BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26900.1
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921544 jgi|Araly1|921544|scaffold_102825.1 2595 0.0
> Ahg921544 jgi|Araly1|921544|scaffold_102825.1
Length=1748
Score = 2595 bits (1405), Expect = 0.0
Identities = 1615/1716 (94%), Gaps = 16/1716 (1%)
Strand=Plus/Plus
Query 12 GATTACGTCACGGCTCAGGCGCAATTTCGTGTTCCGTCGTAGGAATCTTGAAT-CGTTGT 70
||| || ||| | ||||| |||||||| |||||||| |||| |||||||| || ||||||
Sbjct 20 GATGACATCAAGCCTCAGTCGCAATTTTGTGTTCCGACGTAAGAATCTTG-ATGCGTTGT 78
Query 71 TGTCTCCACAATGTCAGAAACTTATCA-ACGATCTAAGGTCTTGCAGAGACACCGTCGAA 129
| ||||||||||| ||||||||| | | | ||| |||| ||||||||||||| | |||||
Sbjct 79 TATCTCCACAATGCCAGAAACTTGT-AGAAGATTTAAGATCTTGCAGAGACATCTTCGAA 137
Query 130 GTTTCTCGAATTCATGGTTACATGGTGAAAAC-GGGACTCGACAAGGACGATTTCGCAGT 188
||||||||||||||||| |||||||||||||| |||| | || ||||| |||||| ||||
Sbjct 138 GTTTCTCGAATTCATGGCTACATGGTGAAAACGGGGA-TTGATAAGGATGATTTCTCAGT 196
Query 189 GAGCAAGCTTCTTGCTTTTTCCTCTGTACTTGACATTCGATACGCTTCGTCGATCTTCGA 248
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 197 GAGCAAGCTTCTTGCTTTTTCCTCTGTACTTGACATTCGATACGCTTCTTCGATCTTCGA 256
Query 249 GCATGTCTCCAACACTAATCTCTTTATGTTCAACACTATGATCAGAGGTTACTCGATTAG 308
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 257 GCATGTCTCCAACACTAATCTCTATATGTTCAACACTATGATCAGAGGTTACTCGATTAG 316
Query 309 CGATGAGCCGGAGCGAGCATTTTC-TGTTTTCAACCAATTGAGAGCTAAAGGTTTGACCT 367
||||||||||||||||||| |||| |||||||||||||||||||||||||||| | ||||
Sbjct 317 CGATGAGCCGGAGCGAGCA-TTTCGTGTTTTCAACCAATTGAGAGCTAAAGGTATCACCT 375
Query 368 TGGACCGATTCTCGTTTATCACGACTCTTAAATCATGTTCTCGTGAATTGTGT-GTTTCA 426
||||||||||||| |||||||||||||| ||||||||||||||||| |||||| | ||||
Sbjct 376 TGGACCGATTCTCTTTTATCACGACTCTGAAATCATGTTCTCGTGATTTGTGTAG-TTCA 434
Query 427 ATTGGTGAGGGATTGCATGGGATTGCTTTGAGATCTGGGTTTATGGTTTTTACTGATTTG 486
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 435 ATTGGTGAGGGATTGCATGGGATTGCTTTGAGATCTGGGTTCATGGTTTTTACTGATTTG 494
Query 487 AGGAATGCTCTTATACATTTTTACTGTGTTTGTGGAAAGATTAGTGATGCTCGGAAAGTG 546
|||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 495 AGGAATGCTCTTCTACAATTTTACTGTGTTTGTGGAAGGATTAATGATGCTCGGAAAGTG 554
Query 547 TTCGACGAAATGCCGCAGAGTGTTGATGCTGTTACGTTTAGTACTTTGATGAATGGGTAT 606
||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 555 TTCGACGAAATGCCGCATAGTGTTGATTCTGTTTCGTTTAGTACTTTGATGAATGGGTAT 614
Query 607 CTTCAGGTTTCTAAGAAAGCGTTGGCTTTGGATTTGTTTAGGATTATGAGAAAAAGTGAG 666
||||||||| ||||| ||||||||||| |||||||||||||||||||| |||| |||||
Sbjct 615 CTTCAGGTTACTAAGCAAGCGTTGGCTCTGGATTTGTTTAGGATTATGCGAAATAGTGAA 674
Query 667 GTGGTCGTTAATGTCAGTACGTTGCTTAGCTTTCTTTCGGCTATTAGTGATCTAGGAGAT 726
||| |||||||||||||||||||||| ||||||||||||||| | | ||||||||| |
Sbjct 675 GTGCCCGTTAATGTCAGTACGTTGCTTGGCTTTCTTTCGGCTACTGGAGATCTAGGAAAC 734
Query 727 TTGTCTGGAGCAGAATCTGCTCAT-GTGTTATGCATCAAGATTGGCCTTGATTTAGACTT 785
|||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||
Sbjct 735 TTGTCTGGAGCAGAATCTGCTCATGGT-TTATGCATCAAGATTGGTTTTAATTTAGACTT 793
Query 786 GCATTTAATCACAGCTTTGATAGGGATGTACGGCAAAACTGGGGGTATCAGTTCAGCACG 845
||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||||
