BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26960.1
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472703 jgi|Araly1|472703|fgenesh2_kg.1__2657__AT1G26960.1 1729 0.0
Ahg476108 jgi|Araly1|476108|fgenesh2_kg.2__1238__AT1G69780.1 364 6e-100
> Ahg472703 jgi|Araly1|472703|fgenesh2_kg.1__2657__AT1G26960.1
Length=1171
Score = 1729 bits (936), Expect = 0.0
Identities = 1075/1137 (95%), Gaps = 30/1137 (3%)
Strand=Plus/Plus
Query 69 TAGCCTATAAGTGGTGTATACTC-AGTCTTCTAATTCATTTCACCACCATCCTTCTTCTT 127
|||||||||||||||||||| || | | | |||||||||||||||||||||||||||
Sbjct 48 TAGCCTATAAGTGGTGTATAATCTA-AC-AC-GATTCATTTCACCACCATCCTTCTTCTT 104
Query 128 CTTTATTTAGTTTTCTTTCTGTACTTTGAACCAAGAC-AAGGTGGTGGAGAGGAGAAGAA 186
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 105 CTTTATTTAGTTTTCTTTCTGTACTTTGAACCAAGACAAAGGTGGT-----GGAGAAGAA 159
Query 187 GAAAACAACCAACAAGAGACATGTCTTGTAATAATAATGGCTTAGCTTTCTTCCCTGAAA 246
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 160 GAAAACAACTAACAAGAGACATGTCTTGTAATAATAATGGCTTAGCTTTCTTTCCTGAAA 219
Query 247 ATTTCAGTCTCCAAAACCATCACCAAGAAGAAGAAGATCACCCTCAACTTCTTCAAGACT 306
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 220 ATTTCACTCTCCAAAACCATCACCAAGAAGAAGAAGATCATCCTCAACTTCTTCAAGACT 279
Query 307 TCCATGGGTTTCTAGGTAAAAGATCTCCAATGAACAACGTGCAAGGGTTTTGTAATCTAG 366
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 280 TCCATGGGTTTCTAGGTAAGAGATCTCCAATGAACAACGTACAAGGGTTTTGTAATCTAG 339
Query 367 ATATGAACGGAGATGAAGAATATTCAGACGATGGATCTAAGATGGGAGAGAAGAAGAGGA 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 ATATGAACGGAGATGAAGAATATTCAGACGATGGATCTAAGATGGGAGAGAAGAAGAGGA 399
Query 427 GATTGAACATGGAACAATTGAAGGCACTAGAGAAGGACTTTGAGCTTGGTAATAAACTTG 486
||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 400 GATTGAACATGGAACAACTGAAGGCGCTAGAGAAGAACTTTGAGCTTGGTAATAAACTTG 459
Query 487 AATCAGATCGAAAATTAGAGCTAGCTCGTGCCTTGGGATTGCAACCTAGACAAATTGCTA 546
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 460 AATCAGATCGAAAATTAGAGCTGGCTCGTGCCTTGGGATTGCAACCTAGACAAATTGCTA 519
Query 547 TATGGTTCCAAAACAGAAGAGCTCGATCCAAAACCAAGCAGCTTGAGAAAGACTATGACA 606
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 520 TATGGTTCCAAAACAGAAGAGCTCGATCTAAAACCAAGCAGCTTGAGAAAGACTATGACA 579
Query 607 TGCTTAAGCGTCAATTCGAAAGTCTCAGAGATGAGAACGAAGTTCTTCAAACTCAAAATC 666
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 580 TGCTTAAGCGTCAATTCGAGAGTCTCAGAGATGAAAATGAAGTTCTTCAAACTCAAAATC 639
Query 667 AAAAGCTTCAAGCTCAGGTAATGGCATTGAAAAGCAGAGAACCAATAGAATCAATCAATC 726
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 640 AAAAGCTTCAAGCTCAGGTAATGGCATTGAAAATCAGAGAACCAATAGAATCAATCAATC 699
Query 727 TGAACAAAGAAACAGAAGGATCATGTAGTGACAGAAGTGAGAACATTTCTGGTGACATCA 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 TGAACAAAGAAACAGAAGGATCATGTAGTGACAGAAGTGAGAACATTTCTGGTGACATCA 759
Query 787 GGCCACCGGAGATCGATAGCCAATTCGCCCTAGGCCATCCACCGACAACTACAACGATGC 846
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 760 TACCACCGGAGATCGATAGCCAATTCGCAGTAGGCCATCCACCGACAACTACAACGATGC 819
Query 847 AGTTTTTTCAGAATTCATCGTCAGAACAGAGAATGGTGAAAGAAGAGAACAGTATCAGTA 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 AGTTTTTTCAGAATTCATCGTCAGAACAGAGAATGGTGAAAGAAGAGAACAGTATCAGTA 879
Query 907 ACATGTTCTGTGGAATTGATGACCAGTCTGGGTTCTGGCCATGGCTTGACCAGCAACAA- 965
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 880 ACATGTTCTGTGGAATTGATGACCAGTCTGGGTTCTGGCCATGGCTTGACCAACAACAAC 939
Query 966 -T-ACAATTGAATGTGGTCGATCTGTTCTTGTTTGTATTAAAATTTTCGTTTTCTTTAAG 1023
