BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26930.1
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472706 jgi|Araly1|472706|fgenesh2_kg.1__2660__AT1G26930.1 2255 0.0
Ahg471603 jgi|Araly1|471603|fgenesh2_kg.1__1557__AT1G14330.1 302 7e-81
> Ahg472706 jgi|Araly1|472706|fgenesh2_kg.1__2660__AT1G26930.1
Length=1412
Score = 2255 bits (1221), Expect = 0.0
Identities = 1353/1416 (96%), Gaps = 11/1416 (1%)
Strand=Plus/Plus
Query 1 AGGAGCTTAAACCTTAAGATTTC-AGCAAATGGGATCGATTTTAAGCTTCGTCTGGGTTA 59
||||||||||||||||||||||| || |||||| |||||||||||||||| |||||||||
Sbjct 1 AGGAGCTTAAACCTTAAGATTTCAAG-AAATGGAATCGATTTTAAGCTTCTTCTGGGTTA 59
Query 60 AAAGCTTGGATCCTATCTGAAGACAGAACAAAGGTTCTTGCTTTTGATTCATTGCCCATT 119
||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 60 AAAGCTTGGATCCAATCTGAAGACAGAACAAAGTTTCTTGCTTTTGATTCTTTGCCCATT 119
Query 120 TTGAGAAGATGTTCG-A--AGGTCGTCCTCGTGATTCTTGTCTAGTTTCAACACTTTTCA 176
||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 TTGAGAAGATGTTCGAAGGAGGTCGACCTCGTGATTCTTGTCTAGTTTCAACACTTTTCA 179
Query 177 CCATGCCAAGCCATAAAGAAACGAAATGGAGCTTTTTGGTTTCTGGGAAACGATCTTTTC 236
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 CCATGCCAAGCCATCAAGAAACGAAATGGAGCTTTTTGGTTTCTGGTAAACGATCTTTTC 239
Query 237 TCAACAACGATGAGTCTGATCTTCACTTCAAGAAGATGTACAAGCTTACTACTGATTCAA 296
||||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||
Sbjct 240 TCAACAACGATGAGTCTGATCTTCACTTCAAGAAGATGTACAAGC-T-C-GCTGGTTCAA 296
Query 297 GT-GA--AGGAGAAGACAATGGATCTTCTTCAGATTCAGGAACACTTATCCCAGGGATGA 353
|| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTGGAGGAGGAGGAGACAATGGATCTTCTTCAGATTCAGGAACACTTATCCCAGGGATGA 356
Query 354 ACAGAGATGATTCGTTAAGCTGTTTGATTCGTTGCTCTAGAGCTGATTACTGCTCCATTG 413
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 357 ACAAAGATGATTCGTTAAGCTGTTTGATTCGTTGCGCTAGAGCTGATTACTGCTCCATTG 416
Query 414 CTTCTGTGAATCGTAGCTTACGTTCTTTGATTCGAAGTGGAGAGATTTATAGACTCAGGA 473
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTTCTGTGAATCGGAGCTTACGTTCTTTGATTCGAAGTGGAGAGATTTATAGACTCAGGA 476
Query 474 GACTACAAGGGACGCTTGAGCATTGGGTTTATTTCTCGTGCCATCTCAATGAATGGGAAG 533
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GGCTACAAGGGACGCTTGAGCATTGGGTTTATTTCTCGTGCCATCTCAATGAATGGGAAG 536
Query 534 CTTTTGATCCAAGATCGAAACGGTGGATGCATTTGCCGAGTATGCCACAGAACGAGTGTT 593
