BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26920.1
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472707 jgi|Araly1|472707|fgenesh2_kg.1__2661__AT1G26920.1 952 0.0
> Ahg472707 jgi|Araly1|472707|fgenesh2_kg.1__2661__AT1G26920.1
Length=787
Score = 952 bits (515), Expect = 0.0
Identities = 716/808 (89%), Gaps = 34/808 (4%)
Strand=Plus/Plus
Query 1 ATCTCGCTTATCACCCTCACA-ATTTCTCTCTCTAACGTTTCTAAAA-CATCctctctct 58
||||| ||||||||||||||| |||| |||||||||||| |||||| | ||||||||||
Sbjct 1 ATCTCTCTTATCACCCTCACATTTTTCCCTCTCTAACGTTACTAAAAGC-TCCTCTCTCT 59
Query 59 ctctctc-t-cATAACATGGCTGAAACATCTGATGTATCGCCATTGAAGCGTTACAGAGA 116
|| |||| | ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 60 CTTTCTCTTGAATAACATGGCTGAAATATCTGATGTATCGCCATTGAAGCGTTACAGAGA 119
Query 117 ACAAGAAACCCTAGTC-GAGGAAGAAACGAA-CAAACGACAAAAGCCAACTTCGTCATCA 174
|||||||||||||| | || |||||||| || ||||||||||||||| |||||||||||
Sbjct 120 ACAAGAAACCCTAG-CAGAAGAAGAAAC-AACCAAACGACAAAAGCCCGCTTCGTCATCA 177
Query 175 TCCTCTGCCTCTTACAACCAAATTCTCTGTCTTCTCAACGATTCAGACGAACAAAACCAA 234
|| ||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 178 TCTTCTTCCTCTTACAACCAAATTCTATGTCTCCTCAACGATTCAGACGAACAAAACCAA 237
Query 235 CACAACAATGACCTAACTTCCTTCATAAACGCTCTTCAGCAAGAAATATCATCGGATGAC 294
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 238 CACAACAATGACCTAACTTCCTTTATAAACGCTCTTCAGCAAGAAATCTCATCAGATGAC 297
Query 295 CAATACGCCGTCGTTTCAGAAACC-TCCAACGTCGAAGACTCGT--T-TTCTTCATGTGT 350
||| ||||||||||||| |||||| | ||||||||||||||||| | || || || ||
Sbjct 298 CAAAACGCCGTCGTTTCCGAAACCAT-CAACGTCGAAGACTCGTCGTCATCGTCGTGCGT 356
Query 351 TTCCTC-AAAGGAAGAAGAAGTGGAAGATGACAGCAAGGAGAAAGTGATGCAGCATCTTT 409
|||||| ||| |||||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct 357 TTCCTCGAAA-GAAGAAGATGTCGAAGATGACAACAAGGAGAAAGTGATGCAGCATCTTT 415
Query 410 TGGAAGCTTCCGATGACGAACTTGGGATCCCTAACACAGATTTTGGCGAGAGTAATTATG 469
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 416 TGGAAGCTTCCGATGACGAACTTGGGATCCCTCACACAGATTTTGGCGAGAGTAATTATG 475
Query 470 AAAAGGCTAATGACG-GTTACGTTTATGGAGATAGTTTGTTAGATGGGTTTGGTGATGCG 528
||||| ||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 476 AAAAGACTAATGA-GAGTTACGTTTATGGAGATAGCTTGTTAGATGGGTTTGGTGATGCG 534
Query 529 TTTTGGGAGCTTGAAGACGAAGCTGCTAATTATTACACGTTGCTGCAGTCTGAGCTGTTC 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 535 TTTTGGGAGCTTGAAGACGAAGCTGCTAATTATTACACGTTGCTGCAGTCTGAGCTATTC 594
Query 589 ATGTAGAAATTATCCTAATGGTTGGGAAAT-AACTTCTTTTAAAACGTAAATCTGGAAGA 647
||||||||| ||||||||| ||| || || |||||||||||||||||||
Sbjct 595 ATGTAGAAACTATCCTAATTAATGGTCAACCAAAAAAAAA-AAAACGTAAATCTGGAAGA 653
Query 648 ATAGGCCAATAACAAAACAAAACATAAAAGATTGTGTCttttttttttagtatggaagtt 707
|||||||||||| |||| ||| | | |||||||||||| | ||||||| ||
Sbjct 654 ATAGGCCAATAA-AAAA-AAAG--TG---G---GTGTCTTTTTTTA--A-TATGGAAATT 700
Query 708 catttcatttttttaaggcacatttcttttgtttttGTGGAGCTTACAAAAGATCATTTT 767
|||||||||||| ||| |||||||||||||||||| ||||| | ||||||||||||
Sbjct 701 AATTTCATTTTTTCAAGACACATTTCTTTTGTTTTTCCGGAGCG-AGGAAAGATCATTTT 759
Query 768 AATTGATTGAGTAATTTGTAGCAAGGCA 795
|||||||||| |||||||||| ||||||
Sbjct 760 AATTGATTGATTAATTTGTAGTAAGGCA 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32861954454
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5