BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26970.1
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472702 jgi|Araly1|472702|fgenesh2_kg.1__2656__AT1G26970.1 1960 0.0
Ahg476109 jgi|Araly1|476109|fgenesh2_kg.2__1239__AT1G69790.1 802 0.0
Ahg316389 jgi|Araly1|316389|fgenesh1_pm.C_scaffold_2001422 237 2e-61
> Ahg472702 jgi|Araly1|472702|fgenesh2_kg.1__2656__AT1G26970.1
Length=1295
Score = 1960 bits (1061), Expect = 0.0
Identities = 1221/1299 (94%), Gaps = 7/1299 (1%)
Strand=Plus/Plus
Query 145 ATGGGAAATTGCTTTGGGTT-TTCCGCAAAAGTAGGTAATAGAGAAAGTCCTTATCGTGG 203
||||| ||||||||| | || |||||||||||||| || ||||||||||||| ||||||
Sbjct 1 ATGGGCAATTGCTTT-GATTCTTCCGCAAAAGTAGATAGCAGAGAAAGTCCTTGTCGTGG 59
Query 204 TTCGTCAAGAATCTCTGCCAAAAGAAGTCAATCGTCTCGGCTTTCAAGCTTAACAATACA 263
|| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 60 TTTATCAAGAATCTCTGCCAAAAGAAGTCAATCGTCTCGGTTTTCAAGCTTAACCATACA 119
Query 264 ATCATCATCTTACAACGATGACACG-AGTGTGGCGTCTCTTCAAACGCCTAGAAGTGAAG 322
|||| |||||||||||||||||| | ||| ||||||||||||||| ||| ||||||||||
Sbjct 120 ATCACCATCTTACAACGATGACA-GTAGTTTGGCGTCTCTTCAAATGCCGAGAAGTGAAG 178
Query 323 GAGAGCTCTTAGCATCGCCCACGCTAAAGGCATTTACGTTTAACGAGCTAAAGACAGCCA 382
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 179 GAGAGCTCTTAGCATCTCCCACGCTAAAGGCGTTTACATTTAACGAGCTAAAGACAGCCA 238
Query 383 CTAGGAATTTCAGACCCGATAGTGTTATCGGTGAAGGCGGTTTCGGTTATGTCTACAAAG 442
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 239 CTAGGAATTTCAGACCCGATAGTGTTATTGGTGAAGGCGGTTTTGGTTATGTCTACAAAG 298
Query 443 GATGGATCGATGAACGCACTTTATCGCCTTCAAAACCAGGGTCAGGCATGGTCGTTGCTG 502
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 GATGGATCGATGAACGCACTTTATCGCCTTCAAAACCGGGGTCAGGCATGGTCGTTGCTG 358
Query 503 TCAAAAAGCTTAAAGAAGAAGGGTTTCAAGGACACAGGCAGTGGTTGGCGGAGGTTGATT 562
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TCAAAAAGCTTAATGAAGACGGGTTTCAAGGACACAGGCAGTGGTTGGCGGAGGTTGATT 418
Query 563 GTCTTGGGAGGCTTCACCATATGAATCTTGTGAAACTAATTGGATATTGCTCGAAGGGTG 622
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 419 GTCTTGGGAGGCTTCACCATATCAATCTTGTGAAACTAATTGGATACTGCTCAAAGGGTG 478
Query 623 ATCATATTCGGCTTTTGGTGTATGAGTACATGCCAAAGGGAAGCTTGGAGAATCATCTCT 682
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATTTTATTCGGCTTTTGGTGTATGAGTACATGCCAAAGGGAAGCTTGGAGAATCATCTCT 538
Query 683 TTAGACGTGGGGCAGAACCGATTCCGTGGAGAACAAGGATTAAAGTGGCTATCGGTGCGG 742
|||||||||||||||| || |||||||||| ||||||||| |||||||| || ||||||
Sbjct 539 TTAGACGTGGGGCAGAGCCTATTCCGTGGAAAACAAGGATGAAAGTGGCGATTAGTGCGG 598
Query 743 CGAGAGGGCTTGCTTTCCTTCATGAAGCTCAAGTCATATACAGAGACTTCAAGGCCTCCA 802
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 599 CGAGAGGGCTTGCTTTTCTTCATGACGCTCAAGTCATATATAGAGACTTCAAGGCCTCCA 658
