BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G26890.1 Length=1428 Score E Sequences producing significant alignments: (Bits) Value Ahg921560 jgi|Araly1|921560|scaffold_102841.1 710 0.0 Ahg921555 jgi|Araly1|921555|scaffold_102836.1 710 0.0 Ahg912339 jgi|Araly1|912339|Al_scaffold_0001_2593 612 2e-174 > Ahg921560 jgi|Araly1|921560|scaffold_102841.1 Length=1793 Score = 710 bits (384), Expect = 0.0 Identities = 700/844 (83%), Gaps = 55/844 (7%) Strand=Plus/Plus Query 206 GATGGCGTTATGTCTGGCCGATGGTGCCTAGACTCGAATTCAAAGAAGATGACAGCGAGA 265 ||||||||||||||||| ||||||||||||||||||| |||||||| || | |||||||| Sbjct 1 GATGGCGTTATGTCTGGACGATGGTGCCTAGACTCGAGTTCAAAGACGAAGGCAGCGAGA 60 Query 266 GCGTGGGGTGGTTTATTGAAAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATAGTT 325 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 61 GCGTTGGGTGGTTTATTGAGAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATGGTT 120 Query 326 TGGTTGTGGAACTCGGTCCACATTGTCCTGTTGACGTAGATGTCGGAAAGTGGGTTGAGA 385 || |||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 121 TGATTGTCGAAATCGGTCCACATTGTCCTTTTGACGTAGATGTTGGAAAGTGGGTTGAGA 180 Query 386 ACGTAGTTAATAGAGGTGT-GAAAGAGTTAGATTTCAATCTCCTCTGGACCGCAGAACCC 444 ||| ||||||||||| ||| ||| || ||||||||||| ||||||||||||||||| ||| Sbjct 181 ACGCAGTTAATAGAGATGTTGAA-GATTTAGATTTCAAGCTCCTCTGGACCGCAGAGCCC 239 Query 445 ACAGGATTTCCTAAGTGCCTTTACACATGCAACACGCTCGTTGATTTAAGTCTATCCAAC 504 ||| ||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| Sbjct 240 ACAAGATTTCCTAAGTGCCTTTACACATGTGACACGCTCGTTTATTTAACTCTATCCAAC 299 Query 505 AAGATTCTAGTGAACGTTTCTTCCCCTG-TTCGCCTACCATCTCTCTTA-ACTCTGAGTC 562 ||||||||||| | ||||| ||||| | ||| | |||||||||||||| | | |||||| Sbjct 300 CAGATTCTAGTGGATGTTTCCTCCCCGGCTTC-CTTACCATCTCTCTTATATT-TGAGTC 357 Query 563 TTCGCTTTGTGGTGTACAAAGACGAAGAATCTCTTGTTAGCCTTTTATCAAGCTCCCCTG 622 ||| || |||||||| |||||||| | ||||||||||| ||||||||||| || ||| Sbjct 358 TTCACTACGTGGTGTATAAAGACGATGGCTCTCTTGTTAGGCTTTTATCAAGTTCTCCTA 417 Query 623 TTCTCAACTGCCTGAAG-GTGGATCGACATAAGGATGACAACTTGACAAAA-TTTACCGT 680 ||||||| || |||| | ||| || ||||| || |||||||||||| ||| |||||||| Sbjct 418 TTCTCAAGTGGCTGA-GTGTGCATAGACATGAGAATGACAACTTGA-AAACCTTTACCGT 475 Query 681 GAAAGTATCTACCTT-GAAACAGTTACATTATAAT-ACTACTCGGCGGAAGGATGGGGTA 738 |||||| ||| | || ||| || || ||||| || | || | ||| ||| ||| |||| Sbjct 