BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G26940.1 Length=931 Score E Sequences producing significant alignments: (Bits) Value Ahg472705 jgi|Araly1|472705|fgenesh2_kg.1__2659__AT1G26940.1 1496 0.0 Ahg921809 jgi|Araly1|921809|scaffold_103090.1 324 8e-88 > Ahg472705 jgi|Araly1|472705|fgenesh2_kg.1__2659__AT1G26940.1 Length=922 Score = 1496 bits (810), Expect = 0.0 Identities = 887/924 (96%), Gaps = 5/924 (1%) Strand=Plus/Plus Query 6 TTCTCTGCCGGTGTTGACTTCAAACTCTCTTTGATTAGATCGGCGCCAACTTCTAAACGC 65 ||||||||||| |||||||||||| |||||||||| ||||| |||||||||||||||||| Sbjct 2 TTCTCTGCCGGAGTTGACTTCAAAGTCTCTTTGATCAGATCAGCGCCAACTTCTAAACGC 61 Query 66 AAATGGGAATCACGAGAAACTTGATCCTGGGTTTGGCTTGTTTAGCCTTTGTCTCCATTG 125 ||||||||| || ||||| |||| || ||||||||| |||||||||| |||||||||||| Sbjct 62 AAATGGGAAACAAGAGAATCTTGGTCGTGGGTTTGGTTTGTTTAGCCCTTGTCTCCATTG 121 Query 126 CTAAAGCTCTGCCTCATGAACCAGAACTTGGCTCGGCTCGTGTCGTCTTCCAGACTAGTT 185 |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 122 TTAAAGCTCTGTCTCATGAACCAGAACTTGGTTCGGCTCGTGTCGTCTTCCAGACTAGTT 181 Query 186 ATGGAGATATCGAATTTGGGTTCTATCCCACTGTGGCACCCAAGACAGTGGATCACATCT 245 |||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||| Sbjct 182 ATGGAGATATCGAATTCGGGTTCTATCCCACTGTTGCACCCAAGACAGTGGACCATATCT 241 Query 246 TCAAGCTTGTTCGTTTAGGAGGATACAACACTAATCATTTCTTCAGGGTTGATAAAGGTT 305 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 242 TCAAGCTTGTTCGTTTAGGAGGCTACAACACTAATCATTTCTTCAGGGTTGATAAAGGTT 301 Query 306 TTGTTGCTCAAGTTGCGGATGTGGCGAGTGGACGATCAGCTCCAATGAATGAGGAGCAAA 365 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 302 TTGTTGCTCAAGTTGCGGATGTGGCGAGTGGACGATCAGCTCCAATGAATGAGGATCAAA 361 Query 366 GGAAAGAAGCTGAGAAGAAAATTGTGGGAGAGTTCAGTGATGTTAAGCATGTCAGAGGTA 425 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 362 GGAAAGAAGCTGAGAAGAAAATTGTGGGAGAGTTCAGTGATGTTAAGCATGTGAGAGGTA 421 Query 426 CTCTTTCCATGGGAAGATATGACGATCCAAACAGTGCACAATCTTCATTTTCGATGCTTC 485 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 422 TTCTTTCCATGGGAAGATATGACGATCCAAACAGCGCACAATCTTCATTTTCGATGCTTC 481 Query 486 TTGGCAATGCTCCTCATCTTGATCGCCAGTATGCTGTGTTTGGTAAAGTTACTAAAGGAG 545 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 482 TTGGCAATGCTCCTCATCTTGATCGCCAGTATGCTGTGTTTGGAAAAGTTACTAAAGGAG 541 Query 546 ATGAAACATTGAGTAAGCTAGAAGAAGTTCCCACTCGCCGCGAGGGGATTTTTGTTATGC 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 ATGAAACATTGAGTAAGCTAGAAGAAGTTCCCACTCGCCGCGAGGGGATTTTTGTTATGC 601 Query 606 CGACGGAGCGGATCACGATTTTGTCGACATACTATTACGACACTAAAATGGAGAGCTGTG 665 