Query 803 ATATTCTACTTGATTCGGAATTCAATGCAAAGCTTTCTGATTTTGGATTGGCGAAAGTAG 862
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 ATATTTTACTTGATTCGGAATTCAATGCAAAGCTTTCAGATTTTGGATTGGCGAAAGTAG 718
Query 863 GACCAACCGGAGACAGAACACACGTATCAACCCAAGTGATGGGAACTCAAGGCTATGCAG 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GACCAACCGGAGACAGAACACACGTATCAACCCAAGTGATGGGAACTCAAGGCTATGCAG 778
Query 923 CACCTGAATACGTTGCCACTGGTCGGATAACAGCCAAAAGTGACGTCTACAGCTTCGGTG 982
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 779 CACCTGAATACGTTGCCACTGGTCGGATAACGGCCAAAAGCGACGTCTACAGCTTCGGTG 838
Query 983 TGGTCTTGCTAGAGTTACTGTCGGGACGTCTGACCGTAGACAAAACGAAAGTAGGAGTGG 1042
|||||||||| ||||||||||||||||||| | || |||||||| |||||||||||||||
Sbjct 839 TGGTCTTGCTCGAGTTACTGTCGGGACGTCCGTCCATAGACAAATCGAAAGTAGGAGTGG 898
Query 1043 AACGAAATCTGGTTGATTGGGCAATACCTTACTTAGGAGACAAAAGGAAAGTGTTTAGGA 1102
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 899 AACGAAATCTGGTTGATTGGTCAAGACCTTACTTAGGAGACAAAAGGAAAGTGTTTAGGA 958
Query 1103 TAATGGACACAAAGCTTGGGGGACAATATCCTCACAAAGGAGCTTGTTTGACTGCTAATA 1162
||||||||||||| ||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct 959 TAATGGACACAAAACTTGGGGGACAGTATCCTCACAAAGGAGCTTGTTTGGCCGCTAATA 1018
Query 1163 CTGCGTTGCAATGTCTTAATCAAGAACCTAAGTTGAGGCCAAAGATGTCTGATGTGTTAT 1222
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1019 CTGCGTTGCAATGTCTTAATCAAGAACCTAAGTTGAGGCCAAAGATGTATGATGTGTTAT 1078
Query 1223 CTACTCTTGAAGAGTTGGAGATGACGTTGAAGTCGGGTTCTATTTCAAACTCGGTTATGA 1282
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct 1079 CTACTCTTGAAGAGTTGGAGATGACGTTGAAGTCGGATTCTACTTCAAACTCGGTCATGA 1138
Query 1283 AATTGACATCTTCTTCCTCTTCTTTCACGGCGAAACAGAGAGTAAGAACTCCGGTTGCTG 1342
|||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct 1139 CATTGACATCTTCTTCCTCTTCTTTGACGGCGAAACAGAGAGTTAGAGCTCCGGTTGCTG 1198
Query 1343 ATCCGGTGTTGTCTAGTAGACGATGTCGACGTGTTCGGTGAAGTAGCGACAGAGA-TAGT 1401
|| |||||||||||| |||| ||||||| ||||||| |||||||||| ||| | | ||||
Sbjct 1199 ATGCGGTGTTGTCTACTAGAAGATGTCGTCGTGTTCAGTGAAGTAGCAACATA-ACTAGT 1257
Query 1402 TAGGTTTTATGAGTGCATGCAtttttttttgtttttttt 1440
|||| |||||||||| ||||||||||| || ||| ||||
Sbjct 1258 TAGGCTTTATGAGTGTATGCATTTTTTGTT-TTTGTTTT 1295
> Ahg476109 jgi|Araly1|476109|fgenesh2_kg.2__1239__AT1G69790.1
Length=1573
Score = 802 bits (434), Expect = 0.0
Identities = 908/1130 (80%), Gaps = 60/1130 (5%)
Strand=Plus/Plus
Query 127 TTTCTCTGAGTTTTTCTAATGGGAAATTGCTTTGG-GTTTTCCGCAAAAGTAGGTAATAG 185
||||| ||| | | ||||||||| |||||| |||| | ||| |||| ||||| ||| ||
Sbjct 214 TTTCT-TGA-TCTCTCTAATGGGGAATTGC-TTGGACTCTTCTGCAAGAGTAGATAACAG 270
Query 186 AGAAAGTC-CTTATCGTGGTTCGTCAAGAATCTCTGCC-AAAAGAAGTCAATCGTCTCGG 243