476 GAAAGTTTCTTCTTTAGAATCATTTT-ATTATGATGA-TAATTGGCTCAAGAATGAGGTA 533 Query 739 GAGGAT---GAG---GA--AG--AC-G-T-G--G---TAGAGGAAAATGAGGT--A-GAG 777 |||||| ||| || || | | | | | ||||||| |||||||| | ||| Sbjct 534 GAGGATAATGAGATTGATGAGGTAGAGGTTGATGCGGTAGAGGATAATGAGGTTGATGAG 593 Query 778 g-a-tg-atgatga--t-ga--t-gatga---tgatgatCTCAATAGATCCTTGGTAATA 825 | | || || |||| | || | ||||| ||||||||||||| |||| ||||||||| Sbjct 594 GTAGTGGATAATGAGGTAGAGGTTGATGAAGATGATGATCTCAATGGATCGTTGGTAATA 653 Query 826 GATTCCCCTGCATTAGAAATTTTAC-GCTTACGTAACGTTTTGGACTATTGCTTGATAGA 884 ||||||||||| ||| ||| ||| | | ||| | | |||| |||||||||||||||||| Sbjct 654 GATTCCCCTGCTTTAAAAAATTTGCAG-TTATATGAGGTTTGGGACTATTGCTTGATAGA 712 Query 885 GAATATTTCTTGCCTTCATATAG-CAAA-ACTCGGCTATGTTC-ATAACCCCGATCACAA 941 |||||| |||| |||| || || || | || | |||||| | ||||||||| |||| Sbjct 713 GAATATGTCTTTCCTTGATG-AGGCATTCA-TCAACAATGTTCCA-AACCCCGATGACAA 769 Query 942 GTTTCTGAGATCTCTTTCTTCTGTCATACATATGTACTTGTATTTGACCAAGCCAATGGT 1001 ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 770 GTTTCTGAGATCTCTTTCTTCTGTCATACATCTGTACTTGTATTTGACCAAATCAATGGT 829 Query 1002 TGCG 1005 ||| Sbjct 830 AGCG 833 Score = 551 bits (298), Expect = 5e-156 Identities = 623/772 (81%), Gaps = 54/772 (7%) Strand=Plus/Plus Query 376 TGGGTTGAGAACGTAGTTAATAGAGGTGTGAAAGAGTTAGATTTCAATCTCCTCTGGACC 435 ||||||||||||| ||||||| | ||||||||| | ||||||||||| |||||||||||| Sbjct 1008 TGGGTTGAGAACGCAGTTAATCGCGGTGTGAAATATTTAGATTTCAAGCTCCTCTGGACC 1067 Query 436 GCAGAACCCACAGGATTTCCTAAGTGCCTTTACACATGCAACACGCTCGTTGA-TTTAAG 494 ||||| |||||| | | ||||||| ||||||||||||| |||| |||||| | ||||| Sbjct 1068 GCAGATCCCACAAGCTATCCTAAGAGCCTTTACACATGTGACACACTCGTT-AGTTTAAC 1126 Query 495 TCTATCCAACAAGATTCTAGTGAACGTTTCTTCCCCTG-TTCGCCTACCATCTCTCTTA- 552 |||||||||| ||||||||||| | ||||| ||||| | ||| | |||||||||||||| Sbjct 1127 TCTATCCAACCAGATTCTAGTGGATGTTTCCTCCCCGGCTTC-CTTACCATCTCTCTTAT 1185 Query 553 ACTCTGAGTCTTCGCTTTGTGGTGTACAAAGACGAAGAATCTCTTGTTAGCCTTTTATCA 612 | | || |||||| || || ||||| ||||||||||| ||||||||||| ||||||||| Sbjct 1186 A-TTTGGGTCTTCACTACGTTGTGTATAAAGACGAAGACTCTCTTGTTAGGCTTTTATCA 1244 Query 613 AGCTCCCCTGTTCTCAACTGCCTGAAG-GTGGATCGACATAAGGATGACAACTTGACAAA 671 || || ||| |||| || || ||| | ||| || ||||| ||||||||||||||| ||| Sbjct 1245 AGTTCTCCTATTCTGAAGTGGCTG-TGTGTGCATAGACATGAGGATGACAACTTGA-AAA 1302 