BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26940.1
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472705 jgi|Araly1|472705|fgenesh2_kg.1__2659__AT1G26940.1 1496 0.0
Ahg921809 jgi|Araly1|921809|scaffold_103090.1 324 8e-88
> Ahg472705 jgi|Araly1|472705|fgenesh2_kg.1__2659__AT1G26940.1
Length=922
Score = 1496 bits (810), Expect = 0.0
Identities = 887/924 (96%), Gaps = 5/924 (1%)
Strand=Plus/Plus
Query 6 TTCTCTGCCGGTGTTGACTTCAAACTCTCTTTGATTAGATCGGCGCCAACTTCTAAACGC 65
||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||
Sbjct 2 TTCTCTGCCGGAGTTGACTTCAAAGTCTCTTTGATCAGATCAGCGCCAACTTCTAAACGC 61
Query 66 AAATGGGAATCACGAGAAACTTGATCCTGGGTTTGGCTTGTTTAGCCTTTGTCTCCATTG 125
||||||||| || ||||| |||| || ||||||||| |||||||||| ||||||||||||
Sbjct 62 AAATGGGAAACAAGAGAATCTTGGTCGTGGGTTTGGTTTGTTTAGCCCTTGTCTCCATTG 121
Query 126 CTAAAGCTCTGCCTCATGAACCAGAACTTGGCTCGGCTCGTGTCGTCTTCCAGACTAGTT 185
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 122 TTAAAGCTCTGTCTCATGAACCAGAACTTGGTTCGGCTCGTGTCGTCTTCCAGACTAGTT 181
Query 186 ATGGAGATATCGAATTTGGGTTCTATCCCACTGTGGCACCCAAGACAGTGGATCACATCT 245
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 182 ATGGAGATATCGAATTCGGGTTCTATCCCACTGTTGCACCCAAGACAGTGGACCATATCT 241
Query 246 TCAAGCTTGTTCGTTTAGGAGGATACAACACTAATCATTTCTTCAGGGTTGATAAAGGTT 305
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 242 TCAAGCTTGTTCGTTTAGGAGGCTACAACACTAATCATTTCTTCAGGGTTGATAAAGGTT 301
Query 306 TTGTTGCTCAAGTTGCGGATGTGGCGAGTGGACGATCAGCTCCAATGAATGAGGAGCAAA 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 302 TTGTTGCTCAAGTTGCGGATGTGGCGAGTGGACGATCAGCTCCAATGAATGAGGATCAAA 361
Query 366 GGAAAGAAGCTGAGAAGAAAATTGTGGGAGAGTTCAGTGATGTTAAGCATGTCAGAGGTA 425
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 362 GGAAAGAAGCTGAGAAGAAAATTGTGGGAGAGTTCAGTGATGTTAAGCATGTGAGAGGTA 421
Query 426 CTCTTTCCATGGGAAGATATGACGATCCAAACAGTGCACAATCTTCATTTTCGATGCTTC 485
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 422 TTCTTTCCATGGGAAGATATGACGATCCAAACAGCGCACAATCTTCATTTTCGATGCTTC 481
Query 486 TTGGCAATGCTCCTCATCTTGATCGCCAGTATGCTGTGTTTGGTAAAGTTACTAAAGGAG 545
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 482 TTGGCAATGCTCCTCATCTTGATCGCCAGTATGCTGTGTTTGGAAAAGTTACTAAAGGAG 541
Query 546 ATGAAACATTGAGTAAGCTAGAAGAAGTTCCCACTCGCCGCGAGGGGATTTTTGTTATGC 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 ATGAAACATTGAGTAAGCTAGAAGAAGTTCCCACTCGCCGCGAGGGGATTTTTGTTATGC 601
Query 606 CGACGGAGCGGATCACGATTTTGTCGACATACTATTACGACACTAAAATGGAGAGCTGTG 665
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 602 CGACGGAGCGGATCACAATTTTGTCGACATACTATTATGACACTAAAATGGAGAGCTGTG 661
Query 666 AAGAAGAGAGATCTGTCCTGAAAAGAAGGCTTCAAGCATCTTTTGTGGAGGTCGAAAGAC 725
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 662 AAGAAGAAAGATCTGTCCTGAGAAGAAGGCTTCAAGCATCTTTTGTGGAGGTCGAAAGAC 721
Query 726 AGAGAATGAAGTGCTTCCCGTGAATGAAGTTAACACATAAGAAACTGTTCAACAAAAGCC 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 AGAGAATGAAGTGCTTCCCGTGAATGAAGTTAACACATAAGAAACTGTTCAACAAAAGCC 781
Query 786 TTAAAACGCCAGGGAACACAAAGGTAAATGTATGTCTAGTaaaaaaaCTCAGAATGCTAG 845
||||| | |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 782 TTAAA-CACCAGGGAACACAAAGGTAAATGTATGTCTAGTAAAAAA-CTCAGAATCCTAG 839
Query 846 ACAGT-TTATGAGTGGTTTATCAGTGTGAGAGATTGTAGTTAACAGTGTAAA-CAGTTTG 903
||||| || |||||| |||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 840 ACAGTGTTTTGAGTG-TTTATCAGTGAGAGAGATTGTAGTTAACAGTGTAAAACAGTTTG 898
Query 904 AGACATTGAATCATGGATTGTTTC 927
||||||||||||||||||||||||
Sbjct 899 AGACATTGAATCATGGATTGTTTC 922
> Ahg921809 jgi|Araly1|921809|scaffold_103090.1
Length=508
Score = 324 bits (175), Expect = 8e-88
Identities = 223/245 (91%), Gaps = 8/245 (3%)
Strand=Plus/Plus
Query 49 CGCCAACTTCTAAACGCAAATGGGAATCACGAGAAACTTGATCCTGGGTTTGGCTTGTTT 108
||||||||||||||| |||||||||| || ||||| ||||||| ||||||||||||||||
Sbjct 2 CGCCAACTTCTAAACACAAATGGGAAACATGAGAATCTTGATCGTGGGTTTGGCTTGTTT 61
Query 109 AGCCTTTGTCTCCATTGCTAAAGCTCTGCCTCATGAACCAGAACTTGGCTCGGCTCGTGT 168
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||
Sbjct 62 AGCCTTTGTCTCCATTGTTAAAGCTCTATCTCATGAACCAGAACTTGGTTCGGCTCGTGT 121
Query 169 CGTCTTCCAGACTAGTTATGGAGATATCGAATTTGGGTTCTATCCCACTG-TGGCACCCA 227
||||||||||||||||||||||||||||| ||| ||||||||||| || |||| |
Sbjct 122 CGTCTTCCAGACTAGTTATGGAGATATCGG-TTT-----CTATCCCACTGCTG-CACCGA 174
Query 228 AGACAGTGGATCACATCTTCAAGCTTGTTCGTTTAGGAGGATACAACACTAATCATTTCT 287
|||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 175 AGACAGTGGACCATATCTTCAAGCTTGTTCGTTTAGGAGGCTACAACACTAATCATTTCT 234
Query 288 TCAGG 292
|||||
Sbjct 235 TCAGG 239
Score = 124 bits (67), Expect = 9e-28
Identities = 69/70 (99%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 658 GAGCTGTGAAGAAGAGAGATCTGTCCTGAAAAGAAGGCTTCAAGCATCTTTTGTGGAGGT 717
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 362 GAGCTGTGAAGAAGAGAGATCTGTCCTGAAAAGAAGGCTTCAAGCATCTGTTGTGGAGGT 421
Query 718 CGAAAGACAG 727
||||||||||
Sbjct 422 CGAAAGACAG 431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34539362802
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5