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CTTTTGATCCGAGGTCGAAACGGTGGATGCATTTGCCGAGTATGCCACAGAACGAGTGTT 596
Query 594 TCAGGTATGCAGATAAAGAGTCTTTGGCTGTAGGAACTGATTTGCTTGTGTTTGGTTGGG 653
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCAGGTACGCAGATAAAGAGTCTTTGGCTGTAGGAACTGATTTGCTTGTGTTTGGTTGGG 656
Query 654 AAGTGAGTTCTTACGTAATCTATAGATACAGTCTTTTGACTAACTCTTGGTCTACTGCGA 713
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 657 AAGTGAGTTCTTATGTAATCTATAGATACAGTCTTTTGACCAACTCTTGGTCTACTGGGA 716
Query 714 AGAGTATGAACATGCCTAGATGTTTGTTTGGCTCTGCTAGTTACGGAGAGATTGCGGTTT 773
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 717 AGAGTATGAACATGCCTAGATGTTTGTTTGGCTCTGCTAGTTATGGAGAGATTGCGGTTT 776
Query 774 TAGCGGGTGGTTGCGATTCGAGCGGTAGGATTCTTGATACTGCGGAGTTGTATAACTACG 833
|||| |||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 777 TAGCTGGTGGTTGCGATTCTAATGGTAGGATTCTTGATACTGCGGAGTTGTATAACTATG 836
Query 834 AGGATCAGACTTGGTTGGTGTTACCCGGGATGAACAAGAGGAGGAAAATGTGTTCCGGTG 893
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 837 AGGATCAGACTTGGTCGGTGTTACCGGGGATGAACAAGAGGAGGAAAATGTGTTCCGGTG 896
Query 894 TGTTTATGGATGGGAAGTTTTATGTCATTGGTGGGATTGGTGTTGGGGAAGAGAATGAGC 953
|||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 897 TGTTTATGAATGGGAAGTTTTATGTGATTGGTGGGATTGGTGTTGGGGAAGGGAATGAGC 956
Query 954 CAAAGGTTTTGACTTGTGGGGAAGAGTTTGATTTGAAGACTAGGAAATGGACAGAGATCC 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 957 CAAAGGTTTTGACTTGTGGGGAAGAGTTTGATTTGAAGACTAGGAAATGGACAGAGATTC 1016
Query 1014 CTGAGATGTCACCACCGCGGTCTAACCAGGGGAACGGAATGTCTGCAGCTGCGATGGCTC 1073
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CTGAGATGTCGCCACCGCGGTCTAACCAGGGGAACGGAATGTCTGCAGCTGCGATGGCTC 1076
Query 1074 CACCGCTTGTAGCGGTTGTGAATGACCAGCTTTATGCAGCTGATCATGCTGGTATGGCGG 1133
||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |
Sbjct 1077 CACCGCTTGTAGCGGTTGTGAATGATCAGCTTTACGCGGCTGATCATGCTGGTATGGCTG 1136
Query 1134 TTAGAAGGTATGATAAAGAGAAACGTGTTTGGAATAAAGTTGGGAACTTGCCTGAGCAAG 1193
|||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1137 TTAGGAGGTATGATAAGGAGAAACGGGTTTGGAATAAAGTTGGGAACTTGCCTGAGCAAG 1196
Query 1194 CGGGTTCGATGAACGGTTGGGGTTTAGCTTTTAGAGCTTGTGGGGATCGGATTATAGTGA 1253
| ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1197 CAGGTTCAATGAACGGTTGGGGTTTAGCGTTTAGAGCTTGTGGGGATCGGGTTATAGTGA 1256