Query 672 -ATTTACCGTGAAAGTATCTACCTTGAAACAGTTACATTATAATACTACTCGGCGGAAGG 730 |||||||||||||| ||| |||| | | | | |||||| || || | | Sbjct 1303 CCTTTACCGTGAAAGTTTCTTCCTT-AGA-A--T-CATTAT-AT--TA-T---------G 1344 Query 731 ATGGGGTAGAGGATGAGGAAGACGTGGTAGAGGAAAATGAGGTAGAGgatgatgatgatg 790 || | | | | |||||| || | ||||| ||| ||||||||||| | | | ||||| Sbjct 1345 AT-GAG-A-ATAATGAGGTTGATGAGGTAGTGGATAATGAGGTAGA-G-T--T--TGATG 1395 Query 791 atgatgatgatgatCTCAATAGATCCTTGGTAATAGATTCCCCTGCATTAGAAATTTT-A 849 | | ||||||||||||||| |||| ||||| ||||||||||| |||||| ||||||| | Sbjct 1396 A--A-GATGATGATCTCAATGGATCGTTGGTTATAGATTCCCCAGCATTAAAAATTTTGA 1452 Query 850 CGCTTACGTAACGTTTTGGACTATTGCTTGATAGAGAATATTTCTTGCCTTCATATAGCA 909 |||| | | |||| |||||||||||||||||||||||| |||| |||| || | || Sbjct 1453 -ACTTATATGAGGTTTGGGACTATTGCTTGATAGAGAATATGTCTTTCCTTGATGTGGC- 1510 Query 910 AAAC-TCGGCTATGTTCATAACCCCGATCACAAGTTTCTGAGATCTCTTTCTTCTGTCAT 968 | | || || |||||| | |||||||| ||||||||||||||||||||||||||||||| Sbjct 1511 ATTCATCAGCAATGTTCCTTACCCCGATGACAAGTTTCTGAGATCTCTTTCTTCTGTCAT 1570 Query 969 ACATATGTACTTG-TATTTGACCAAGCCAATGGTTGCGTGGTGTAACACCATCAAGTTCT 1027 |||| ||||||| | ||| ||||| |||||||||| || |||| | ||||| |||||| Sbjct 1571 ACATCTGTACTTACTGTTT-ACCAAATCAATGGTTGCATGCTGTAGCGCCATCGAGTTCT 1629 Query 1028 CTCGGCTCTTGGAGTTTTATTTTGTTCCAAGCA-A-TTTGGTAGATTGGTTGGAA-CCAC 1084 | |||||| | |||||||| ||| ||||| | | | |||||||||||| ||| | |||| Sbjct 1630 CCCGGCTCATAGAGTTTTACTTTCTTCCA-G-ATAGTTTGGTAGATTGATTG-ATGCCAC 1686 Query 1085 TTATGTATTTGCTTCAAAATTCTCCTAAACT-ACAAATTCTTACGATTGACA 1135 |||||| |||||||||||||||||||||||| | ||| |||||||||||||| Sbjct 1687 TTATGTTTTTGCTTCAAAATTCTCCTAAACTTA-AAACTCTTACGATTGACA 1737 > Ahg921555 jgi|Araly1|921555|scaffold_102836.1 Length=1316 Score = 710 bits (384), Expect = 0.0 Identities = 700/844 (83%), Gaps = 55/844 (7%) Strand=Plus/Plus Query 206 GATGGCGTTATGTCTGGCCGATGGTGCCTAGACTCGAATTCAAAGAAGATGACAGCGAGA 265 ||||||||||||||||| ||||||||||||||||||| |||||||| || | |||||||| Sbjct 1 GATGGCGTTATGTCTGGACGATGGTGCCTAGACTCGAGTTCAAAGACGAAGGCAGCGAGA 60 Query 266 GCGTGGGGTGGTTTATTGAAAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATAGTT 325 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 61 GCGTTGGGTGGTTTATTGAGAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATGGTT 120 Query 326 TGGTTGTGGAACTCGGTCCACATTGTCCTGTTGACGTAGATGTCGGAAAGTGGGTTGAGA 