|||||| | ||| | | || || |||||||| || || ||| || ||| || ||| |
Sbjct 271 AGAAAG-CACTTTTGGAGGGTCATCAAGAATTTC-CCCTAAACTAAATCAGTCATCTTGT 328
Query 244 CTTTCAAGCTTAACAATACAATCATCATCT-TA-CAACGAT-G--ACACGAGTGTGGCGT 298
||||||||| | || |||| | || | | || |||| || | ||| | | | | |
Sbjct 329 CTTTCAAGCCTCACCATAC---CTTC-T-TATAGCAACAATAGCTTCACTACT-T--CAT 380
Query 299 C-TCTTCAAA-C-G---CCTAGAAGTGAAGGAGAGCTCTTAGCATCGCCCACGCTAAAGG 352
| | ||||| | | || ||||||||||||||||||||| |||| || || |||||||
Sbjct 381 CATGGTCAAATCTGACACCAAGAAGTGAAGGAGAGCTCTTACCATCTCCGACACTAAAGG 440
Query 353 CATTTACGTTTAACGAGCTAAAGACAGCCACTAGGAATTTC-AGACCCGATAGTGTTATC 411
| ||||| || ||||||||||| || || ||||| || ||| || || ||||| | |||
Sbjct 441 CTTTTACATTCAACGAGCTAAAAACCGCTACTAGAAACTTCAAG-CCTAATAGTATGATC 499
Query 412 GGTGAAGGCGGTTTCGGTTATGTCTACAAAGGATGGATCGATGAACGCACTTTATCGCCT 471
|||||||||||||| ||||||||||| ||||| ||||||| ||||||| | ||||| |||
Sbjct 500 GGTGAAGGCGGTTTTGGTTATGTCTATAAAGGTTGGATCGGTGAACGCTCGTTATCACCT 559
Query 472 TCAAAACCAGGGTCAGGCATGGTCGTTGCTGTCAA-AAAGCTTAAAGAAGAAGGGTTTCA 530
|| ||||||||||| || ||||||||||| ||||| ||| |||||| ||||||||||||
Sbjct 560 TCGAAACCAGGGTCTGGTATGGTCGTTGCAGTCAAGAAA-CTTAAATCAGAAGGGTTTCA 618
Query 531 AGGACAC-AGGCAGTGGTTGGCGGAGGTTGATTGTCTTGGGAGGCTTCACCATATGAATC 589
||||||| | | |||||||| | |||||| | | ||||||||| ||||| ||||||||||
Sbjct 619 AGGACACAAAG-AGTGGTTGACTGAGGTTCACTATCTTGGGAGACTTCATCATATGAATC 677
Query 590 TTGTGAAACTAATTGGATATTGC-TCGAAGGGTGATCATATTCGGCTTTTGGTGTATGAG 648
||||||| ||||||||||||||| | | |||| || | | | |||||||| || |||
Sbjct 678 TTGTGAAGCTAATTGGATATTGCTTAG-AGGGAGA-GA-A-AAGACTTTTGGTTTACGAG 733
Query 649 TACATGCC-AAAGGGAAGCTTGGAGAATCATCTCTTTAGACGTGGGGCAGAACCGATTCC 707
|||||||| ||| |||||||||||||||||||| ||| || | || ||||| || |||||
Sbjct 734 TACATGCCTAAA-GGAAGCTTGGAGAATCATCTGTTTCGAAGAGGCGCAGAGCCAATTCC 792
Query 708 GTGG-AGAACAAGGATTAAAGTGGC-TATCGGTGCGGCGAGAGGGCTTGCTTTCCTTCAT 765
|||| || || ||||| |||||||| | | | || |||||||| ||||||||||||||
Sbjct 793 GTGGAAG-ACTAGGATGAAAGTGGCGT-TTAGCGCAGCGAGAGGACTTGCTTTCCTTCAC 850
Query 766 GAAGCTCAAGTCATATACAGAGACTTCAAGGCCTCCAATATTCTACTTGAT-TCGGAATT 824
|||||| ||||||||||| |||||||||||||||||||||||||||||||| | ||| ||
Sbjct 851 GAAGCTAAAGTCATATACCGAGACTTCAAGGCCTCCAATATTCTACTTGATGT-GGATTT 909
Query 825 CAATGCAAAGCTTTCTGATTTTGGATTGGCGAAAG-TAGGACCAACCGGAGACAGAACAC 883
|||||||||||| |||||||| |||||||| |||| | |||||||| ||||| ||||| |
Sbjct 910 CAATGCAAAGCTATCTGATTTCGGATTGGCAAAAGCT-GGACCAACAGGAGATAGAACCC 968
Query 884 ACGT-ATCAACCCAAGTGATGGGAACTCAAGGCTATGCAGCACCTGAATACGTTGCCACT 942
| || | |||| |||||||| || || |||||||| || || || |||||| | || ||
Sbjct 969 ATGTCA-CAACTCAAGTGATAGGCACACAAGGCTACGCCGCTCCGGAATACATAGCAACC 1027
