BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26911.1
Length=281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912336 jgi|Araly1|912336|Al_scaffold_0001_2590 331 1e-90
> Ahg912336 jgi|Araly1|912336|Al_scaffold_0001_2590
Length=282
Score = 331 bits (179), Expect = 1e-90
Identities = 253/284 (89%), Gaps = 23/284 (8%)
Strand=Plus/Plus
Query 1 GGTGGAGTGTTTGGAGGGAACAGAGGATTGAGACCAATACCACCAGAAAAGGGTATTTTA 60
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 10 GGTGGAGCGTTTGGAGGAAACAGAGGATTGAGACCAATACCACCAGAAAAGGGTATTTTT 69
Query 61 CCTTTGGATCATTTGCATCAATGTG--AC-GAGAAGAAAGGTTATCTTAACTGTCTCAAG 117
||||||||||||||||||||||| | || ||||||||||||||||| |||||||||||
Sbjct 70 CCTTTGGATCATTTGCATCAATGCGACACGGAGAAGAAAGGTTATCTCGACTGTCTCAAG 129
Query 118 TCTACTGGTCATAAGTCTGAGCAATGTAGGCATCTTTCAAAGACGTATCTCGAGTGTCGG 177
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 TCTTCTGGTCATAAGTCTGAGCAATGTAGGCATCTTTCAAAGACGTATCTCGAGTGTCGG 189
Query 178 ATGGCTAAGTCAGTCCTTTCATGCAGGAATTTGATGGCAAAGCAAGATATGTCTGAGCTG 237
||||| || || | | |||||||||||||||||||||||||||||||
Sbjct 190 ATGGC-AA---AG-------A---A----TTTGATGGCAAAGCAAGATATGTCTGAGCTG 231
Query 238 GGATTCAGTGGTGAATTACTGAACTGGATTCTACTGTGGAGAAA 281
||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 232 GGATTCAGTGGTG--TTACTGAACTGGATTCTATTGTGGAGAAA 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9805986373
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5