385 || |||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 121 TGATTGTCGAAATCGGTCCACATTGTCCTTTTGACGTAGATGTTGGAAAGTGGGTTGAGA 180 Query 386 ACGTAGTTAATAGAGGTGT-GAAAGAGTTAGATTTCAATCTCCTCTGGACCGCAGAACCC 444 ||| ||||||||||| ||| ||| || ||||||||||| ||||||||||||||||| ||| Sbjct 181 ACGCAGTTAATAGAGATGTTGAA-GATTTAGATTTCAAGCTCCTCTGGACCGCAGAGCCC 239 Query 445 ACAGGATTTCCTAAGTGCCTTTACACATGCAACACGCTCGTTGATTTAAGTCTATCCAAC 504 ||| ||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| Sbjct 240 ACAAGATTTCCTAAGTGCCTTTACACATGTGACACGCTCGTTTATTTAACTCTATCCAAC 299 Query 505 AAGATTCTAGTGAACGTTTCTTCCCCTG-TTCGCCTACCATCTCTCTTA-ACTCTGAGTC 562 ||||||||||| | ||||| ||||| | ||| | |||||||||||||| | | |||||| Sbjct 300 CAGATTCTAGTGGATGTTTCCTCCCCGGCTTC-CTTACCATCTCTCTTATATT-TGAGTC 357 Query 563 TTCGCTTTGTGGTGTACAAAGACGAAGAATCTCTTGTTAGCCTTTTATCAAGCTCCCCTG 622 ||| || |||||||| |||||||| | ||||||||||| ||||||||||| || ||| Sbjct 358 TTCACTACGTGGTGTATAAAGACGATGGCTCTCTTGTTAGGCTTTTATCAAGTTCTCCTA 417 Query 623 TTCTCAACTGCCTGAAG-GTGGATCGACATAAGGATGACAACTTGACAAAA-TTTACCGT 680 ||||||| || |||| | ||| || ||||| || |||||||||||| ||| |||||||| Sbjct 418 TTCTCAAGTGGCTGA-GTGTGCATAGACATGAGAATGACAACTTGA-AAACCTTTACCGT 475 Query 681 GAAAGTATCTACCTT-GAAACAGTTACATTATAAT-ACTACTCGGCGGAAGGATGGGGTA 738 |||||| ||| | || ||| || || ||||| || | || | ||| ||| ||| |||| Sbjct 476 GAAAGTTTCTTCTTTAGAATCATTTT-ATTATGATGA-TAATTGGCTCAAGAATGAGGTA 533 Query 739 GAGGAT---GAG---GA--AG--AC-G-T-G--G---TAGAGGAAAATGAGGT--A-GAG 777 |||||| ||| || || | | | | | ||||||| |||||||| | ||| Sbjct 534 GAGGATAATGAGATTGATGAGGTAGAGGTTGATGCGGTAGAGGATAATGAGGTTGATGAG 593 Query 778 g-a-tg-atgatga--t-ga--t-gatga---tgatgatCTCAATAGATCCTTGGTAATA 825 | | || || |||| | || | ||||| ||||||||||||| |||| ||||||||| Sbjct 594 GTAGTGGATAATGAGGTAGAGGTTGATGAAGATGATGATCTCAATGGATCGTTGGTAATA 653 Query 826 GATTCCCCTGCATTAGAAATTTTAC-GCTTACGTAACGTTTTGGACTATTGCTTGATAGA 884 ||||||||||| ||| ||| ||| | | ||| | | |||| |||||||||||||||||| Sbjct 654 GATTCCCCTGCTTTAAAAAATTTGCAG-TTATATGAGGTTTGGGACTATTGCTTGATAGA 712 Query 885 GAATATTTCTTGCCTTCATATAG-CAAA-ACTCGGCTATGTTC-ATAACCCCGATCACAA 941 |||||| |||| |||| || || || | || | |||||| | ||||||||| |||| Sbjct 713 GAATATGTCTTTCCTTGATG-AGGCATTCA-TCAACAATGTTCCA-AACCCCGATGACAA 769 Query 942 GTTTCTGAGATCTCTTTCTTCTGTCATACATATGTACTTGTATTTGACCAAGCCAATGGT 