Sbjct 794 GCATTTAATCACAGCTTTGATTGGGATGTACGGCAAAATTGGGGATATCGGTTCAGCACG 853
Query 846 CAGGATCTTTGATTGCGCCATTCGAAAGGATGTTGTTACATGGAACTGTATGATAGACCA 905
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 854 CAGGATCTTTGATTGCGCCATTCGAAAGGATGTTGTTACATGGAACTGTATGATTGACCA 913
Query 906 ATATGCCAAAACGGGTCTCCTTGAAGAGTGTGTATGGCTACTGAGGCAGATGAAGTATGA 965
||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 914 ATATGCCAAAATGGGTCTCCTTGAAGAGAGTTTATGGCTACTGAGGCAGATGAAGTATGA 973
Query 966 AAAAATGAAACCGAATTCATCTACATTTGTTGGGCTGTTGTCTTCCTGTGCGTACAGTGA 1025
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 974 AAGAATGAAACCGAATTCATCTACATTTGTTGGGCTGTTGTCTTCCTGTGCGAACAGTGA 1033
Query 1026 AGCAGCATTCGTAGGACGTACTGTTGCTGATCTATTGGAAGAGGAAAGAATAGCTTTGGA 1085
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1034 AGCAGCATTCGTAGGACGTAGTGTTGCTGATCTAGTGGAAGAGGAAAGAATAGCTTTGGA 1093
Query 1086 TGCAATACTTGGAACTGCACTCGTTGATATGTATGCAAAAGTAGGATTGCTTGAAAAAGC 1145
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 1094 TGCAATACTTGGAACTGCACTCGTTGATATGTATGCAAAACTAGGAATGCTTGACAAAGC 1153
Query 1146 TGTTGAGAT-TTTCAATAGAATGAAGGATAAGGATGTAAAGTCCTGGACCGCGATGATCT 1204
|||||| || ||| ||||||||||||||||||||||| | |||||||||||| |||||||
Sbjct 1154 TGTTGAAATATTT-AATAGAATGAAGGATAAGGATGTTATGTCCTGGACCGCAATGATCT 1212
Query 1205 CGGGTTATGGAGCTCATGGACTAGCAAGAGAAGCAGTAACACTATTCAATAAGATGGAGG 1264
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1213 CGGGTTATGGAGCTCATGGACTAGCAAGAGAAGCAGTAACACTGTTCAATAAGATGGAGG 1272
Query 1265 AAGAGAACTGCAAAGTGAGACCCAATGAGATTACCTTCTTGGTTGTGCTGAATGCTTGTA 1324
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 AAGAGAACTGCAAGGTGAGACCCAATGAGATTACCTTCTTGGTTGTGCTGAATGCTTGTA 1332
Query 1325 GCCATGGAGGGTTGGTAATGGAAGGAATCAGATGCTTTAAGAGGATGGTTGAGGCTTACA 1384
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GTCATGGAGGGTTGGTAATGGAAGGAATCAGATGCTTTAAGAGGATGGTTGAGGCTTACA 1392
Query 1385 GCTTCACGCCCAAAGTTGAACATTATGGTTGTGTGGTTGATCTTTTAGGTCGAGCGGGGC 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 GCTTCACGCCCAAAGTTGAACATTATGGTTGTGTGGTTGATCTTTTAGGTCGAGCGGGGC 1452
Query 1445 AGTTAGAGGAAGCGTATGAGTTAATAAGGAACTTACCGATCACAAGTGATTCAACGGCTT 1504
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1453 AGTTAGAGGAAGCGTATGAGTTAATAAGGAACTTACCTATCACAAGTGATTCATCGGCTT 1512
Query 1505 GGCGTGCTCTGCTAGCTGCTTGTAGAGTATACGGGAATGCAGATTTGGGGGAAAGTGTGA 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 GGCGTGCTCTGCTAGCTGCTTGTAGAGTATACGGGAATGCAGATTTGGGGGAAAGTGTGA 1572
Query 1565 TGATGAGATTGGCTGAAATGGGTGAGACT-CATCCGGCAGATGCAATTCTTCTAGCTGGG 1623
||||||||||||||||||||| ||||| | ||||| || |||||||||||||| ||||||
Sbjct 1573 TGATGAGATTGGCTGAAATGGATGAGA-TACATCCAGCTGATGCAATTCTTCTTGCTGGG 1631
Query 1624 ACACACGCTGTTGCAGGGAACCCAGAAAAATCATTAGATAATGAGTTGAATAAAGGGAGA 1683
|||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| ||||
Sbjct 1632 ACACACGCTGTTGCAGGGAATCCACAAAAATCATTAGATGATGAGTTGAATAAAGCGAGA 1691
Query 1684 AAAGAAGCTGGATACAGCGCCATTGAAATAGAATAG 1719
||||||||||||||||||||||||||||||||||||
Sbjct 1692 AAAGAAGCTGGATACAGCGCCATTGAAATAGAATAG 1727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64486784785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5