| |||||||||||||| |||||| || |||||||||||||||||||||||| |||||||
Sbjct 940 ATTACAATTGAATGTGGCCGATCTTTTTTTGTTTGTATTAAAATTTTCGTTT-CTTTAAG 998
Query 1024 TGGTCAGATGAACCAATTCATGTTTCAAGAATCTATATTTA---GTCTATATGCACCAAC 1080
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 999 TGGTCAGATGAACCAATTTATGTTTCAAGAATCTATATTTATTAGTCTATATGCACCAAC 1058
Query 1081 TAAGCTAG---------TAGtttttttGGGTAATGTGATGTAAGAGAATTAATGGGGGAA 1131
||||||| || ||||||||||||| ||||||||||| | ||||||||||
Sbjct 1059 TAAGCTAAAAACCACACTATTTTTTTTGGGTAACGTGATGTAAGA---T-AATGGGGGAA 1114
Query 1132 ATATTCATCATATTATATGATAATTAATCAATCATATGGGCCATATGATTAGACATT 1188
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1115 ATATTCATCATATTATATAATAATTAATCAATCATATGGGCCATATGATTAGACATT 1171
Score = 89.8 bits (48), Expect = 4e-17
Identities = 48/48 (100%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1 TTGTCTCCTATTTTATATACTCATATAATAAACAAAATAAAACCAAAT 48
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGTCTCCTATTTTATATACTCATATAATAAACAAAATAAAACCAAAT 48
> Ahg476108 jgi|Araly1|476108|fgenesh2_kg.2__1238__AT1G69780.1
Length=1323
Score = 364 bits (197), Expect = 6e-100
Identities = 342/412 (83%), Gaps = 10/412 (2%)
Strand=Plus/Plus
Query 369 ATGAACGGAGATGAAGAATATTCAGACGATGGATCT-AAGATGGGAGAGAAGAAGAGGAG 427
||||| || || ||||| |||||||| ||||| ||| || ||||||||||||||||||||
Sbjct 433 ATGAATGGTGAAGAAGATTATTCAGATGATGGGTCTCAA-ATGGGAGAGAAGAAGAGGAG 491
Query 428 ATTGAACATGGAACAATTGAAGGCACTAGAGAAGGACTTTGAGCTTGGTAATAAACTTGA 487
|||||||||||||||| ||||| || |||||||| ||||||||||||| || ||||||||
Sbjct 492 ATTGAACATGGAACAAGTGAAGACATTAGAGAAGAACTTTGAGCTTGGAAACAAACTTGA 551
Query 488 ATCAGATCG-AAAATTAGAGCTAGCTCGTGCCTTGGGATTGCAACCTAGACAAATTGCTA 546
| |||| | ||||| |||||||||||||||| || |||||||| ||||| || || |
Sbjct 552 ACCAGAGAGGAAAATGC-AGCTAGCTCGTGCCTTAGGTTTGCAACCAAGACAGATCGCGA 610
Query 547 TATGGTTCCAAAA-CAGAAGAGCTCGATCCAAAACCAAGCAGCTTGAGAAAGACTATGAC 605
| ||||||||||| | |||||||||| | ||||| ||||||||||||||||| |||||
Sbjct 611 TTTGGTTCCAAAATC-GAAGAGCTCGTTGGAAAACAAAGCAGCTTGAGAAAGATTATGAT 669
Query 606 A-TGCTTAAGCGTCAATTCGAAAGTCTCAGAGATGAGAACGAAGTTCTTCAAACTCAAAA 664
| | ||||| || || || || | || | || ||| || || ||||||||||||| ||
Sbjct 670 ACT-CTTAAACGACAGTTTGATACACTTAAAGCTGAAAATGATCTTCTTCAAACTCATAA 728
Query 665 TCA-AAAGCTTCAAGCTCAGGTAATGGCATTGAAAAGCAGAGAACCAATAGAATCAATCA 723
||| ||| || |||||| || |||||| ||| |||| |||||||| || ||||||||| |
Sbjct 729 TCAGAAA-CTCCAAGCTGAGATAATGGGATTAAAAAACAGAGAACAAACAGAATCAATAA 787
Query 724 ATCTGAACAAAGAAACAGAAGGATCATGTAGTGACAGAAGTGAGAACATTTC 775
|||| ||||||||||| |||||||| |||||| |||||||||| |||| |||
Sbjct 788 ATCTAAACAAAGAAACTGAAGGATCTTGTAGTAACAGAAGTGATAACAGTTC 839
Score = 185 bits (100), Expect = 5e-46
Identities = 154/180 (86%), Gaps = 3/180 (2%)
Strand=Plus/Plus
Query 820 GCCATC-CACCGACAACTACAACGATGCAGTTTTTTCAGAATTCATCGTCAGAACAGAGA 878
|||| | || ||||||| || || |||||||| ||||| || ||||| |||| ||||||
Sbjct 955 GCCACCGCAACGACAACAACGACAATGCAGTTCTTTCAAAACTCATCTTCAGGACAGAGT 1014
Query 879 ATGGTGAAAGAAGAGAACAGTATCAGTAACATGTTCTGTGGAATTGATGACCAGTCTGGG 938
||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 1015 ATGGTTAAAGAAGAGAACAGTATCAGTAACATGTTCTGTGCAATGGATGACCATTCTGGT 1074
Query 939 TTCTGGCCATGGCTTGACCAGCAACAATACAATTGAA-TGTGGTCGATCTGTTCTTGTTT 997
|| |||||||||||||| |||||||| |||||||||| | ||||| | ||||| || |||
Sbjct 1075 TTTTGGCCATGGCTTGATCAGCAACAGTACAATTGAAAT-TGGTCTACCTGTTTTTTTTT 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44603812890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5