Query 943 GGTCGGATAACAGCCAAAAGTGACGTCTACAGCTTCGGTGTGGT-CTTGCTAGAGTTACT 1001
|| ||| |||||||||| ||||| ||||| ||||| || ||||| || ||| || ||||
Sbjct 1028 GGCCGGTTAACAGCCAAGAGTGATGTCTATAGCTTTGGAGTGGTGCT-GCTTGAACTACT 1086
Query 1002 GTCGGGACGTCTGACCGTAGACAAAACGAAAGTAGGAGTGGAACGAAATCTGGTTGATTG 1061
|||||||||| ||| |||||||| ||||||||||||||||||| |||||||| |||||
Sbjct 1087 CTCGGGACGTCCCACCCTAGACAAATCGAAAGTAGGAGTGGAACGTAATCTGGTGGATTG 1146
Query 1062 GGCAATACCTTACTTAGGAG-ACAAAAGGAAAGTGTTTAGGATAATGGACACAAAGCTTG 1120
|||||||||||| || || | ||| ||| ||| ||||||| |||||||||||||||||||
Sbjct 1147 GGCAATACCTTATTT-GGTGGACAGAAGAAAAATGTTTAGAATAATGGACACAAAGCTTG 1205
Query 1121 GGGGACAATATCCTCACAAAGGAGCTTGTTT-GACTGCTAATA-CTGCGTTGCAATGTCT 1178
| ||||| || ||||||||||| ||||| | ||||||| | | || |||| |||||
Sbjct 1206 GAGGACAGTACCCTCACAAAGGGGCTTGCGCAG-CTGCTAACATC-GCATTGCGGTGTCT 1263
Query 1179 TAATCAA-GAACCTAAGTTGAGGCCAAAGATGTCTGATGTGTTATCTACT 1227
|| || ||||||||| |||| || | ||| ||||||| ||||| |||
Sbjct 1264 CAA-CACCGAACCTAAGCTGAGACCGGATATGGCTGATGTCTTATCCACT 1312
> Ahg316389 jgi|Araly1|316389|fgenesh1_pm.C_scaffold_2001422
Length=1200
Score = 237 bits (128), Expect = 2e-61
Identities = 302/384 (79%), Gaps = 20/384 (5%)
Strand=Plus/Plus
Query 772 CAAGTCATATACAGAGACTTCAAGGCCTCCAATATTCTACTTGATTCGGAATTCAATG-C 830
|||||||| |||||||||||||| || | ||||| || || ||||| |||||||| | |
Sbjct 637 CAAGTCATTTACAGAGACTTCAAAGCAGCAAATATCCTTCTCGATTCAGAATTCAACGCC 696
Query 831 AAAGCTTTCTGATTTTGGATTGGCGAAAGTAGGACCAACCGGA-GACAGAACACACGT-A 888
||| || || || |||||||| || |||| ||| |||| ||| || | ||||||| |
Sbjct 697 AAA-CTCTCAGACTTTGGATTAGCCAAAGAAGGTCCAA-AGGACAACCGTTCACACGTGA 754
Query 889 TCAACCCAAGTGATGGGAACTCAAGGCTATGCAGCACCTGAATA-CGTTGCCACTGGTCG 947
||||| |||| ||||| ||| |||| || ||||| || ||||| | | || || ||||
Sbjct 755 -CAACCGAAGTCATGGGTACTGAAGGTTACGCAGCTCCAGAATATC-TAGCAACAGGTCA 812
Query 948 GATAACAGCCAAAA-GTGACGTCTACAGCTTCGGTGTGGTCTTGCTAGAG-TTACTGTCG 1005
||||| ||||| |||| ||||||||||||||||| || ||||||||| || || ||
Sbjct 813 TCTAACA-ACAAAATGTGATGTCTACAGCTTCGGTGTAGTGTTGCTAGAGATT-CTATCT 870
Query 1006 GGACGTCTGA-CCGTAGACAAAACGAAAGTA-GGAGTGGAACGAAA-TCTGGTTGATTGG 1062
||||||| || | |||||||||| |||| | || | ||| |||| || || || |||
Sbjct 871 GGACGTC-GAGTCATAGACAAAACCAAAGCACGG-GAAGAA-GAAAGCCTAGTGGAATGG 927
Query 1063 GCAATACCTTACTTAG-GAGACAAAAGGAAAGTGTTTAGGATAATGGACACAAAGCTTGG 1121
|||| ||||||||| | ||||||| | |||||||||||||||||||||||||||||||
Sbjct 928 GCAACACCTTACTT-GCGAGACAAGCGAAAAGTGTTTAGGATAATGGACACAAAGCTTGT 986
Query 1122 GGGACAATATCCTCACAAAGGAGC 1145
||| ||||| ||| | |||| |||
Sbjct 987 GGGTCAATACCCTAAGAAAGCAGC 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58049533380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5