BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26910.1
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921543 jgi|Araly1|921543|scaffold_102824.1 1170 0.0
Ahg476107 jgi|Araly1|476107|fgenesh2_kg.2__1237__AT1G66580.1 839 0.0
Ahg920320 jgi|Araly1|920320|scaffold_101601.1 789 0.0
> Ahg921543 jgi|Araly1|921543|scaffold_102824.1
Length=707
Score = 1170 bits (633), Expect = 0.0
Identities = 674/694 (97%), Gaps = 2/694 (0%)
Strand=Plus/Plus
Query 53 CAACGCGATGGGACGAAGACCTGCGAGATGTTACCGTCAAATTAAGGGAAAGCCATACCC 112
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 15 CAACGCGATGGGGCGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACCC 74
Query 113 TAAATCAAGATACTGTCGTGGTGTTCCCGATCCTAAGATCAGGATTTACGATGTTGGTAT 172
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 75 AAAATCAAGATACTGTCGTGGTGTTCCCGATCCAAAGATCAGGATTTACGATGTTGGTAT 134
Query 173 GAAGAGGAAAGGAGTTGATGAGTTCCCTTACTGTGTTCATTTGGTTTCATGGGAGAAAGA 232
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 135 GAAGAGGAAAGGAGTTGATGAGTTCCCTTACTGTGTTCATTTAGTTTCATGGGAGAAAGA 194
Query 233 GAATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTACATGGTGAA 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 GAATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTACATGGTGAA 254
Query 293 GTCTGCCGGGAAAGATGCGTTT-CATCTCCGTATTAGAGTTCATCCTTTCCATGTTCTTA 351
||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 255 ATCTGCGGGGAAAGATGC-TTTCCATCTCCGTATTAGAGTTCATCCTTTCCATGTTCTTA 313
Query 352 GGATCAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGTATGAGAGGTG 411
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 GGATTAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGTATGAGAGGTG 373
Query 412 CTTTTGGCAAAGCTCTTGGTACTTGTGCTAGAGTTGCTATTGGACAGGTTCTTTTGTCTG 471
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 374 CTTTTGGTAAAGCTCTTGGTACTTGTGCTAGAGTTGCTATCGGACAGGTTCTTTTGTCTG 433
Query 472 TGAGGTGCAAAGATGCTCATGGTCATCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTTA 531
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 434 TGAGATGCAAAGATGCTCATGGACATCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTTA 493
Query 532 AGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGGTTCACCAAGTTTAACC 591
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 494 AGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACCAAGTTTAACC 553
Query 592 GTGCTGATTACACAAAGCTAAGGCAAGAGAAGAGGATTGTCCCTGATGGTGTAAATGCCA 651
|||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 554 GTGCTGATTACACAAAGCTAAGGCAAGAGAAGCGGATTGTCCCTGATGGTGTCAACGCCA 613
Query 652 AGTTCCTATCTTGCCATGGTCCGTTGGCTAACCGTCAGCCCGGAAGTGCGTTCTTGTCAG 711
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 614 AGTTCCTATCTTGCCATGGTCTGTTGGCTAACCGTCAGCCCGGAAGTGCGTTCTTGTCAG 673
Query 712 CTGGTGCACAGTGATGCAGATGACTTGTCGATGT 745
|||||||||||||||||||||||||||| |||||
Sbjct 674 CTGGTGCACAGTGATGCAGATGACTTGTGGATGT 707
> Ahg476107 jgi|Araly1|476107|fgenesh2_kg.2__1237__AT1G66580.1
Length=825
Score = 839 bits (454), Expect = 0.0
Identities = 601/672 (89%), Gaps = 10/672 (1%)
Strand=Plus/Plus
Query 47 AAC-AAT-CAACGCGATGGGACGAAGACCTGCGAGATGTTACCGTCAAATTAAGGGAAAG 104
||| ||| |||| |||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 31 AACGAATCCAACACGATGGGACGAAGACCAGCGAGGTGTTACCGTCAGATTAAGGGAAAG 90
Query 105 CCATACCCTAAATCAAGATACTGTCGTGGTGTTCCCGATCCTAAGATCAGGATTTACGAT 164
|||||||| |||||| ||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct 91 CCATACCCGAAATCACGATACTGTCGTGGAGTTCCAGATCCAAAAATCAGGATTTACGAT 150
Query 165 GTTGGTATGAAGAGGAAAGGAGTTGATGAG-TTCCCTTACTGTGTTCATTTGGTTTCATG 223
|| ||||||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 151 GTCGGTATGAAGAGGAAAGGAGTTGATGAGTTTCCATT-CTGTGTTCATTTGGTTTCATG 209
Query 224 GGAGAAAGAGAATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTA 283
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 210 GGAGAAAGAGAATGTTTCAAGTGAAGCTCTTGAAGCTGCACGTATTGCTTGTAACAAGTA 269
Query 284 CATGGTGAAGTCTGCCGGGAAAGATGCGTTTCATCTCCGTATTAGAGTTCATCCTTTCCA 343
|||||| || ||||| || ||||||||||| |||||||| ||||| |||||||| |||||
Sbjct 270 CATGGTTAAATCTGCTGGTAAAGATGCGTTCCATCTCCGGATTAGGGTTCATCCGTTCCA 329