Query 1254 TTGGTGGACCAAAGGCTCCAGGTGAAGGATTCATTGAGCTTAACTCATGGGTACCAAGTG 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TTGGTGGACCAAAGGCTCCAGGTGAAGGATTCATTGAGCTTAACTCATGGGTACCAAGTG 1316
Query 1314 TTACAACACCGGAATGGCATTTACTAGGCAAGAAACAGTCGGTTAATTTCGTGTATAATT 1373
| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1317 ATGCAACACCGGAGTGGCATTTACTCGGCAAGAAACAGTCGGTTAATTTCGTGTATAATT 1376
Query 1374 GCGCCGTGATGAGTTGTTGAATAAGTGAAATAAAAC 1409
|||| |||||||| ||||||| ||||||||||||||
Sbjct 1377 GCGCGGTGATGAGCTGTTGAAGAAGTGAAATAAAAC 1412
> Ahg471603 jgi|Araly1|471603|fgenesh2_kg.1__1557__AT1G14330.1
Length=1998
Score = 302 bits (163), Expect = 7e-81
Identities = 794/1083 (73%), Gaps = 106/1083 (10%)
Strand=Plus/Plus
Query 363 ATTCGTTAAGCTGTTTGATTCGTTGCTCTAGAG-CTGATTACTGCTCCATTGCTTCTGTG 421
||||| ||||||||||||| ||||| || || | |||||||| | |||||||||||| |
Sbjct 747 ATTCGATAAGCTGTTTGATCCGTTGTTCGAG-GTCTGATTACGGTTCCATTGCTTCTTTA 805
Query 422 AATCGTAGCTTACGTTCTTTGATTCGAAG--TGGAGAGATTTATAGACTCAGGA-G-ACT 477
|| || || || || ||| || | |||| |||||||||||||||||||||| | |
Sbjct 806 AACCGGAGTTTTCGGTCTCTG-GT-GAAGACCGGAGAGATTTATAGACTCAGGAGGCAAA 863
Query 478 ACAAGGGACGCTTGAGCATTGGGTTTATTTCTCGTGCCATCTCAAT-GAATGGGAAGCTT 536
|| | || | |||| ||||||||||| ||||| ||||| ||| | ||||||| ||||
Sbjct 864 ACCA-GGTTG-TTGAACATTGGGTTTACTTCTCTTGCCAGCTC-TTGGAATGGGTTGCTT 920
Query 537 TTGATCCAAGATCG-AA-ACGGTGGATGCATTTGCCGAGTATGCC-ACAGAACGAGT-GT 592
| |||| | | | || | | |||||| ||||||| | ||||| ||| | ||
Sbjct 921 TCAATCC-TG-TTGAAAGAAGATGGATGAATTTGCCTACAATGCCTTCAG-GTG-GTACA 976
Query 593 TTCAGGTATGCAGATAAAGAGTCTTTGGCTGTAGGAACTGATTTGCTTGTGTTT-GGTTG 651
|||| || ||| |||||||| || | ||||| || || ||||||||||| ||| ||
Sbjct 977 TTCATGTGTGCTGATAAAGAATCGCTCGCTGTTGGTACGGATTTGCTTGT-TTTAGGCAA 1035
Query 652 GGAAG-TGA--GTTCTTACGTAATCTATAGATACAGTCTTTTGACTAACTCTTGGTC-TA 707
|| | | | |||| | || || || ||||||||||||||||||||||||||||| |
Sbjct 1036 AGATGATTACTCTTCTCATGTTATATACAGATACAGTCTTTTGACTAACTCTTGGTCGTC 1095
Query 708 CTGCGAA-GAGTATGAA--CATGCCTAGATGTTTGTTTGGCTCTGCTAGT-TACGGAGAG 763
| | | | ||| ||||| | | || || |||||||||||||| || ||| || ||||||
Sbjct 1096 C-G-GTATGAGGATGAATTC-T-CCGAGGTGTTTGTTTGGCTCAGCGAGTCTA-GGAGAG 1150
Query 764 ATTGCGGTTTTAGCGGGTGGTTGCGATTCGAG-CGGTAGGATTCT-TGATACTGCGGAGT 821
|||||| | || || ||||||| ||||| || | || | |||| | || |||