1001 ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 770 GTTTCTGAGATCTCTTTCTTCTGTCATACATCTGTACTTGTATTTGACCAAATCAATGGT 829 Query 1002 TGCG 1005 ||| Sbjct 830 AGCG 833 > Ahg912339 jgi|Araly1|912339|Al_scaffold_0001_2593 Length=549 Score = 612 bits (331), Expect = 2e-174 Identities = 461/521 (88%), Gaps = 19/521 (4%) Strand=Plus/Plus Query 892 TCTTGCCTTCATATAGCAAAAC-TCGGCTATGTTCATAACCCCGATCACAAGTTTCTGAG 950 ||||||||| || | || | | ||||| |||||||||||| |||| ||||||| ||||| Sbjct 4 TCTTGCCTTAATGTGGC-ACGCATCGGCAATGTTCATAACCTCGATGACAAGTTGCTGAG 62 Query 951 ATCTCTTTCTTCTGTCATACATATGTACTTGTATTTGACCAAGCCAATGGTTGCGT-GGT 1009 |||||||||||||||||||||| ||||||||| |||||| || |||||||||| | | | Sbjct 63 ATCTCTTTCTTCTGTCATACATCTGTACTTGTGTTTGACTAAATCAATGGTTGC-TAGCT 121 Query 1010 GTAACACCATCAAGTTCTCTCGGCTCT-TGGAGTTTT-ATTTTGTTCCAAGCAATT-TGG 1066 ||||| ||||||||||||||||||| | | ||||||| |||| ||||||| || | | Sbjct 122 GTAACGCCATCAAGTTCTCTCGGCT-TATAGAGTTTTGCTTTT-TTCCAAGTTGTTAT-G 178 Query 1067 TAGATTGGTTGGAACCACTTATG-TATTTGCTTCAAAATTCTCCTAAACTACAAATTCTT 1125 ||||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||| |||| Sbjct 179 TAGATTGGTTGGAACCACTTATGATATTT-CTTCAAATTTCTCCTAAACTAAAAACTCTT 237 Query 1126 ACGATTGACACTGATTCTAC--GTGTCTCCCACCTTCATGGAACCAGCCGAGTTCTTCTA 1183 |||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||||| Sbjct 238 ACGATTGACACTGA-T-TACGGGTGTCTCCCACCTTCGTGGAACCAGCCGAGTTCTTCTA 295 Query 1184 CTATTCCCGAATGCTTGTTGTCTCATTTACAGATCTTTAGGTGGGGAGGCTATGGAGGAA 1243 | |||||||||||||| ||||||||| |||||||| ||||| |||| ||| |||||| Sbjct 296 C---TCCCGAATGCTTGTCATCTCATTTAGAGATCTTTGGGTGGAGAGGGTATCGAGGAA 352 Query 1244 GAGAAGATGAGAAATAACTAATGACATACATTCTCGCTAACTCAAAGTGTTTAAAGAGAG 1303 ||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| || Sbjct 353 GAGAAGATGCGAAACAACTATTGACATACATTCTCGCTAACTCAAAGTGTTTAAAGACAG 412 Query 1304 TGGCGATCTTTCTCTTAGCAACCTGCAATCTTGAAGAGACACAAATGGAGTTAGAATCTA 1363 ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 413 TGGGGATCTTTCTCTTAGCAACCTGCAATCTTGAAGAGACACAAAAGGAGTTACAATCTA 472 Query 1364 TGCCTAGGAACTCAACATCATCTCAACTTCTAACCTCCTCC 1404 |||||||||| ||||||||||| |||||||||||||||||| Sbjct 473 TGCCTAGGAATTCAACATCATCCCAACTTCTAACCTCCTCC 513 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53402523490 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5