BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26945.1
Length=689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472704 jgi|Araly1|472704|fgenesh2_kg.1__2658__AT1G26945.1 994 0.0
> Ahg472704 jgi|Araly1|472704|fgenesh2_kg.1__2658__AT1G26945.1
Length=667
Score = 994 bits (538), Expect = 0.0
Identities = 648/694 (93%), Gaps = 35/694 (5%)
Strand=Plus/Plus
Query 1 AACACCTTCTTCTCCActctcattctctctttctgacacattaactacttatccttcttg 60
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 AACACCTTCTTCTCCACTCTCATTCTCTC--TCTGACACATTAACTACTTATCCTTCTTG 58
Query 61 cattcttctctctctctACACCCAAACAAACACACTTATAATATATCAAGAAAGAAGATG 120
||||| | ||||||||| | ||||||||||||| |||||||||
Sbjct 59 CATTC-T-TCTCTCTCT-----------------C-TATAATATATCAACTAAGAAGATG 98
Query 121 TCTAGCAGAAGATCATCACGTTCAAGACAGTCAGGAAGCTCAAGAATCTCTGACGATCAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 TCTAGCAGAAGATCATCACGTTCAAGACAGTCAGGAAGCTCAAGAATCTCTGACGATCAG 158
Query 181 ATTTCCGATCTTGTTTCTAAGCTCCAACACCTCATCCCTGAACTTCGCCGCCGCCGTTCT 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 159 ATTTCCGATCTTGTTTCTAAGCTCCAACACCTCATCCCTGAACTCCGCCGCCGCCGTTCT 218
Query 241 GACAAGGTGTCAGCATCTAAGGTACTACAAGAGACTTGCAACTACATCAGGAACTTACAC 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 219 GACAAGGTGTCAGCATCTAAAGTACTACAAGAGACTTGCAACTACATCAGGAACTTACAC 278
Query 301 AGAGAGGTTGATGACCTCAGTGACCGTTTGTCGGAACTCTTGGCTTCGACGGACGACAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 279 AGAGAGGTTGATGACCTCAGTGACCGTTTGTCGGAACTCTTGGCTTCGACGGATGACAAC 338
Query 361 AGCGCCGAAGCAGCCATCATTAGGAGCTTGCTTAATTATTAAATCCGCATTACTTAATCT 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 339 AGCGCCGAAGCAGCCATCATTAGGAGCTTGCTTAATTATTAAATCCACATTACTTAATCT 398
Query 421 GAGAGCTATTAATCATCCGTTTCCGGCCACCAAATTTATCTTATTAT----GGGTATCGT 476
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
Sbjct 399 GAGAGCTATTAATCATCCATTTCCGGCCACCAAATTTATCTTATTATATATGGGTATC-T 457
Query 477 CTGTTTACTTCTACATCATATATTATGAGATATAGCTAGGGTTTCGGGTCATTGTTAGGC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 --GTTTACTTCTACATCATATATTATGAGATATAGCTAGGGTTTCGGGTCATTGTTAGGC 515
Query 537 CAACTCatatatttatatttaatatatggttatgtatgtatgtat----gcatgttaatt 592
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 516 CAACTCATATATTTATATTTAATATATGGTTATGTATGTATTTATATATGCATGTTAATT 575
Query 593 gtatCTGAGGGTCCAGACCTGGCGTATAGTAGCCTGTGTATCATGAGATCCTCTAATATT 652
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 576 GTATGTGAGGGTCCAGACCTGGCGTATAGTAGCCTGT--ATCATGAGATCCTCTAATATT 633
Query 653 TATGATTAATGACACGGTCCGTTTCCTTTTTTAC 686
||||||||||||||| || |||||||||||||||
Sbjct 634 TATGATTAATGACACAGTTCGTTTCCTTTTTTAC 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25313616888
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5