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 602 CGACGGAGCGGATCACAATTTTGTCGACATACTATTATGACACTAAAATGGAGAGCTGTG 661 Query 666 AAGAAGAGAGATCTGTCCTGAAAAGAAGGCTTCAAGCATCTTTTGTGGAGGTCGAAAGAC 725 ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 662 AAGAAGAAAGATCTGTCCTGAGAAGAAGGCTTCAAGCATCTTTTGTGGAGGTCGAAAGAC 721 Query 726 AGAGAATGAAGTGCTTCCCGTGAATGAAGTTAACACATAAGAAACTGTTCAACAAAAGCC 785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 AGAGAATGAAGTGCTTCCCGTGAATGAAGTTAACACATAAGAAACTGTTCAACAAAAGCC 781 Query 786 TTAAAACGCCAGGGAACACAAAGGTAAATGTATGTCTAGTaaaaaaaCTCAGAATGCTAG 845 ||||| | |||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 782 TTAAA-CACCAGGGAACACAAAGGTAAATGTATGTCTAGTAAAAAA-CTCAGAATCCTAG 839 Query 846 ACAGT-TTATGAGTGGTTTATCAGTGTGAGAGATTGTAGTTAACAGTGTAAA-CAGTTTG 903 ||||| || |||||| |||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 840 ACAGTGTTTTGAGTG-TTTATCAGTGAGAGAGATTGTAGTTAACAGTGTAAAACAGTTTG 898 Query 904 AGACATTGAATCATGGATTGTTTC 927 |||||||||||||||||||||||| Sbjct 899 AGACATTGAATCATGGATTGTTTC 922 > Ahg921809 jgi|Araly1|921809|scaffold_103090.1 Length=508 Score = 324 bits (175), Expect = 8e-88 Identities = 223/245 (91%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 49 CGCCAACTTCTAAACGCAAATGGGAATCACGAGAAACTTGATCCTGGGTTTGGCTTGTTT 108 ||||||||||||||| |||||||||| || ||||| ||||||| |||||||||||||||| Sbjct 2 CGCCAACTTCTAAACACAAATGGGAAACATGAGAATCTTGATCGTGGGTTTGGCTTGTTT 61 Query 109 AGCCTTTGTCTCCATTGCTAAAGCTCTGCCTCATGAACCAGAACTTGGCTCGGCTCGTGT 168 ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| Sbjct 62 AGCCTTTGTCTCCATTGTTAAAGCTCTATCTCATGAACCAGAACTTGGTTCGGCTCGTGT 121 Query 169 CGTCTTCCAGACTAGTTATGGAGATATCGAATTTGGGTTCTATCCCACTG-TGGCACCCA 227 ||||||||||||||||||||||||||||| ||| ||||||||||| || |||| | Sbjct 122 CGTCTTCCAGACTAGTTATGGAGATATCGG-TTT-----CTATCCCACTGCTG-CACCGA 174 Query 228 AGACAGTGGATCACATCTTCAAGCTTGTTCGTTTAGGAGGATACAACACTAATCATTTCT 287 |||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 175 AGACAGTGGACCATATCTTCAAGCTTGTTCGTTTAGGAGGCTACAACACTAATCATTTCT 234 Query 288 TCAGG 292 ||||| Sbjct 235 TCAGG 239 Score = 124 bits (67), Expect = 9e-28 Identities = 69/70 (99%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 658 GAGCTGTGAAGAAGAGAGATCTGTCCTGAAAAGAAGGCTTCAAGCATCTTTTGTGGAGGT 717 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 362 GAGCTGTGAAGAAGAGAGATCTGTCCTGAAAAGAAGGCTTCAAGCATCTGTTGTGGAGGT 421 Query 718 CGAAAGACAG 727 |||||||||| Sbjct 422 CGAAAGACAG 431 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34539362802 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5