 (88%), Gaps = 19/521 (4%)
Strand=Plus/Plus
Query 892 TCTTGCCTTCATATAGCAAAAC-TCGGCTATGTTCATAACCCCGATCACAAGTTTCTGAG 950
||||||||| || | || | | ||||| |||||||||||| |||| ||||||| |||||
Sbjct 4 TCTTGCCTTAATGTGGC-ACGCATCGGCAATGTTCATAACCTCGATGACAAGTTGCTGAG 62
Query 951 ATCTCTTTCTTCTGTCATACATATGTACTTGTATTTGACCAAGCCAATGGTTGCGT-GGT 1009
|||||||||||||||||||||| ||||||||| |||||| || |||||||||| | | |
Sbjct 63 ATCTCTTTCTTCTGTCATACATCTGTACTTGTGTTTGACTAAATCAATGGTTGC-TAGCT 121
Query 1010 GTAACACCATCAAGTTCTCTCGGCTCT-TGGAGTTTT-ATTTTGTTCCAAGCAATT-TGG 1066
||||| ||||||||||||||||||| | | ||||||| |||| ||||||| || | |
Sbjct 122 GTAACGCCATCAAGTTCTCTCGGCT-TATAGAGTTTTGCTTTT-TTCCAAGTTGTTAT-G 178
Query 1067 TAGATTGGTTGGAACCACTTATG-TATTTGCTTCAAAATTCTCCTAAACTACAAATTCTT 1125
||||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||| ||||
Sbjct 179 TAGATTGGTTGGAACCACTTATGATATTT-CTTCAAATTTCTCCTAAACTAAAAACTCTT 237
Query 1126 ACGATTGACACTGATTCTAC--GTGTCTCCCACCTTCATGGAACCAGCCGAGTTCTTCTA 1183
|||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 238 ACGATTGACACTGA-T-TACGGGTGTCTCCCACCTTCGTGGAACCAGCCGAGTTCTTCTA 295
Query 1184 CTATTCCCGAATGCTTGTTGTCTCATTTACAGATCTTTAGGTGGGGAGGCTATGGAGGAA 1243
| |||||||||||||| ||||||||| |||||||| ||||| |||| ||| ||||||
Sbjct 296 C---TCCCGAATGCTTGTCATCTCATTTAGAGATCTTTGGGTGGAGAGGGTATCGAGGAA 352
Query 1244 GAGAAGATGAGAAATAACTAATGACATACATTCTCGCTAACTCAAAGTGTTTAAAGAGAG 1303
||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 353 GAGAAGATGCGAAACAACTATTGACATACATTCTCGCTAACTCAAAGTGTTTAAAGACAG 412
Query 1304 TGGCGATCTTTCTCTTAGCAACCTGCAATCTTGAAGAGACACAAATGGAGTTAGAATCTA 1363
||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 413 TGGGGATCTTTCTCTTAGCAACCTGCAATCTTGAAGAGACACAAAAGGAGTTACAATCTA 472
Query 1364 TGCCTAGGAACTCAACATCATCTCAACTTCTAACCTCCTCC 1404
|||||||||| ||||||||||| ||||||||||||||||||
Sbjct 473 TGCCTAGGAATTCAACATCATCCCAACTTCTAACCTCCTCC 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53402523490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5