Sbjct 1151 ATTGCGATCTTCGCTGGTGGTTTTGATTCTCTTCGCAAT-AT-CAGTGATTCCGCTGAGA 1208
Query 822 TGTATAACTAC-GAGGATCAGACTTGGT-TGGTGTTACCCGG-GATGAACAAGAG-GAGG 877
||||||||| | ||| |||||||||| | || || | ||||||||| | ||||
Sbjct 1209 TGTATAACT-CTGAGCTTCAGACTTGGACTACACTT-CC-GAAGATGAACAA-ACCGAGG 1264
Query 878 AAAATGTGTTCCGGTGTGTTT-ATGGATGGGAAGTTTTATGTCATTGGTGGGATTGGTGT 936
| ||||||| ||||| ||| |||||||||||||||||||||||||| || ||||| |
Sbjct 1265 AGGTTGTGTTCGGGTGT-TTTCATGGATGGGAAGTTTTATGTCATTGGAGGAATTGGAG- 1322
Query 937 TGGGGAAGAGAATGAGCCAAAG-GTTTTGACTTGTGGGGAAGAGTTTGATTT-GAAGACT 994
| || || | | |||| | || ||||| || || ||||| ||||| || |||
Sbjct 1323 -G---AACTGACTC-G--AAAGTGCTT--ACTTGCGGTGAGGAGTTCGATTTAGA-GACA 1372
Query 995 AGGAAATGGACAGAGATCCCTGAGATGTCACCACCGCGGTCTAACCAGGGGAACGGAATG 1054
| ||||||||| |||||||| || ||||| || || || | || ||| || | ||
Sbjct 1373 AAGAAATGGACTGAGATCCCGGAAATGTCGCCTCCAAGG---AGCC-GGG-AA---A-TG 1423
Query 1055 TCTGCAGCTGC-GATGGCTCCACCGCTTGTAGCGGTTGTGAATGACCAGCTT-TATGCAG 1112
| ||||| || || ||| ||||| ||||| |||||||||||| | ||| || ||||| |
Sbjct 1424 CCAGCAGCAGCAGA-GGCGCCACCTCTTGTTGCGGTTGTGAATAATCAG-TTGTATGCCG 1481
Query 1113 CTGATCATGCTGGTATGGCGGTTAG-AAGGTATGATAAAGAGA--AACGTGTTTGGAATA 1169
| |||||||||| ||||| ||||| ||| ||||||||||||| || | | || ||
Sbjct 1482 CGGATCATGCTGATATGGAAGTTAGGAAG-TATGATAAAGAGAGTAA-GAAAT-GGTTTA 1538
Query 1170 AAGTT-GGGA-ACTTGCCTGAGCA-AGCGGGTTCGATGAACGGTTGGGGTTTAGCTTTTA 1226
|| ||| | ||||| || | ||| || ||| | ||||||||||| ||||| ||||
Sbjct 1539 CT-TTAGGGCGA-TTGCCGGAA-AGAGCTGGCTCGGTTAACGGTTGGGGATTAGCGTTTA 1595
Query 1227 GAGCTTGTGGGGATCGGATTA-TAGTGATTGGTGGACC-A-AAGGCTCCAGGTGAAGGAT 1283
||||||| || || ||| ||| | ||||||||||| || | ||| || ||||| ||| |
Sbjct 1596 GAGCTTGCGGTGAGCGG-TTAATTGTGATTGGTGGTCCTAGAAGT-TC-AGGTGGAGGGT 1652
Query 1284 TCATTGAGCTTAACTCATGGGTACCA---AGTGTTAC-AA--C-ACCGGAATGG-CATTT 1335
||||||||| || || ||| ||||| |||| | | || | ||| |||| ||||
Sbjct 1653 ACATTGAGCTGAATTCCTGGATACCATCTAGTGAT-CGAAGTCCACCTCTATGGACATTG 1711
Query 1336 ACTAGGCAAGAAACAGTCGGTT-AATTTCGTGTATAATTGCGCCGTGATGAGTTGTTGAA 1394
|| || | |||||| || | |||||||| || ||||| || |||||| |||| |||
Sbjct 1712 -CTCGGTAGGAAACATTCA-TCGAATTTCGTATACAATTGTGCGGTGATGGGTTGCTGA- 1768
Query 1395 TAA 1397
|||
Sbjct 1769 TAA 1771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57935262645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5