Query 344 TGTTCTTAG-GA-TCAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGT 401
|||| || | || |||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 330 TGTT-TT-GCGAATCAACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGA 387
Query 402 ATGAGAGGTGCTTTTGGCAAAGCTCTTGGTACTTGTGCTAGAGTTGCTATTGGACAGGTT 461
||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 388 ATGAGAGGTGCTTTTGGTAAAGCTCTTGGTACTTGTGCTAGAGTTGCGATCGGACAGGTT 447
Query 462 CTTTTGTCTGTGAGGTGCAAAGATGCTCATGGTCATCATGCTCAGGAGGCTCTTCGTCGT 521
||||||||||| ||||| || ||| |||||| |||||||||||| ||||||||| |
Sbjct 448 CTTTTGTCTGTTAGGTGTAAGGATAATCATGGAGTTCATGCTCAGGAAGCTCTTCGTAGA 507
Query 522 GCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGGTTCACC 581
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 508 GCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACC 567
Query 582 AAGTTTAACCGTGCTGATTACACAAAGCTAAG-GCAAGAGAAGAGGATTGTCCCTGATGG 640
|| || ||||||||||| ||||| ||| |||| || | |||||||||||| ||||||||
Sbjct 568 AAATTCAACCGTGCTGAGTACACGAAGTTAAGAGCGAT-GAAGAGGATTGTTCCTGATGG 626
Query 641 TGTAAATGCCAAGTTCCTATCTTGCCATGGTCCGTTGGCTAACCGTCAGCCCGGAAGTGC 700
||| ||||| ||||| ||||| |||||| || |||||||||||||| || ||||||||
Sbjct 627 TGTCAATGCTAAGTTTCTATCAAACCATGGGCCATTGGCTAACCGTCAACCTGGAAGTGC 686
Query 701 GTTCTTGTCAGC 712
||| | |||||
Sbjct 687 CTTCATATCAGC 698
> Ahg920320 jgi|Araly1|920320|scaffold_101601.1
Length=736
Score = 789 bits (427), Expect = 0.0
Identities = 585/662 (88%), Gaps = 8/662 (1%)
Strand=Plus/Plus
Query 55 ACGCGATGGGACGAAGACCTGCGAGATGTTACCGTCAAATTAAGGGAAAGCCATACCCTA 114
|||| |||||| ||||||||||||| ||||||||||| || ||||| ||||||||||| |
Sbjct 44 ACGCCATGGGAAGAAGACCTGCGAGGTGTTACCGTCAGATCAAGGGTAAGCCATACCCAA 103
Query 115 AATCAAGATACTGTCGTGGTGTTCCCGATCCTAAGATCAGGATTTACGATGTTGGTATGA 174
|||| |||||||||||||||| || ||||| || |||||||| ||||||||||| ||||
Sbjct 104 AATCTCGATACTGTCGTGGTGTGCCAGATCCAAAAATCAGGATCTACGATGTTGGAATGA 163
Query 175 AGAGGAAAGGAGTTGATGAGTTCCC-TTACTGTGTTCATTTGGTTTCATGGGAGAAAGAG 233
|||||||||| |||||||| ||||| || |||||| |||||||| ||||||||||| |||
Sbjct 164 AGAGGAAAGGTGTTGATGAATTCCCATT-CTGTGTCCATTTGGTATCATGGGAGAAGGAG 222
Query 234 AATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTACATGGTGAAG 293
||||| || |||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 223 AATGTGTCCAGTGAAGCACTTGAAGCTGCACGTATTGCTTGCAACAAGTACATGGTGAAA 282
Query 294 TCTGCCGGGAAAGATGCGTTTCATCTCCGTATTAGAGTTCATCCTTTCCATGTTCTTAGG 353
||||| ||||||||||| |||||| | | ||||| |||||||||||||||||||| |||
Sbjct 283 TCTGCAGGGAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCTCAGG 342
Query 354 ATCAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGTATGAGAGGTGCT 413
|| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 343 ATTAACAAGATGCTTTCCTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGTGCT 402
Query 414 TTTGGCAAAGCTCTT-GGTACTTGTGCTAGAGTTGCTATTGGACAGGTTCTTTTGTCTGT 472
||||| |||||| || |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 403 TTTGGTAAAGCT-TTGGGTACTTGTGCTCGTGTTGCTATTGGACAGGTTCTTTTGTCTGT 461
Query 473 GAGGTGCAAAGATGCTCATGGTCATCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTTAA 532
| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 462 TCGTTGCAAGGATGCTCATGGTCACCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTCAA 521
Query 533 GTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGGTTCACCAAGTTTAACCG 592
||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||| |
Sbjct 522 GTTCCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGTTTCACGAAGTTTAACAG 581
Query 593 TGCTGA-TTACACAAAGCTAAGGCAAGAGAAGAG-GATTGTCCCTGATGGTGTAAATGCC 650
||||| || ||| ||| | |||||||||||| | | |||| ||||||||||| || ||
Sbjct 582 AGCTGACTT-CACCAAGTTGAGGCAAGAGAAGCGTG-TTGTTCCTGATGGTGTCAACGCT 639
Query 651 AAGTTCCTATCTTGCCATGGTCCGTTGGCTAACCGTCAGCCCGGAAGTGCGTTCTTGTCA 710
|||||||| || |||||||| || ||||||||||||||||| |||||||| || ||| ||
Sbjct 640 AAGTTCCTCTCATGCCATGGACCTTTGGCTAACCGTCAGCCGGGAAGTGCCTTTTTGCCA 699
Query 711 GC 712
||
Sbjct 700 GC 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32480725284
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5